Talaromyces rugulosus: TRUGW13939_04496
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Entry
TRUGW13939_04496 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12600
superkiller protein 3
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_04496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_04496
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
TRUGW13939_04496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_CcmH_CycH
TPR_2
TPR_19
TPR_17
TPR_22
TPR_16
TPR_14
TPR_8
TPR_12
TPR_11
TPR_1
ARM_TT21_5th
TPR_6
TPR_7
TPR_Slam
ARM_TT21_N
FAT
TPR_9
TPR_10
T7SS_EccA1_N
TPR_15
RNPP_C
TPR_20
Motif
Other DBs
NCBI-GeneID:
55991997
NCBI-ProteinID:
XP_035343562
UniProt:
A0A7H8QTR7
LinkDB
All DBs
Position
II:complement(join(5817438..5821056,5821117..5821317,5821386..5821501))
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AA seq
1311 aa
AA seq
DB search
MSSKAALKAVRTALDSKDFEGAATKANELVERDPTNYHAHVFLGLAQDKLEKSDEAEKAY
LAATRIKDNDKTAWQGLVNLYEKQGNKKLDEYQAATLKLGEIFADGDERERCVDVVDKFV
KFARKSGTRTQQRKALHLLLPTCPLYSSLEGRVPHPADTFSRLIEITEAEEKEFINREIG
ERRTRLGAKIDQVTAEVKREALSNQDLDAYYTGLINWTSDDEVRHRFEEKLLQRAYDLLL
VLPQDQKSEKREAVFQGARDMVIIKYPFDLAWKIVLEWNDVEDPAEWDVGVLREFTEFFP
EDGVSKVLQGFLSSDLSPLPSDTEVQQSAQADTDDVQMAVEDRLILMSDGLEHASSSIIA
HRIMAQLYVNLDEHISAVDVARKGLLLVKDTTRKTGVSLRQTTDALNITLGTALISYQSP
RHHPEAKSIFDSILKRKPTNTHCLLGIGLVLEEDQEYEEAVDFFSRALQRDPSNTKIQSE
LAWCTALNGNLEFGLENLQAVLASIEEAETQNREFKSEVLYRIGRCQWDLDPSSAARKNR
NGAYASFIGSIRSNMNFAPAYTSLGIFYADYKKDKARARRCFHKAFELSPSEIEAAERLA
KAFADKQEWDLVEAVAQRVVDSGKAKPAPGSKRKGYSWPYAALGVVQINRQQYTKSIVSY
QATLRISPDDYHSWVGLGESYHNSGRYIAATKAFEHAEELEANLPKSESSNIWFSRYMLA
NVKRELGDYEDAVGRYEDVLAIRPNEFGVMVALLQTLTESSWKSLDTGLFNDAAKSARKA
LDVVAAMVKERFKVFNLWKAVGDACAIFSYLKNKSSYVSVPDLLSLLSTEIEGGALDIIV
DTDNVGSNYATLLDPENEDISPSERCLYASILAYKRAVYVAAEDVHGQAISWYNLGWAEY
RAYRSIEIGKTKKDARQTKRFLKAAIICFKRAIELEAGNSGFWNSLGVVTSSLSPKVAQH
AFVRSLHLNDRSAQNWTNLGAFYLINGDLQLANEAFTRGQSADPDYAQAWLGQGFLALLF
GDPSEATALFAHAFDISTSTSTITKQQYTLSLFDHLLADASMSNEISQLIRPFFALQQLR
VQEPSNLAFEHLLALLAERIGEYQQADDALGVVCTGVEAEYEVTESVSSLTHFALANADA
ARIHLAKQEYEQSAEKAETALTLSEGDETENADLETIGRLRLSAHLTAGLAYYYMKSMDQ
AIDRFRDALQESNNDPDVTCLLAQVLWAKGGKEESSVAREQLFDSVEKHPDHVGSVTLLG
VIALLDADEDAIEAVHADLQMMRTKDNIEIHDRAKVVKLLTAISTMGFCAN
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggcagctctgaaggctgtcagaacagcattggattccaaagattttgaa
ggagcagctacgaaagcaaacgaactggtcgagcgcgaccccaccaactaccatgcgcac
gttttcctagggcttgcacaagacaagctcgaaaaaagtgacgaagcggagaaggcgtac
ctcgcagcaactcgcatcaaagacaatgacaagacggcttggcaaggcctggtaaacttg
tatgaaaagcaggggaataaaaagctcgacgagtatcaagcggcaactttgaagctagga
gaaatattcgcagatggcgacgaacgtgagcggtgtgtcgacgttgtggataaattcgtc
aagtttgctcggaaaagcggtactcgtacacagcagcgaaaggctttacatcttctgctt
ccgacatgtcccctctattcttctctagaaggaagagtcccgcatcccgctgataccttt
tcgagactgattgagatcaccgaagcggaggagaaagagtttataaaccgagaaatcggc
gagaggagaacacgtcttggtgcaaagattgaccaagttactgcggaagtgaagcgcgag
gcactttccaaccaagatcttgatgcatactacacgggacttatcaactggactagtgat
gacgaagtcaggcatcggtttgaggagaagcttctccaaagggcatacgatttgcttctg
gtcctaccgcaagaccagaagtcagagaagcgtgaagcagtgtttcagggagcacgtgac
atggtcattatcaagtatccttttgatctagcttggaaaattgttctcgagtggaacgat
gttgaagaccctgcagagtgggacgttggtgttctacgtgaattcacagaattctttccc
gaagatggagttagcaaagtgctacagggcttcttgagtagtgatctttctccattacct
tcggatacagaggtacagcagtcagctcaggccgacaccgacgatgtgcaaatggctgta
gaggatcgattgatcctcatgtcagatggtcttgagcacgcatcctcttcgatcatagcc
catcgaattatggctcagctttatgtgaatctcgacgagcatataagtgcggtagatgtc
gctcgaaagggcctcttgctcgtaaaggatacgaccaggaaaacaggagtgtctcttcgt
caaaccacggatgctttgaatattactctaggcacggcactaatctcataccagtcgccg
cggcatcatccggaagccaagagtatattcgacagcatactaaagaggaagcccacgaac
actcattgcttgctaggcataggcctggtactggaagaagaccaggaatatgaagaagct
gtcgacttttttagtcgggctctgcaacgggatccgtccaacaccaaaatccaatcggag
cttgcttggtgcacggcgctcaatggcaatcttgaattcggtctggaaaacctacaggcc
gttcttgcgagcatagaagaggcggaaacacagaatcgtgaattcaagtcagaggttttg
taccgcattggtcggtgccaatgggacctggacccttcaagtgccgctcgaaagaatcga
aatggtgcatatgccagcttcattggctctatccggtcaaacatgaactttgctccagct
tataccagtctggggatattctatgcagactataagaaagacaaagccagggcaaggcgg
tgttttcataaggcctttgagctttccccatctgaaatagaagcagccgaacggctcgca
aaagctttcgctgataagcaagagtgggatctggttgaagccgttgcccagcgagtcgtt
gattctggaaaagcgaagcctgccccagggtctaaacgcaagggttacagttggccatac
gcagcactgggagttgtacagatcaacagacagcaatataccaaaagcattgtgtcatac
caggctaccctacggatatctcccgatgattaccattcctgggtgggactcggcgaaagc
tatcacaattctgggaggtatattgctgctaccaaagcattcgaacatgcagaggaactg
gaagccaatcttcccaaatcagagagttcgaatatctggttttctcgatatatgcttgct
aatgtcaagcgagagctgggcgattacgaagatgcggtgggtcggtatgaagacgtgctg
gcaattcgacccaacgaatttggggttatggttgcactcctgcaaacattaacggaaagc
tcttggaaaagcctcgatactggtctattcaatgatgcagccaaatcagctcgcaaggcc
ttggacgttgttgctgccatggtgaaagagagattcaaagtgttcaatctgtggaaagca
gtaggtgacgcatgcgctattttctcttacttgaagaacaaatcaagttatgtgtctgtt
cccgacttactctccctgctaagtacggagattgaaggaggcgcactcgatatcatcgtt
gatacggacaacgttggaagcaactatgccaccttactcgaccccgaaaacgaggatatt
tcgccatcagaacgttgtctctatgcctccatcttggcttacaagcgcgcagtctacgta
gctgccgaagatgttcatggacaagcaatatcttggtacaatctaggatgggctgaatac
agggcctacaggagcattgaaattggcaaaacaaagaaagacgcacggcaaaccaaacga
ttcctaaaagcggccataatatgctttaagcgagctattgagctagaggcaggaaattcc
ggattctggaactctttgggggtcgtcacatcatccctcagtcccaaggtggctcagcat
gcttttgttcgcagtctacacctgaacgaccggagtgctcaaaattggacaaatctgggc
gctttctacttgatcaatggtgacctgcaactagctaatgaagctttcacgcgaggccaa
tcggctgaccctgactacgcccaagcttggctcggacaagggttccttgctcttctgttt
ggagatccttctgaagcgacagctctatttgcgcacgcctttgatatttctacctcgaca
tccacaattaccaaacagcagtatactcttagtctgttcgatcatctccttgcggatgca
tccatgtcaaacgaaatatcgcaactgattcgcccattctttgccctccagcagctccgt
gttcaggaaccttctaacctggcttttgagcatcttttggctttactagcagaacggata
ggggaataccaacaagcggatgatgctttgggagttgtctgcacaggagtggaagcggag
tacgaagtgaccgagtctgtgtcgtctctgacacactttgctcttgccaacgccgatgcg
gctcggatacatctcgcgaaacaggagtatgagcagtctgctgaaaaggcagagactgct
ctcacactctccgaaggggatgaaacggaaaatgccgatctcgagactattggccggctc
cgtctgtcagcgcatctcacggcgggcctagcatattattacatgaaatcaatggaccag
gctattgatagattccgggatgcccttcaggaatcaaacaacgacccggacgtgacttgt
ctgctcgcacaggtactgtgggccaagggcggaaaagaggagagcagtgtggctcgtgag
caactgttcgatagcgtcgagaagcatcccgatcatgtcgggtctgtaaccctgcttggt
gtgattgcattgctcgatgcagacgaagatgcgattgaggcagtgcatgctgatcttcaa
atgatgaggactaaagataacatcgaaatccacgaccgtgccaaagtagtcaaactacta
accgctatttctaccatgggtttttgcgcaaactag
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integrated database retrieval system
