Talaromyces rugulosus: TRUGW13939_05602
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Entry
TRUGW13939_05602 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRUGW13939_05602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_05602
Enzymes [BR:
trg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
TRUGW13939_05602
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TRUGW13939_05602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
ATP_bind_1
AAA_28
AAA_35
ABC_tran
nSTAND3
Motif
Other DBs
NCBI-GeneID:
55993099
NCBI-ProteinID:
XP_035344656
LinkDB
All DBs
Position
III:join(2137600..2137737,2137809..2138589,2138642..2139453)
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AA seq
576 aa
AA seq
DB search
MSLPGLELAEASVESQYAAPPPTQVVLRPGSEWRFEIAFGLTIQVKLLTGTAELFGTELA
QSQSYTFSGTKAAIYTWHGCTLEVSAGEGVALPNGFAPGGVSTEGGGGGGARGYGAGGCQ
SEYVAEETPMVEYANIHFALETMRQEAQDGGGRDGPRVLILGPESAGKTSLAKILTGYAT
KVDRQPVVVNLNPAEGMLSVPGTLTATAFRSMIDIEEGWGNSPMSGPSPVPVKLPLVYFY
PMKSPMDGEGGVFKSIVSRLALSVTARMAEDDDAREAGVIVDTAGILGQGTPTALELIHH
IITEFSISTILVMGSERLYSTMVKNYEQKPTSSASAAHSDERITVVKLSKSGGCVDRDEA
FMKAINDSQIRSYFFGNAAMATTASAAAASTMALPSISSSSKITLSPHTQQLDFDLLALY
NYTISSSSLDEDDEDEYDPSQFTTGDSYLPGGIDPSDYTPSQTTTTTEPSQTTTVTTTSY
DPAATTSSTLETPPLKKLTPPLTLALSNTLIAITYAPTNAPLKDIQDSSIMGFVYVSDVD
VEKKKLRVLAPVGGRMPAKALIWGKKWPGEVVGLVG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcctggattagagctagctgaagcatcagtcgagagtcaatacgccgcgcct
ccgcccacacaggttgttttgcgccctgggtctgaatggagatttgagattgcttttggg
cttacgattcaggtcaagctacttaccggcaccgcagagctgttcggaaccgagctcgca
cagtcccagagttacacgttttcaggcacaaaagccgcgatatatacctggcatggatgc
acgttagaggttagcgctggcgaaggggttgccctccccaacggctttgcgccgggcgga
gtgtcgacagaaggaggaggaggaggaggagctcgagggtacggcgccggcggttgccag
agtgaatatgtcgccgaagaaacaccgatggtcgaatacgccaacatacatttcgcgctt
gagacaatgaggcaggaagctcaggacggaggaggtcgagacggaccgcgagtgttgatc
ctggggcctgaaagtgctggcaagaccagcttggccaaaatcctcacgggatacgcaaca
aaagtcgaccggcagcctgttgttgtcaacttgaatccggcagaggggatgctcagtgtt
cctggcacactgaccgcgacggcgtttcgctctatgatcgatattgaagaaggatggggt
aatagtccaatgtctggaccgagtcctgtgcctgtgaagctacctctagtctacttctac
cccatgaagagtcccatggatggggaagggggtgtttttaaatcaattgtctcgagactc
gcgctatctgtgactgcgcgcatggccgaagacgacgatgcccgagaggctggtgtcatt
gttgacactgccgggattctgggccagggcactcccacggccttggagctgatccatcac
attatcacagagttttccatatccaccattctcgtcatgggatccgagcgtctatacagc
accatggtgaaaaactacgaacaaaaaccaacatccagcgcatccgccgcgcactcggac
gagcgcatcacggtagtaaaactgtccaaatccggcgggtgcgtggaccgcgacgaagca
ttcatgaaagccatcaacgactcccagatccgttcttacttttttggcaacgccgccatg
gcgacaacagcaagtgcagcagctgcatcaacgatggccctgccgtcaatatcttccagc
tcgaaaatcaccctttcgccgcatacccagcagctcgattttgacttgttggcgctgtac
aactacaccatttccagctcatcgctggacgaggatgatgaggacgagtacgatccttcg
caattcactacaggagattcatacctccccggcggtatcgacccttcagactacacgcca
tctcaaacaacaactacaacagaaccctcccaaaccaccacagtcacaaccaccagctac
gacccagccgcaacgacatcatctaccctagaaactcccccactcaaaaaactcaccccg
ccactcaccctagccctctcaaacacgctcattgcaatcacatacgctccgacaaatgct
ccactgaaagatatccaggattcgagtatcatgggctttgtgtacgttagtgatgtcgat
gtggagaagaagaaattacgtgtgctggcccccgtcggtgggaggatgcctgcaaaggcg
ctgatttggggcaagaagtggcctggtgaagttgtagggttggttggttag
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