Treponema sp. OMZ 838: JO41_01785
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Entry
JO41_01785 CDS
T03454
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
trm
Treponema sp. OMZ 838
Pathway
trm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
trm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JO41_01785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trm03021
]
JO41_01785
03400 DNA repair and recombination proteins [BR:
trm03400
]
JO41_01785
Enzymes [BR:
trm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JO41_01785
Transcription machinery [BR:
trm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JO41_01785
DNA repair and recombination proteins [BR:
trm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JO41_01785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
CysS_C
Motif
Other DBs
NCBI-ProteinID:
AIW88681
LinkDB
All DBs
Position
complement(396083..400414)
Genome browser
AA seq
1443 aa
AA seq
DB search
MRDIQDFDNIMIKLASPEAIRAWSYGEVKKPETINYRTLRPEREGLFCERIFGTTKEWEC
YCGKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDL
PVAALRSVLYYEKYIVIEPGGTDLKKNQLLSEDEYRDAQERYGGAFTANMGAEAVKTLLS
NLNLDELAAQLRMKMIEKGAKSDKRLLKRIEIVEHFRTSNNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLTRLMSLKAPDIIIRNEKRMLQEAVDALFDNSK
RKRVIKGSSNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVQKEIVSNIKKAKIMVEQEAPAVFAVLDEVISEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLL
DPANGKTIVYPSQDMVLGLYYLTKQRTLKEGQHIRRYSSVSEVMMAAEAGSIGWQELIKI
NYRGEEVETTPGRLAFNEEMPEGVPFVNTALDDKQIRKLIETVYRTKGTWVTVQMLDKLK
SVGYYYATFFGATLSMDDIIIPQEKSTMLEKANNEVLSIYSQYRGGHITQEERYNRVVEV
WSKTNEELTTIMMDTLAKDQDGFNTIYMMATSGARGSRNQIRQLAGMRGLMAKPSGDIIE
LPIRSNFKEGLNVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEEDCGT
INGIEYSAVKSGDEVIESLSERIVGKYTLERVEHPISHELLIDVNEYITDEIAAKIEEAG
VQTVKLRTVLTCESKHGVCVKCYGRNLARNKIVEIGEAVGIIAAQSIGQPGTQLTMRTFH
VGGTASSTTEENHITFKYPVIIKDILGTSIPLDDGNLLFTRRGTLLFEKVLKEYNLTAGD
SVAVQTGVRILRDDVLYTAADGTVVKSPLNAFAYLNDSTLYLTAPEQKTEIRNGSTVVVK
KGDYIPATSVIATFDPYNEPILAEQDGFVRFEDIIPGSTLEEDVNDETGVVERHISELKS
DMTLQPRVFISDESGNALGFYYLPDGAQLMVEEDTQIKAGTVIAKLAKAAARTQDITGGL
PRVSELFEARRPKSPAVLAQVAGTVSFKGLLKGKRIVIVKDHYGKDYKHLVPMSKRLLVR
DGDTVEAGERLCDGNLDPHDILAILGENALQNYLMNEIRDVYRMQGVSINDKHIGVIVRQ
MLRKIEVMSVGDTRFIYGQQVDKYQFHAENKRVTAEGGQPAIARPMFQGITKAALNIDSF
ISAASFQETTKVLTNAAIAGKTDELRGLKENVIIGHLIPAGTGMSQYRSVKLFDKNMSDL
DEQVNEILERRRRELEEAEAAEAQAEMEEDFDTDDELGYGDMESAETSYDEAPLDEPSGD
FED
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgagagatatacaagatttcgacaatattatgattaaattagcttcgcctgaagcgatc
cgcgcgtggtcgtatggcgaagtaaaaaaacccgaaacgattaactatcgtaccctgcgt
cctgagagggaggggcttttctgcgagcgtattttcggtactacaaaagaatgggaatgc
tattgcggtaagtttaaatcgatccgttacaagggtgttatctgtgaccgttgcggtgtc
gaggttactcactttaaagtacgccgcgagcgtatggggcatatcgaattggcagcgccc
gtttctcatatctggtactatcgatccgtaccgagccggatggggcttttgttggacttg
ccggttgcggcgctccgttcggtgttgtactatgaaaagtacattgttattgagccgggt
ggaactgatttaaagaaaaatcagctgttaagcgaagatgagtaccgtgatgctcaggaa
cggtacggcggcgcctttaccgcaaatatgggcgcagaagccgttaaaaccttattgagt
aacctaaatctggatgagcttgccgctcagcttagaatgaagatgatcgaaaagggcgca
aaaagtgataagcggcttttaaagcgcattgagattgtcgaacattttagaacgtcaaac
aataagcccgaatggatgatacttgatgttattccggttattccgcccgatttgcgcccg
atggtgcagctggacggcggacgctttgcaacttcggatttaaacgatttgtaccgccgt
gtcattcaccgaaatagccggttaacccgtttaatgagccttaaagcgcccgatatcatt
atccgcaacgaaaagcggatgctgcaagaagcggtggatgccttgttcgacaactcgaag
cggaaacgtgttattaagggctcttcaaaccgtccgctcaagtccatctccgatatgctt
aaaggtaagcagggacgtttccgtcagaacctgcttggtaagcgtgttgactattcggga
cgttcggttatcgttgtcggccctgaattaaagctgtggcagtgcggcctgccgactaag
atggcattggagctttttaagccgttcattatgaaaaagctcgttcaaaaagaaattgtt
tccaatatcaagaaagcgaaaatcatggttgagcaggaagctccagccgtttttgccgtt
cttgacgaggttatcagcgaacatcccgttatgctgaaccgtgcgccgaccttgcaccgc
ctcggtattcaagcgtttgagccggttcttgtcgaaggtaaggctattaaactgcacccg
cttgtttgtaaacccttcaatgcggactttgacggtgaccagatggctatccacgtaccg
cttacgcaagcggcgcagatggagtgttggacattgatgctttcgagcagaaacttactc
gaccctgcaaacggaaagacaatcgtgtatccgtcacaggatatggttctcggtctgtac
tatttaaccaagcagcggactttaaaggaaggacagcatatccgccgctattcttcggtt
tctgaggtgatgatggctgcagaggccggctctatcggttggcaggaacttatcaagata
aactaccgcggtgaagaagtggaaacaacccccggacgccttgctttcaacgaagaaatg
cctgaaggcgttccgtttgtcaataccgctttggatgataagcaaatccgcaagttgatc
gaaacagtgtaccgcacgaagggaacctgggttaccgttcagatgctggataagcttaaa
tccgtcggctattactatgcgactttcttcggcgcaacattgagtatggatgatatcatt
atcccgcaggaaaaatcgaccatgctcgaaaaggcaaataacgaagttctttctatatac
agtcagtatcgcggcggccatatcacgcaggaagagcggtataacagggtcgtcgaggtg
tggtcaaagacaaacgaagagttgaccacgataatgatggatacactcgcgaaggatcaa
gacggctttaatacgatttatatgatggcgacctccggtgcgcgcggaagccgaaatcag
atccgtcagctcgccggtatgcgcggtttgatggctaaaccgagcggtgatattatcgag
ttgcccatccgttcaaacttcaaagaaggtttgaacgttatcgaattctttatttctacg
aacggtgctcgtaaggggcttgccgataccgcgttgaagaccgcagatgccggttatctg
acgcgccgtctggtcgatattgcacaggatgttgttgttaatgaggaagattgcggcacc
atcaacggtattgaatactcggcggtaaaatccggggatgaggttatcgaatctttgagc
gaacggattgtcggtaaatatacgcttgagcgggtagagcacccgatttcgcatgagctt
ttaatcgacgtaaacgaatacatcaccgatgaaattgctgcgaaaatcgaggaagcgggc
gtgcagaccgttaagctccgcacggtattaacctgcgagtccaaacacggcgtctgcgtg
aagtgctacggacgcaatcttgcccgcaataagattgtcgaaatcggtgaagcggtcggt
attattgcggcacagtctatcggtcagccgggtactcagttgacgatgcgtaccttccac
gtcggaggtacggcaagcagcacgaccgaagagaatcatatcacctttaaatatcccgtc
atcatcaaggatatcttgggaacatccattccgcttgatgacggcaatctgctgtttacc
cgccgcggtacgcttctgtttgagaaagtgcttaaagagtacaatcttaccgcaggagat
tccgttgcagtgcaaacgggtgtccgtattctgcgcgacgatgtgttgtataccgctgcg
gacggtacagtggtaaaaagcccattgaatgcttttgcttatttgaacgattcgacgctg
tatttgacagctcccgaacaaaaaaccgaaatcaggaacggttctaccgttgttgtcaaa
aaaggcgattacataccggctacttcggttattgctaccttcgatccgtataatgaaccg
attcttgcggagcaagacgggtttgtccggtttgaggatattatccccggttcgaccctc
gaagaggatgtcaacgatgaaaccggcgtcgtggagcgccatatttccgaattgaaatcg
gatatgaccttacagccccgtgtatttatctccgatgaatccggtaacgcactcggcttc
tattacctgccggatggcgctcagctgatggtagaagaagatactcagattaaggccggt
acggttatcgcaaaacttgcgaaggctgctgcaagaacgcaggatattaccggtggtttg
cctcgtgtttcggagctctttgaagctcgccgtccgaaatctccggctgtgcttgctcag
gtcgccggtacggtttcgtttaaaggcttattgaagggtaaacgaattgttatcgtgaag
gatcattacggtaaagattataaacacttggttccgatgtccaaacggttgcttgtccgg
gacggcgataccgttgaagcgggcgagcggctgtgcgacggaaaccttgatccgcatgat
attctcgcaattttgggtgaaaatgcactccagaattatttgatgaatgagatccgcgat
gtctatcggatgcaaggcgtttctatcaatgataagcatatcggcgttattgtccgccag
atgcttcggaaaattgaggttatgtctgtcggcgatactcgctttatctatggtcaacag
gttgataaataccaattccatgcagagaataagcgtgttactgcggagggcggtcagcct
gctattgcacgtccgatgttccaaggtattaccaaggcggcattgaatatcgattcattc
atttcggcggcttcgttccaagagacaacgaaggtcttaacaaatgctgctattgccggt
aaaaccgatgagctgcgcggcttaaaggaaaacgttattatcggccatctgattcccgcc
ggtaccggtatgtcgcagtatcggtcggttaagctcttcgataagaatatgagcgacttg
gacgagcaggtaaacgaaatcctcgaacggcgcagacgagagttggaagaagcggaggct
gccgaagctcaagcggagatggaagaagacttcgatacggatgacgaactcggttatggg
gatatggaatccgctgaaacttcttatgatgaagcgcctcttgatgaaccttcaggagat
ttcgaggattga
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integrated database retrieval system
