Trichomycterus rosablanca: 134301454
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Entry
134301454 CDS
T09921
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134301454 (chd5)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134301454 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
134301454
NCBI-ProteinID:
XP_062842210
LinkDB
All DBs
Position
24:6594843..6642984
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AA seq
1983 aa
AA seq
DB search
MPGSLSNEEEGQDDLDFEDDVPDEDDEGNRVRDLSPVERFFSDDDSIKQKKKKPSKQKEG
RTPKVKKKKKEGGFSEHDMSGREEQHSDSESSSYGTLKKKKKKPREKKEKKAKWKKNEED
EDDDDDDGNMKEPKSSSQLMEEWGLEDVQYVFSEDDYKTITNYKAFSQFLRPLIAKKNPK
IPMSKMMTVLGAKWREFSANNPFKGSSATAVAAAVAAAVETVNITPSISISGVQQLSPTG
QIKKAKTKEGKGPSARKKSKTPKDTKKKPKAKKSKLKAGQGSKRKKASSSEDDFIDDFSD
FDDISIHSASVRSDASGAPKKKGRRGRKKRKREDGDGYETDHQDYCEVCQQGGEIILCDT
CPRAYHLVCLEPELEKAPEGKWSCPHCEKEGIQWEAKEDEEEEEEPVGEEEDDHMEFCRV
CKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKILHWMWGDPP
LPPEPPSTQDGEKKEDGMTRPPLKGRPERLLFVKWAGLSYWHCSWVNELQLELYHTVMYR
NYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPQYAAMEERFYRYGIKPEWLIIHRIANH
SFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYEPFKQAYWDHREQMLGEDHRPLVVRK
ERRSKEEVKRKEALPETSVVDPTVKFDQQPWYIDATRGTLHPYQLEGLNWLRFSWAQSTD
TILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPGFYVVTY
TGDKDSRAVIRENEFTFEDSAVKTGRKVFRMKKDTPVKFHVLLTSYELITIDQAILGSIT
WACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNN
LDGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY
KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNMLV
KSSGKLTLLQKMLKKLKDNGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGSITGGLRQ
EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQN
KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEEL
FKDDVEAMAGDSKEGEEGSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYLSSFKVAQYM
VREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDT
SQEDQEWRDGLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKNERDKPLPPLLARVG
GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLKGKSEKEFRAYVSLFMRHLC
EPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSSPDLIPPGLDL
KKLTESLSSDPNTPVPASPAPTQPSTPVPPDKTEGGSAAQEDKESAEQESTKAAESEEAE
SIPPPEKTNESEEQKKRTAEEKPREETEKKDNTPTESEPASKQSQPTSVQTEQSTKQTPP
TGEQSKDMENISEKIGSDPSSVKPENKEQKAVSQESKSDDTPESQLNGEKESKDEVDEGQ
KDEKPGVKTRFMFNIADGGFTELHTLWQNEERVAVSSGKMYDIWHRRHDYWLLAGIITHG
YARWQDIQNDPRYAILNEPFKTEMNKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYL
NMSQDSTHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMK
ADVTRLPSMLSRIPPVSARLHMSERSILSRLTNREPQPQPPFSQGSFACSSMYSNSFGGG
FRGPAGAAMVNYSQMPLGPYVSVSNGPPTPSSHLDKKSSDILRDMSPSDLKSNKPSDVIC
IED
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatccctgagcaacgaggaagagggccaggacgatttggattttgaagacgac
gtgccagatgaggatgatgagggcaaccgtgtccgtgacctttcaccggtggagcgcttc
ttttccgatgatgactccatcaaacagaaaaagaagaaacccagtaagcaaaaggagggc
aggacgcccaaagtaaaaaagaagaagaaagagggtggcttcagcgaacatgatatgtca
ggcagggaggaacagcactcagacagcgagagcagcagctacggcacactgaagaagaaa
aaaaagaaacccagagagaaaaaggagaagaaggccaaatggaagaagaacgaggaagat
gaagatgatgacgacgatgatggaaatatgaaggagcccaagtcttctagccagctgatg
gaagagtggggtcttgaggatgtgcagtacgttttctctgaggatgattacaaaaccatt
accaactacaaggccttcagccagtttctcaggcccctcattgccaagaaaaaccccaaa
attcccatgtccaaaatgatgacggtgttgggtgccaagtggcgagaattcagcgctaac
aacccgttcaaaggcagttcggcgacagccgtagcagccgcggtggctgcggcggtggaa
acggtcaacatcactccctctatctccatcagcggcgtccaacagctctctccaacaggg
cagatcaaaaaagccaagaccaaagagggcaaagggcctagtgctagaaagaagagtaag
actccaaaggacacgaaaaagaaacccaaagccaagaaatccaaactgaaggccggccag
ggcagcaagaggaaaaaagcctcctcaagcgaggacgattttatagacgacttctcagac
tttgacgatatcagcatccacagtgcctccgtcagatccgatgcttcgggggcaccaaag
aagaaaggacgacgaggacgcaaaaagaggaaaagagaggacggagatggctatgagacg
gaccatcaggactactgcgaggtgtgtcagcagggaggcgagatcatactgtgtgacacc
tgccccagagcgtatcacctggtgtgtctcgaacccgagctggaaaaagctcctgagggc
aagtggagctgcccccactgtgaaaaggaaggtattcagtgggaagccaaggaggatgaa
gaagaggaggaggaaccggtgggagaggaagaggatgaccacatggagttctgtcgagtt
tgtaaggatggaggcgagctcctgtgctgcgacacgtgcccttcctcctaccacatccac
tgcctcaacccacctctgcccgaaatccccaacggagagtggctgtgcccacggtgcatg
tgcccccctcttaaagggaaagttcagaaaatcctgcactggatgtggggggatcctccc
ttaccccccgagcctccgtccactcaggatggagagaagaaagaagacggaatgaccaga
cctcctctgaagggtcgaccagaaaggctgctgtttgttaaatgggccggtttgtcctac
tggcactgttcctgggtcaacgagctacagctggaactctaccacactgtcatgtaccgg
aattaccagcggaagaacgacatggacgagcctccaccgttcgattacggctcaggagaa
gaggagctcaataatgagaagaggaagagcaaagacccacaatacgccgccatggaggag
cgcttctaccgctacggcatcaaacccgagtggctcatcattcacaggatcgccaaccac
agttttgacaaggatggagacgtccactacttgataaaatggagagacctaccgtacgat
cagtgcacttgggaggtggacgatttcgatgtcccggagtacgagccttttaaacaggcc
tactgggaccacagggagcaaatgctgggcgaagatcatcgtcccttggtcgtgaggaaa
gaaaggaggtctaaagaggaagtgaaaaggaaagaagctctacctgagacttcggttgtg
gatcccactgtgaaattcgatcagcagccgtggtacatcgacgcgaccaggggaactctg
cacccataccagctggaagggctgaactggctgcgtttctcctgggcacagagcaccgat
accattctggctgatgagatgggcctgggcaagactgtacagactatagtgttcctctat
tcactctacaaagagggtcattccaaggggccgtttctggtcagcgccccgctgtccact
atcatcaactgggagcgagagtttgagatgtgggcgccaggcttttatgtcgtgacctac
accggtgacaaagacagccgggcggtgatacgagagaacgagttcacgtttgaggacagc
gccgtcaaaacgggacgcaaggttttccgcatgaagaaagacacgcctgtgaagttccac
gtgctgctgacctcgtatgagctgatcaccattgaccaggccattctgggctccatcact
tgggcgtgtcttgtagtagatgaagcgcacagactgaaaaataaccagtccaagttcttc
aggattctgaatggctataagatttattacaagctgctgctgaccggtacgcctctgcag
aacaatctagaagagttgttccacctgctcaacttcctcactccagagaggttcaataat
ctggacggctttctggaggagttcgccgacatctctaaagaagatcagatcaagaagcta
cacgacctgctggggccacacatgctcaggaggctgaaagctgacgtcttcaagaacatg
ccggctaaaacggagctgatcgtgcgagtggagctcagtcccatgcagaagaagtactac
aagttcatcttgacgcgaaactttgaggcactgaactccaagggaggtggaaaccaggtg
tctttacttaacatcatgatggatctgaagaagtgttgcaatcatccctacctgttccct
gtggcggctgtggaagccccagtgttacccaatggctcttacgatggcaacatgctggtg
aagtcctcaggcaaactcactctgctgcagaaaatgctcaaaaaactcaaagacaacggg
catcgcgtcctcatcttttctcagatgactaaaatgctggatctgttagaggacttcctg
gagtatgaaggctataaatacgaacgtatcgacggcagcatcacaggtgggctgcgtcag
gaggccatcgatcgtttcaacgctccgggggctcagcagttctgcttcctgctgtctaca
cgtgctgggggattgggaatcaatctggcaaccgctgacacagtcgtcatctatgactcc
gactggaacccgcataatgatattcaggcatttagccgagcgcatcgtattggacagaat
aagaaagtgatgatctaccgctttgtcacgcgggcatccgtggaggaacggattacccag
gtagccaagcgcaagatgatgctcactcacctagtagtgcggccaggattgggttccaaa
acaggttccatgtccaaacaggagctggacgacatcctcaagtttggcacagaggagctt
ttcaaagacgacgtggaagctatggcaggggacagtaaggaaggagaggagggcagcgtg
atccactacgacgataatgccatctccaagctgttagaccgcagtcaggatgccacagag
gacacggagatccagaacatgaacgaatacctcagttcttttaaagtggctcagtacatg
gttcgagaggaggacggagaggaggaggtacaaagggagatcattaagcaggaggagaac
gtcgatcctgactactgggaaaaactccttcggcatcattacgagcagcagcaggaggat
ctggcgcgcaatctgggcaagggcaagcgcatccgtaagcaggttaactacaacgacacc
tctcaggaggaccaagaatggcgtgacggtctttcagacaatcagtccgagtactccgtt
ggctccgaggatgaagatgaagattttgaagaacgacctgaaggaggacgccggcagtct
cgcaggcagctgaaaaatgagcgggacaaacccctgccaccactactagctcgagtagga
ggcaacatagaggtgcttggtttcaatgcccgtcaaagaaaggccttcttaaatgccatc
atgcgttggggcatgcctccacaagatgctttcaactctcactggttagtcagagacctg
aagggcaaaagtgagaaagagttcagagcgtacgtgtcactgttcatgaggcacctgtgc
gaaccaggagcggacggggccgagacatttgcagatggcgtcccgagggagggtctgtcc
cgacaacacgtccttaccaggattggagtcatgtctttagttcggaaaaaggtgcaggag
tttgagcatgtgaatgggaaatacagcagtcctgatcttattcctcctggactggacctg
aaaaaactcacagagagtctttcatcagaccccaacactccggtaccagctagtcctgca
ccgacacagcccagcactcctgtacctccagacaaaaccgagggtggctctgctgcacaa
gaagacaaagagagcgctgaacaggagagcaccaaagcagcagaatctgaggaagctgag
tccattcccccacctgaaaagaccaacgaaagtgaagaacagaaaaaacgcactgctgag
gagaaacctcgtgaagaaactgagaagaaagacaacacacccactgaatcagagccagca
tctaaacaatcccagccaacatctgtacagacagagcagtctaccaagcagacaccacct
acaggggagcaaagtaaagacatggagaacataagtgagaagattggaagtgacccttct
tctgtaaaaccagaaaacaaagaacaaaaagccgtttctcaggagtcaaaatccgacgat
actccagaaagtcagctgaacggagagaaagaatcaaaggacgaggtggatgagggacaa
aaagatgagaagcctggtgtgaagacacgcttcatgttcaacattgcagacggaggcttt
acggagctgcacacgttgtggcaaaatgaagagcgcgttgccgtgtcatcgggcaagatg
tacgacatttggcaccggcgccatgactattggcttttggccggcatcataactcacggg
tacgcccgctggcaggacatccagaacgacccgcgctatgccatccttaacgagccattc
aaaaccgagatgaacaaagggaactacctagagatgaagaacaagttcctagcgcggagg
tttaagctgttggagcaggcactggtgatcgaggagcagctgagacgggcagcttatctg
aacatgagtcaggactccactcatccagccatggcgctgaacactcgcttcgccgaggtc
gagtgcctggcagagtcacaccagcatctgtcgaaagagtctctggctggaaacaagcct
gcgaatgcggttctgcacaaagtgttgaaccagctggaggagctgctgagtgacatgaag
gccgacgtgacgaggctcccatccatgctctcccgcatccctcctgtatccgctcgcctc
cacatgtcggagaggagcatcctgagccgcctcaccaaccgtgagcctcaaccccagccg
cctttttcccagggatcatttgcttgttcttcaatgtacagtaacagttttggaggagga
ttcagggggcctgctggtgctgccatggttaactacagtcagatgcctcttggtccctac
gttagtgtgtctaatggtcctccgacccccagcagccatttggataaaaaatccagtgat
attttgagagacatgtctccttcagacctcaaatctaacaagccctctgatgtcatctgc
atcgaagactag
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integrated database retrieval system
