Trichomycterus rosablanca: 134324728
Help
Entry
134324728 CDS
T09921
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134324728 (scn1laa)
Ion channels [BR:
trn04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134324728 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
Lustrin_cystein
Peptidase_S51
Motif
Other DBs
NCBI-GeneID:
134324728
NCBI-ProteinID:
XP_062862727
LinkDB
All DBs
Position
12:complement(7409666..7436583)
Genome browser
AA seq
1956 aa
AA seq
DB search
MAQMLTPPGPASLRLFTRESLKAIENRIAEKAKKTEEEQEKNINIVLPRKPNSDLVAGKK
LPFIYGDIPKEMVSSPLEDIDPFYRNQKTFLVLNAGKNIFRFNATSALFILSPFNPLRKL
SIKILVHSLFNMFIICTILTNCVFMTYRETSKTTEYVFTGIYTFEALLKILSRGFCIGEF
TFLRDPMNWLDFVVIVMAYVTMFLPDMGGISALRSFRVVRTLKTISAIPGLKTIIGALFQ
SVKKLKDVMILTLFCLSVFALVGLQLFMGVLRNKCVKIPSNVTVSENGTMYISNTTNVFD
PTDYINYINSVNFTNFKNYFYVIDGKTDPLLCGHSSDAGKCPDGFFCHMASRNPNFGYTS
FDNFAWAFLSLFRLMTQDCWEALYQQTLRASGKTYMIFFVLVIFLGSFYLVNLILAVVAM
AYDEQNQATLEEAQQKEEEFQAMMEQLKRQQMDAQVCLAVALCEGGSLSGGSSSEASKLS
SKSAKERCNRRKKRKQKEEDGEKGDDEKVHNSDPEISARRLSFCLSLDGNQLSYERTNQS
PHQSLLSIQGSVFTPRRNSRASIFTFRGRLGSENGFADDEHSMFEDAGNRRGSLFLPRRS
ERLYSTGSINPRFLLSPTGKVHCSMDCNGKVSGNSLPSSPAGLLSELTNGTEEYRRRYYS
EQPSPGFLNDHTARERALSAASFIPNTIEELKESRQKCPPRWYKFAQKFLIWNCCPAWMK
MKKVVYLIVMDPFADLTITTCIVMNTVFMAMEHDTRDENFKYMLNVGNYVFTGVFTAEMI
LKIIAMDPYYYFQKCWNIFDSVIVTMSVLELLLQKLPGMSVLRSFRLLRVFKLAKSWPTL
NMLIKIIHNSVGALSNLTLVLAIIVFIFAVVGMQLFGNLYSNNKSKISPDERPRWHMMDF
FHSFLIVFRVLCGEWIESMWDCMEVAQKSMCLTVFLSVMVIGNLVVLNLFLALLLSSFSA
DNLAATKTDKEMNNLKIAVGRIRKGLIFIKDSLCRICRSSCITGTKKVIKEEGLKDGKKL
TDVSTHTTVELIKDGSYIKELSGEDSASEDFIAECSVTITVPIATADSDPECHNMDDCSS
YSSDIEEVKELSEVSSSVGSTVDLRHPRERRESLDFELEDSMDPEACFTNRCVRSFACCQ
VNVEKGRWKTWWAIRRTSYRIVEHNWFESFIIFMILLSSAALAFEDIHIDKWKTIKTILE
YADKVFTYVFILEMLLKWLAYGFAKYFTNAWCWLDFLIVGVSLISLAASALNYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALFGAIPSIVNVLLVCLVFWLIFSIVGVNMFAGKF
YECVNITTGARFNDSIVTNSTDCIQLGNDTARWKNLKINFDNVGAGYLALLQVATFKGWM
SIMYAAVDSYKLDEQPKFEQNQYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGG
QDIFMTEEQKKYYNAMRKLGSKKPQKPIPRPSNKFQGYIFDLVTNQAFDIVIMVLICLNM
ITMMVESADDSKEKKNVLQKINLFFVGIFTTECVLKMISLRHYFFTVGWNVFDFIVVILS
IVATFVAEIIKNLFPPTLIRVVRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLL
LLLVMFIYAIVAMSQFAYVRKEDGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNK
KKPDCDPQKEHPGSQVKGDCGNPTIGIIFFVSYIIICFLIVVNMYIAVILENFGVATEES
TEPISGDDFEMFYEVWEKFDPLATQFIEYKKLSDLADALSPPLRIPKPNKVQLISMDLPL
VSGERIHCLDILFALTKRVLGDSGNTDLLRGQMEDRFMASNPKVSYEPITSTLRHKQEYM
SAVIIQNAYRKHNFRQNVTKNIKTLKKSVQDNGTILNKDSVVINGCNNHSTSDKTETTSS
TAVPPSYDSVVQSDKDKYEKDHREKEVKCKDKKHSK
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggcacagatgcttacaccaccgggaccagccagcctccgcctgtttacccgagaatca
ctcaaggccattgagaatcgaattgcagagaaagccaagaagactgaagaagagcaggag
aaaaatattaacattgtgcttccacgaaaacctaacagtgacctggtggcaggaaagaaa
ctgccatttatctatggagacattcccaaagaaatggtgtcttcaccactggaagacatc
gacccattctatcgcaatcagaaaaccttcttagtgttaaatgcaggtaagaatatcttc
agattcaatgccacctctgccttgtttatcttaagtcccttcaaccctctccgaaaactg
tcaatcaagatccttgtgcattcattatttaacatgtttattatatgcactattcttacc
aactgtgtgttcatgacttatcgtgagacttccaagacaacagagtatgtctttactgga
atatatacatttgaagcactattaaagatattatccaggggattctgtataggagagttc
acctttctcagggacccaatgaattggctggacttcgttgttattgtgatggcatatgta
acaatgtttttgcctgacatgggtggaatctctgccctgaggtctttcagagtggtccga
acactgaaaacgatatcagccatcccagggctgaagaccattataggagctctgtttcag
tcagtaaaaaagcttaaagatgtgatgattctgaccctcttttgtctaagcgtatttgct
ttggttggcctgcagctttttatgggcgtcctgaggaataaatgcgtcaaaataccatct
aatgtcacagtttctgaaaatggaaccatgtacattagtaacacaacaaatgtgtttgac
cctacggattatattaattatattaattctgttaattttactaatttcaagaattatttt
tatgttattgatggaaagacagatcctttgctctgtggacacagcagtgacgcaggaaaa
tgtccagatgggtttttctgtcacatggcgagcagaaatccaaattttggctataccagc
tttgataactttgcctgggccttcctctctctcttcagactaatgactcaggactgctgg
gaggctctctaccaacagactcttcgtgcttcaggaaagacctacatgatcttctttgtg
ctggtgatttttctgggttccttctaccttgtaaatttaatcctggctgtggtggccatg
gcctacgatgaacagaaccaagccacattagaggaggctcagcagaaagaggaagagttt
caggcaatgatggagcagctcaagaggcaacagatggatgcacaggtttgtttggcagtt
gcactgtgtgaaggtggcagtcttagtggaggaagttcttctgaggcttccaaactcagt
tccaaaagtgccaaagaaagatgcaaccgaagaaagaagagaaagcagaaggaggaggat
ggcgagaaaggggatgatgagaaggttcacaattctgaccctgagatcagcgctagaagg
ctcagcttttgcttgtctttagatggaaaccaattgtcatatgagaggacaaatcagtct
cctcatcagtcacttttaagtatccaaggctctgtcttcaccccacgacgcaacagtaga
gctagcatttttacctttcgtgggcgcctgggatcagagaatggctttgccgatgatgag
cacagtatgtttgaggatgcaggcaatcggcgaggttcattgttcctgccgcggcgttct
gagcgcctttatagtaccggcagtattaacccacgctttcttctgtctccaactggaaaa
gtgcactgctccatggactgcaatgggaaagtgtctggaaactctctgcccagctcgcct
gctggcctgttgtctgagctgactaatggtacagaggagtacaggaggagatattattct
gaacaaccatcaccaggatttttaaatgatcatacagccagagagagagctttgagtgca
gccagctttattcccaacactattgaagagctgaaagagtcaaggcaaaagtgccctcca
cgttggtataagtttgcacaaaaatttctcatttggaattgttgtccagcatggatgaag
atgaagaaagtagtgtatttgattgtgatggacccatttgcggatctgactatcaccacc
tgcattgtaatgaacacagtatttatggccatggagcatgacaccagggatgaaaatttt
aaatacatgcttaatgtgggaaactatgttttcacaggggtctttacagctgagatgatc
ttgaagatcattgcaatggatccttattactacttccaaaaatgctggaatatatttgat
agtgttatagtcactatgagtgtcttggagctcttgctgcaaaaattaccagggatgtct
gttctcaggtctttccgcttgcttagagtttttaagctggccaagtcatggcccactcta
aacatgctgatcaaaatcatacacaactcggtgggtgcccttagcaacttgacacttgtc
ctggccatcattgtcttcatctttgctgtagtgggcatgcagttgtttggaaacctctac
tccaacaataagtctaagatctcacctgatgaaaggcctcgctggcacatgatggatttc
ttccattcctttttgattgtgtttcgtgtgctgtgtggggagtggattgagagcatgtgg
gactgcatggaggtggctcaaaagagtatgtgtctgaccgtcttcctctcagtcatggtg
atcggaaatcttgtggttttgaacctgtttctggccttgctgctcagctcctttagtgca
gataacctggcagccacaaagaccgacaaggaaatgaacaacttgaaaattgctgtgggc
cgcattcgtaaaggtcttatatttattaaagactcactttgccgtatttgccggagcagc
tgcattacagggacaaaaaaggtaataaaggaagaaggcttaaaagatggtaaaaagctg
actgatgtttccacccataccacagtagagttgatcaaagatggctcgtatattaaggag
ctatcgggggaagacagtgcctctgaagattttattgctgaatgcagtgtgactatcact
gtacctatagcaactgcagactctgatcccgagtgtcacaacatggatgattgcagcagt
tattcttcggacatagaggaagttaaagagctgtcagaggtgagctcttcagtgggcagc
acagtggaccttcggcacccgagggaaagaagagaatcacttgactttgagttagaagac
tctatggatccagaggcctgcttcacaaacaggtgtgtgcgcagtttcgcctgttgccag
gttaatgtggaaaaagggaggtggaagacatggtgggccatcaggcgtacctcttacagg
attgtggagcacaactggtttgagtcgtttattatctttatgatcctgctgagcagtgca
gcactggcctttgaagacatacacatcgataagtggaagaccataaagacaattctggaa
tatgcagataaagtgtttacctatgtcttcatattggagatgcttttaaaatggctggca
tatggatttgctaaatattttaccaatgcctggtgttggcttgacttcttgattgttggg
gtctctctgatcagcttagcggccagcgcccttaattattctgagcttggagccatcaaa
tctctccgtacactgcgggcactaagacctcttcgagctctatcacgctttgaaggcatg
agggtggttgtcaatgctctttttggtgcaattccttccattgtgaatgtgctgctggtc
tgcctcgtcttctggcttatcttcagtatagtgggcgtcaatatgtttgctggcaagttc
tatgaatgtgtaaacattaccaccggagcccgctttaatgactccattgttaccaacagc
acagattgtattcaactgggtaatgatacggcccgctggaaaaatctgaaaatcaacttt
gataatgttggtgcaggatatctggccttgctgcaagtggcaacttttaaaggatggatg
tctattatgtatgcagcagtagattcctacaagttggatgaacagcctaagtttgagcaa
aatcaatacatgtacatctactttgtgatcttcatcatatttgggtctttcttcacatta
aacctctttattggtgtcattattgataactttaatcagcagaagaaaaagtttggaggt
caggatatttttatgacagaagaacaaaaaaaatattacaatgccatgaggaaactgggg
tcaaagaagccacaaaaaccaattcctcggccatcaaacaagttccaggggtatatattt
gacctggtaacaaatcaagcttttgacattgttatcatggttcttatatgccttaatatg
atcacaatgatggtggaatcagcagatgattcaaaagagaagaaaaacgttctacaaaag
attaatttgttttttgttggaatctttacaacggaatgtgtgctaaaaatgatctcactt
cgacattatttcttcactgttggctggaatgtctttgactttatagtggtcattctctca
atagttgccacatttgttgctgagatcattaaaaatctttttcctccaaccctaattcgt
gtcgttcgcctggctcggattggccgaattctgcgccttatcaagagtgccaagggaata
cgcacccttttgtttgctttgatgatgtcccttccagccctatttaacatcggtcttctt
cttctgttagtaatgttcatctatgctattgttgcaatgtcacaatttgcctatgtcaga
aaggaggatggaatcgacgacatgtttaactttgagacttttggcaacagcatgttgtgt
ttgtttcaaattaccacctctgcagggtgggatggtctgttggcacccattctcaataaa
aagaaacctgattgtgaccctcaaaaggagcaccctggcagccaagttaaaggtgactgt
ggcaacccaactattggtatcatattctttgtgagttacatcataatatgcttcttgatt
gtggtaaacatgtacatagccgtgattctggaaaactttggtgtggccacagaggagagt
acagagccgataagtggggacgattttgagatgttctatgaagtgtgggaaaaatttgac
ccattggcaacacagttcatagagtacaaaaagttgtctgatttggctgatgctctcagc
cctccgcttcgcatccccaagcccaataaagtccagcttatcagtatggacctaccacta
gtaagtggagagagaatacattgcctggatatcttgtttgctttaactaaacgtgtcctt
ggggatagcggtaacacagacctgctccgggggcaaatggaagaccgctttatggcttct
aaccccaaggtatcctatgaacccattacctcaactctacgccataagcaagagtacatg
tcggctgtcatcattcagaatgcctacaggaagcataacttcagacagaatgtaacaaag
aacataaaaacattaaagaaatctgtacaagacaatggaacaattttaaataaggactca
gtggttattaatgggtgtaataaccattccacttctgacaaaactgaaacaacatcttct
actgctgtcccaccatcatatgatagtgtagtgcaatctgataaagacaaatatgagaaa
gaccatagggagaaggaagtgaaatgcaaggataagaaacacagtaaatga
DBGET
integrated database retrieval system
