Trichomycterus rosablanca: 134333213
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Entry
134333213 CDS
T09921
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134333213 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134333213 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134333213 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
trn00535
]
134333213 (col9a3)
Proteoglycans [BR:
trn00535
]
Extracellular matrix (ECM) proteoglycans
Others
134333213 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134333213
NCBI-ProteinID:
XP_062871159
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All DBs
Position
19:complement(27964057..27989524)
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AA seq
678 aa
AA seq
DB search
MAMFSALGLLLLCQLLASSLAQAPGPQGQPGPQGPPGPPGKDGIDGKRGPAGLPGKAGPK
GKAGVPGTAGKSGLPGLPGIDGLPGPDGPQGKDGPPGSAGDSGPPGPPGPPGRGRPGAPG
LSGANGLPGGVGPQGSTGPEGLPGLPGPPGPDGPPGIPGGLPEGGGELLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGEPGKDGEKGDQGPPGPSGISGTVGLQGPRGLRGLRGPGGAVG
DRGLPGFRGKPGIPGVIGKIGDAGEKGPQGFKGPKGEMGKVGPKGLGGPPGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRIGTSGEKGPNGLPGLPGKAGGKGAKGGVGNQGEMGEAGPDG
EPGIPGEIGVPGERGEAGPRGVAGGIGLIGNPGSQGVKGFQGIKGAIGDPGLPGPTGLRG
GFGELGPTGAAGPKGDIGMAGSDGLPGENGEAGPFGPTGQKGESGKNGELGPKGVPGPQG
ETGARGLPGKPGLMGFHGEPGSPGVAGKTGVAGKLTSEQHIRELCGFMIDGQIAQLAANL
RRPLAPGAVGRPGPAGPPGKPGDAGTMGLPGASGAPGYRGLPGDLGYPGPRGDAGQPGDK
GPVGKAVDGPVGDQGEPGLPGVHGFVKDGRDGAPGDPGESGEPGRPGRTGHQGPPGICDT
SACQGAAHHGKSSSPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttctcagctctggggcttctcttgctctgccagctgctggcatcgtccctg
gctcaggcacccggaccgcaagggcaacctggacctcaaggaccaccgggaccccctggg
aaagatggcattgatgggaagcgaggaccggccggacttcctggaaaagctggtcctaaa
ggaaaagctggagttccggggacagcagggaaatctggactacctggacttcctggaata
gatggtttgccgggtcctgatgggcctcaagggaaggatggacctccaggatctgctggt
gattcaggacctcccggcccacccggaccccccggcagagggagacctggagcccctggg
ctgtctggagctaatggactgccgggtggtgtaggacctcagggatccacgggaccagag
gggcttccaggacttccaggtccaccaggtcctgatgggccacctggaatacctggagga
cttcctgaggggggtggagaattgttgtgtcctgctatctgtcccccaggccccccgggc
ccacctggaatgccaggttttaagggacacacaggacacaaaggagacaaaggagagcct
ggaaaggatggtgagaagggtgatcaaggtccacccgggccctctggaatctcaggaact
gttggtcttcagggtcctcggggtctgagaggacttcgtggtccaggtggagccgtcgga
gacagaggtttgccaggttttagagggaagcccggtattcctggtgtcatcgggaaaata
ggtgacgcaggagagaaaggaccacagggtttcaaaggacctaaaggagaaatgggaaaa
gtgggtcctaaagggctggggggacctccaggtcctaaaggagaaccgggaatcccaggc
agagacggcaaagatggcactcagggacttgatggagagaagggcgatgctgggcgtata
ggcacctctggagagaaagggcccaacggtttgcctggtttgccaggaaaggctggcgga
aaaggagccaagggaggagttggtaatcaaggagaaatgggagaagcaggaccagacgga
gagccaggtattcctggtgagattggtgtcccaggagaacgaggtgaagctggacccaga
ggcgtcgctggaggcatcgggctgatcggaaatcctggatctcagggagtcaagggattc
cagggaattaaaggtgccatcggagatcccggacttccaggtccgactggactcagagga
gggtttggtgaactgggtccaacaggagctgcaggacctaaaggagacatcggtatggct
ggaagtgacggactaccaggcgagaacggagaagcgggtccattcggccctactggccaa
aaaggagagtctggaaagaacggtgagctgggtcctaaaggagtaccgggaccacaggga
gagactggagcacgagggctgcctggaaaaccaggcctgatgggcttccatggagaacca
ggttcaccaggtgttgctgggaagacaggcgttgccggaaaactgacgagtgagcagcac
atcagagaactgtgtggcttcatgatcgatggccagattgcccagctggctgctaacctg
aggagacctttggctcccggcgccgtgggtcgacccggtcccgctggacctccgggaaaa
ccaggagatgcaggaacgatgggcctccccggagccagcggtgctccaggatacagagga
cttccgggagatcttggttatcctggtcctagaggtgatgctggacagcctggtgataag
ggacctgttgggaaagctgttgatgggccagtaggtgaccaaggagaaccaggtctccca
ggagtacacggcttcgtcaaagacggacgtgacggcgcacccggagatccgggtgagtca
ggagaaccgggcaggccgggcaggacgggacatcaaggacctccaggaatctgcgataca
tcagcctgccagggtgcagcgcatcacgggaaatcatccagccccaaaaatcattaa
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