Triplophysa rosa: 130551873
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Entry
130551873 CDS
T09216
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130551873 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130551873 (cnot1)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130551873 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130551873 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130551873
NCBI-ProteinID:
XP_057185846
LinkDB
All DBs
Position
LG3:7327960..7344868
Genome browser
AA seq
2399 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNCHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFVSTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLSLLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKQDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISNPVGGGIWSDGKDKSDGSQVHTWNVEVLIDVVKEVNLNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMSPELF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACITFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCGNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQMFSSAQKEWPVTDPHPTVSAD
LSQVWPEANQHFSNEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVF
NCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGS
KMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKM
QGSITTPGSLALAQAQAQSQTPKVPQPGQASTLVTTATTTTTAAKTTTITRPTAVGLKKD
VPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEE
FMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAAN
FSDRSLLKNLGHWLGIITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLES
SLRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRD
KEKLKNLEEQLSAPKKETKPPDAEMMPIVTTVDPVAFTTVPSTPATTTTCTATGPPTPQF
SYHDINVYALAGLAPHININVTIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAM
TTCEQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAAL
RAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEG
RRYCDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQ
PMKQQAWPTDDVAHIYDKCISDLEQHLHAIPPALAMNPQTLAIRSLLEAVVMARNSRDGI
AALGLLQKAVEGLLDATSGADPDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIE
CRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLNYMAVAFAMQLVKLLLVDERSG
SHITEADLFQTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGI
SQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLIT
RFFRLCTEMCVDISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTV
TKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT
AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP
FLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELR
SNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagttacctagtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacacattgtgaattgtcacggc
cctgaggcagacaggcatctattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacagtttctgatccaggagtgtgtgtcg
cttattaccaaaccaaattttgtttcaaccctctgctacgccattgacaatcccctgcac
tatcaaaagagtttaaagccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggcctttctctgctaaactctagcaacgcagac
cttcgagggtttgctgcccagtttgtgaagcagaagcttcctgacctcctccgttcgtac
gtggacgccgacctcggaggaaatcaggaaggtggcttccaagacattgccatagaggtt
ctgcatctgctcctctcccatcttctgtttggccaaaagggctccagcggcgtcggacaa
gagcagatcgacgcctttctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcgccactgctctaccctgacaaacaggacattctcatggacaggatcttg
ccagactctggagagttaaataagaccatgatggagagttctctcgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagaatgcaggaacataatcctccagtat
ggggtgcgagaggtgacggccagccaggtggccagagtgctgggcatgatggcccgcact
cactctggcctgtccgatggcatccctttacagtccatctcaaatccagtgggtggtggc
atttggagtgatggaaaggacaagagtgatggctctcaggttcacacctggaacgttgaa
gttctgatcgacgtggttaaagaagtgaacctcaatctgaatttcaaagaggtgacctat
gagctagaccacccaggcttcctgatccgggatagtaaggggcttcagatagtggtgtat
gggatccagaggggtctggggatagaggttttcccagtggatctcatttatagaccatgg
aagcatgcagaaggacagctgtcattcattcagcattctttgatgagtcctgaacttttc
tgctttgccgactacccgtgtcacactgtcgccattgacatcctgaaagccccacctgag
gatgacaacagggagatagccacatggaagagcttggacctggtggagagcctcttgcgt
ctctctgaagttgggcattatgaacaggtgaaacagctcttcagcttccccatcaagcac
tgcccggacatgctggtgttggccctgctgcagatcagcacgtcctggcacacgctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactccgctatc
atcttgcactatgcctggcatggacagggtcagtccccatccatccgtcaactgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggctaagctgtctcgc
atcttagatgtggctcaggacttgaagtctttatcgatgctgctgaatggtactccattt
gcctttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaactcgacaaa
tggcttactgacaaaatccgagagcacggggagccgttcatccaggcatgcatcacgttc
ctgaagagacgctgtccttccatcatgggtggtttggccccagagaaagaccagccgaaa
agtgctcagcttcctcctgaaacactggccaccatgctcgcatgtctgcagtcttgtgct
gggagtgtatctcaagagctgtcagagactatattgaccatggtggccaactgtggcaat
gtgatgaacaaagctcgacagccgccaccaggagtcctaccgaaggggcgagcacccagc
accagcagcttagacgctatctcacctgtgcagatggaccctctctctgccatgggctct
ctgagtttaggtgtttcatccacctctcacaccccaagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccacagtccccggctaaggccttctcaaacctgcctaac
ccaaaccccagcacagctttcccaggaattaaccccctttcatctcagctacaaggtcct
ttaagcacaagcttgactgggatcggatcaggcttgggcatgccagccgtcagcagcgac
ccctttggcaccaggaagatgagcacaccggggctgaacccgcccaccttccaacagatg
ttttcatcagctcaaaaagaatggcctgtaacagatccccatcccactgtttcagctgac
ctatctcaggtgtggccagaggcaaatcagcactttagtaatgagatcgacgacgaagca
aacagctacttccaacgcatctacaaccatccaccacatccaactatgtctgtggatgag
gtgctggaaatgctgcagaggttcaaggactcaaacatcaagcgggaacgggaggttttt
aactgcatgctgaggaatctgttcgaggaatacagatttttcccccagtatcccgacaaa
gagctgcacatcaccgcctgcctcttcggggggatcatcgagaagggcctggtcacgtac
atggcgctgggcttggccttacgatatgtcttggaagccttacgcaaaccttttggatca
aagatgtattattttggaattgctgcactagatagatttaaaaatagattgaaggactat
ccccagtactgtcagcacttggcgtctatagcccatttcctgcagtttccacaccattta
caagagtgtgtacagtatatcgagtatggccagcagtcaagagaccctcctgtgaagatg
caaggctccatcaccaccccgggcagcctggcactagcccaagctcaggcccagtctcag
acccccaaagtcccccaacctggccaagccagcaccctggtgaccacagctaccacaacc
accaccgctgccaaaaccaccaccatcacgagacccacagctgtcggactgaagaaagac
gtgccaccctcaatcaacaccacaaacatcgacaccttgttggtagccacagaccagact
gaaaggatcgttgagcccccagagaacgttcaggagaagattgcgttcatcttcaacaac
ttgtcccagtcaaacatgtcccaaaaggtggaggaactgaaagagactgtgaaggaagag
ttcatgccctgggtttctcaatacctggtcatgaagcgcgtcagtattgagcccaacttc
catagtctgtattctaactttctggatacactgaaaaacccggagtttgtcaagatggtt
ctcaatgagacttacagaaacatcaaggtcctccttacctctgataaggcagctgctaac
ttttctgatcgatccctgctgaagaatttgggtcattggcttggaattatcacactggct
aaaaacaaacccattttgtacacggacctggagctgaaatctcttctgttggaagcctat
gtgaaaggtcagcaggagttgctgtatgtcgtcccatttgtagccaaagtcttggaatca
agtctgcggagtgtgatcttcagaccgcaaaatccttggaccatgggtatcatgaatgta
ctagctgaactccaccaggaacatgacttaaagctcaacctgaagtttgagatcgaagtg
ctctgtaagaatctgtctctggacatcagcgagctgaagccaggaaacctgctgagagac
aaagaaaagctcaagaacctggaagagcagctctctgcaccaaagaaagagaccaagcct
cccgatgctgagatgatgcctatagttactacagtagatcctgttgcatttacaacagta
ccctcaactccagcaaccaccactacttgtacagccacagggccgcccactccacagttc
agctaccatgacattaatgtctatgccttggcgggcctggccccacacatcaatatcaat
gtcactatcccactgctgcaggcccaccctcaactgaagcagtgcgtgagaccggctatc
gagcgtgccgtacaggagctggtgcaccccgtggttgaccggtccatcaagatcgccatg
accacctgcgagcagatagtcaggaaggacttcgccctggattccgaggagtctcacatg
cgcgtggccgcccaccacatgatgcgaaaccttaccgccggcatggccatgatcacctgc
agggagccgctgctcatgagcatcgccaccaatctgaagaacagctttgctgcagctctt
agggctcccacgccccagcagagagagatgatggaagaggctgctgctcgtgtcgcgcag
gacaactgtgagctggcgtgttgcttcattcagaagacagcagtggagaaagctggacca
gagatggacaagagactggcaactgagtttgagctgaggaagcatgcccgccaagaaggc
cgtcgttactgtgaccccatggtgctcacctatcaggctgagcgcatgccagagcagatc
agactgaaggtgggtggagtggaccctaaacagctggctgtttatgaggagtttgcgcga
aacgttccaggcttcctacctagtaatgacctgtctcaacctactggattccttgctcaa
ccaatgaagcaacaggcatggccaaccgatgatgtggctcacatctatgacaagtgcatt
tcagacttggagcagcacctccatgcaattccacccgccctcgccatgaacccacagacc
ctggccatacgcagcctgctggaagctgtagttatggcaaggaactcccgtgacggcatt
gctgccctgggccttctacagaaggctgtagagggtttgctggatgccaccagtggtgct
gatcctgatctgttgctaagctacagagagtgccacctgctggtgcttaaagccctacag
gacggacgtgcctacggcccacaatggtgcaacaaacaaatcaccagatgcctgatcgaa
tgcagagatgaatacaaatacaacgtcgaagctgtggagctgctcatcagaaaccatctg
gtcaacatgcagcagtatgatgtacatctggctcagtcaatggagaacgggctcaactac
atggccgtagcatttgccatgcagctggtgaaactcctgctggtcgatgagcgcagcggg
agccacatcactgaagctgacctcttccaaaccattgagacgttgatgaggaccagcgcc
cattccagagcaaatgcacctgaaggtttgccccagttgatggatgtggttcgctccaac
tatgaggctatgatcgatcgccaccatggtgggcccaacttcatgatgcactctgggatt
tctcaagcatctgaatatgatgacccaccaggcctcagagagaaggcagagtacctgctg
agagaatgggtcaacttgtaccactcggcggctgccggcagggacagcactaaggctttt
tctgcattcgtaggccagatgcaccagcaaggcatcctgaaaaccgatgacctcatcact
cgctttttccggctctgcacagagatgtgcgttgatatcagttatcgagcacaagccgaa
cagcagcaccccaccaccagccccgccatcatcagggccaagtgctaccacaacctggac
gccttcgtccggctcatcgccctgctggtcaaacactccggagaggccaccaacactgtc
accaaaatcaacctgctcaacaaggttctgggcattgtagtgggcgtgttgatccaggat
catgatgtgaggcagacggagttccagcagctcccgtaccacagaattttcatcatgctt
ctgttggagctcaatgcaccagagcacgtgctggagaccatcaacttccagaccctcact
gccttctgtaacacatttcacatcctgaggccgactaaagcacctggatttgtatatgct
tggttggagcttatttctcatcgcatcttcattgccaggatgcttgcacacaccccacaa
cagaagggttggcctatgtatgcacagctgctgattgacttgttcaagtatcttgcaccc
ttcctaaggaatgttgagctcaacaaacctatgcaaattctttacaagggaacgctccgt
gtgctgctcgtcttgctccatgacttcccagaatttctgtgcgactaccattatggcttc
tgtgacgtcatcccgccaaactgcatccagctgaggaaccttatcctgagtgccttcccc
cgtaacatgaggcttccagaccccttcaccccaaatctgaaggtggatatgctaagtgag
atcaacatcgctcctcgcattctcactaacttcaccggtgtgatgccatcgcagttcaaa
aaggatcttgactcttacctaaagacccgctcaccggtgactttcctctctgagctgcgc
agcaacctgcaggtgtccaacgagccaggcaaccgctacaacatccagctgatcaacgct
ctggtgctgtacgtgggtacccaggccatcgcacacattcacaacaagggcagcactccc
tccatgagcaccattactcattcagcacacatggacatcttccagaacctcgcggtagac
ctggatactgagggccgctacctgttcctgaatgcgatagccaatcagctgcgttaccca
aacagccacacacactactttagctgtaccatgctgtatctgttcgccgaggccaatgct
gaagccattcaagagcagatcaccagggtcctgctagagaggctgatcgtgaacaggccg
cacccttggggtctgctcattaccttcattgagctaatcaagaaccctgcctttaagttc
tggagtcacgactttgtgcactgtgcccctgaaatcgagaaattgttccagtcggtggct
cagtgctgcatggggcaaaaacaggcccagcaggtgatggagggaacaggtgccagctag
DBGET
integrated database retrieval system
