Triplophysa rosa: 130552239
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Entry
130552239 CDS
T09216
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
tros
Triplophysa rosa
Pathway
tros04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
130552239
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tros04040
]
130552239
Ion channels [BR:
tros04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
130552239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Baculo_PEP_C
IFT57
Snapin_Pallidin
DUF489
COG3_N
Laminin_II
Ion_trans_2
EzrA
Motif
Other DBs
NCBI-GeneID:
130552239
NCBI-ProteinID:
XP_057186436
LinkDB
All DBs
Position
LG3:complement(7428510..7444866)
Genome browser
AA seq
1521 aa
AA seq
DB search
MFNWVVKVVPHPPDGQDGLEEDLASVVNLLESRQHKHNGKPSKRDKLKSSKSIREEDQTS
QTSQGSVHNGMINWLSNGFASALPQPAGSPLLSRANSDAKSMHEEGSADRTGVIGWISHG
IGKVVPQPDEKYRHGETPDCEEATEVYDVKDLPDSEPLPHIPVVEMVSEDEVSEVEAPAQ
FPPKMMTWIKSGFQNALPQHVVRPPNNSNASSPRSSQCSNKVYSPPPESIASVTEVDLKA
ASMVTRIVQGLGLSMPQPVLKNKEDREIVQNDEAQPKETTAKAAENLLPCPSAGLQPQTP
KSPEQSLPLSVTTPPQAHTEQEDAETQTARWTPMIESIKREAEDTAILIMEERLMQERLD
MARMAEEVARKTAEMAVRELAQDRLGIQTIVEEPDDVDQECQAPSPKEFLPEEQEAEEQP
ETPVEDFKSSSPLQEEPELESEPEVDIKPEAESTPGSKSSISEKLCEEEESEEDPDPITH
QPQSVSSRSVSGTDTPVESTAPEVESSVPSRCDALKSCLMHVPCAPQALDRFSRFQKENN
ITLPRVPRMPNLPPSLSQITQQLPSFPFQVSQLPRQISQQISQIPQQFQNLSSNASQHFP
SFTLQLPSLPQQLSNIPQQLSNIPQNLSNLQQRLSVLPQQVSNTPQHLSTIPQKLSSIPQ
RISSIRTRFNQLKPEQDAQQQLQQNRELELDHLVRQSPLHSPRTPSPSSPSSVLDHPNVP
SYPRLPPITPSRQLSGVSNPALHIEDDPTSARPSVSSRLSVHPAVNVEDVDSDRGKGGRR
SRPIPPIIKPQDPNLKTLTVPGARKANRTRDRKPQTIWTKIKRLYSQDDEEEEEIETAVR
AWPSQSSISSADDGLNQRPASSASQASTVVNERLQELVKLFKERTERVKEKLIDPDNSDD
GTPPASPAKQAPAPPPEPPAEQKTEQEVPEATVEKEEEKTKVLCCKLKPQSRLGRLLRYR
FPASIDPFTNLIYVLWLFCVSLAFNWNAWMIPVRWAFPYQTPDNIHVWLLIDYLCDTIYI
LDILAFQPRLQFVQHGDIVSSKKEMRDNYIKALRFKLDLISLLPLELLYFKTGINPLLRL
PRLMKFMSFFEFNKRLEAILTNAYIYRVIRTTTYLLYAVHCNACLYYWASAFEGLGVSQW
VYDGNGNSYIRCYYFAVKTLLTIGGLPEPTTLFEIVFQLINYFIGVFVFSIMIGQMRDVV
GAATAAQTSYRACVDNTVKYMASYRIPKNVQNRVKTWYSYTWQSQGMLDEQELLDQLPDK
MRLDIAVDVSYNIISKVPLFQGCDRQMIFDMLKRLKSVVYLPGDYVCKKDEVGREMYIIK
AGEVQVVGGPDGKTVFVTLKAGAVFGEISLMAMGGGNRRTANVIARGFANLLILTKKDLN
EIMVHYPESQKLLRRKARKMVTKDKKPAEKKEEEKEPVPIIPPRAETPKLLKAALEMSEK
SGKKGTWTKLKERSNRSSVSLQRSISSTATPNSPAHEPNSEQEPDALSQISDSSMQIPTT
PTGSGDGNVFAEDGPKEEEAK
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaggtagtgccacatcctcctgatggacaggacggtctggaa
gaggacttggccagtgtggtaaatctcttagaatcccgtcaacacaaacataatgggaaa
ccatcaaagcgagataaattaaaatcatctaagtcaataagagaagaagatcaaacatct
caaacttcacagggcagtgttcataatggtatgattaactggctctccaatggtttcgca
agtgcactgcctcaacccgcaggaagtcctcttctctccagagccaactctgatgctaaa
tcaatgcatgaagaaggttctgcagacaggactggagttattggttggatctcacatgga
attggaaaggtggtccctcagcctgatgagaaatacagacacggagagactccagattgt
gaagaagccacagaggtctatgatgtcaaagatctcccagattctgagcctttgccacat
ataccagtagtagagatggtgtcagaggatgaagtatctgaggtggaagcacctgcccag
ttccctccaaaaatgatgacctggataaagagtggctttcagaacgctctgcctcaacat
gtggtcagacccccaaataactccaacgcgtcctcgccgagatcatcacagtgctccaac
aaagtttattcaccgcctccagaatcgattgccagcgtgacagaggttgatttaaaagct
gccagtatggtcactcgaattgttcaaggtttgggcctttcgatgccacagccagtacta
aaaaacaaggaggacagagagattgtgcaaaacgatgaagctcaaccgaaggaaacaaca
gcaaaagcagcagagaacttacttccatgtccatcagctgggctccaaccacaaacacct
aaatcaccagaacaatctcttccactgagtgtcaccacacccccacaagcccacacagag
caagaggacgcagagacccaaacagcacgatggacacccatgatcgagagcatcaagaga
gaggcagaggatactgccatattaatcatggaggaacggttgatgcaggagcgtctggac
atggctcgcatggcagaagaagtcgcgaggaagacagcagagatggcggtcagagagctg
gcacaggacaggcttggcattcagaccattgtggaagaaccagatgatgttgatcaagag
tgtcaagcaccttcacctaaagagtttcttccagaagaacaggaggcggaggaacaacct
gaaacccctgtggaagacttcaagtcctcttcacctttacaggaggaaccagagcttgaa
tctgagcctgaggtggatatcaaacccgaggctgaatccacacctggatctaagagctct
atatctgaaaagctttgtgaagaagaagagtctgaggaagatcctgacccgatcactcac
cagcctcagtccgtttccagtcgctccgtttctggaaccgatacaccggtggagagtact
gctcctgaagtggaaagtagtgtcccatccagatgtgatgcgctgaagagctgtctcatg
cacgtgccctgtgctccacaggccctcgaccgcttcagccggttccaaaaagagaacaac
atcaccctgccccgagtgcctcggatgcccaacttgcccccttctctgtctcagatcacc
caacagctgccatcctttccctttcaagtgtctcagttaccccgacaaatctcccagcaa
atttcccaaatcccccagcaattccaaaacctgtcttccaacgcatcccagcactttccc
agcttcaccctgcagcttcccagcctcccacaacagctgtccaacattccacagcaatta
tccaacatcccacaaaacctgtccaaccttcaacaacggctttctgtactcccacaacag
gtatccaacacaccgcaacacctctccaccattccacaaaaactatccagcattccacaa
aggatttccagcattcggacgcgttttaaccaacttaagccagagcaggatgcccagcag
caactgcagcagaatagagaactggagttggaccatctcgtccgccagtctcctctccac
tccccccggaccccctctccttcctccccaagctccgtcctagaccaccccaatgtgccc
tcgtacccccgtctgccacccattaccccttccaggcagttgtctggtgtctccaaccct
gccttacacattgaagatgatcccacctctgctagaccctcagtgagctccagactgagc
gtgcacccggccgtgaatgtagaagatgttgattctgacagaggtaaaggtggaaggaga
tctcgtcccataccaccaatcataaaaccacaagatcccaacctgaaaaccctaactgta
cctggtgctcgcaaagccaaccgcaccagagacagaaaaccacaaacaatttggaccaag
atcaagagactttactctcaagatgatgaggaagaagaggaaatagaaaccgcagtcagg
gcctggccaagccagagcagcatctccagcgccgatgatgggcttaatcaacggcccgcc
tcttcagccagccaggccagtactgtagtgaacgagaggttgcaggagctggtgaagctg
tttaaagaaagaacagagcgtgtcaaggagaaactaattgatccagataactcagatgat
gggacaccacctgcctctccagctaaacaagctccagcgccccctcctgagcctccagca
gagcagaaaacagagcaggaggtgcccgaagccactgttgagaaagaagaggaaaaaacg
aaggtcctatgctgtaagctcaaacctcagtccaggcttggtcgacttctgcgctaccgc
ttcccagctagcatcgaccccttcactaatttgatctatgtgctttggctgttttgcgtg
tctttggcgtttaactggaacgcgtggatgattcccgtgcgttgggcgttcccttatcaa
acacctgataatatccatgtatggctgttgatcgactacctatgtgataccatctacatt
ctggacatcttggcctttcaaccccgactgcagttcgtgcaacatggggacattgtgagc
agcaagaaggaaatgagagataattacatcaaagctttacgattcaagctggacctgatc
agtctccttccactggagcttctctacttcaaaacaggaattaatcctctcctccgctta
ccaaggctaatgaagtttatgtctttctttgagttcaacaaacgtctggaagctatcttg
accaatgcatacatttacagagttattcgaaccaccacgtatctgctgtatgctgtccac
tgtaatgcttgtctttattactgggcctcagcttttgaaggtctgggtgtttcccaatgg
gtctatgatggaaacggtaacagttatatccgctgttactactttgccgttaagactttg
ctcaccattggaggcctgccggaacccacaacactttttgagattgtgtttcagctcatc
aattacttcatcggagtctttgtgttctccattatgattggtcagatgagagatgttgtg
ggtgccgccacagccgctcagacaagctatcgtgcttgcgtggataacacggtgaaatac
atggcgtcctaccgcattcctaagaatgtgcagaacagagtaaaaacctggtacagctac
acatggcagtcccaaggcatgctggatgaacaagagttgctagatcagttacctgataag
atgagactggacattgctgtggacgtgagctataacattatcagtaaagtgccactcttt
cagggttgtgacagacagatgatctttgacatgctgaagagactcaaatctgtggtgtac
cttccaggagactacgtctgcaaaaaggatgaagtgggccgtgagatgtacatcattaag
gctggggaagtccaggtagtcggtggtccggatggaaagacggtgtttgtgaccctgaaa
gcaggagcggtgttcggagagatcagcttgatggcgatgggaggagggaacagacgtacg
gctaatgtcatagcacgtggttttgctaacctcctcatcttgaccaaaaaggacttgaat
gagatcatggtgcactatccggagtcccagaaacttctccgcaggaaagcaaggaaaatg
gtgacaaaagataaaaagccagctgagaagaaagaagaagagaaggagcccgtcccgatt
attcctcctcgtgccgagacacccaaactgttgaaggcagcattggagatgtctgagaaa
tcaggcaagaaaggaacatggaccaagttgaaagaaagaagcaatagatcaagtgtctcc
ttacagcgttccatctcttcaacagcgacgcccaactcgcccgcccatgaaccgaactca
gagcaggaaccagacgccctgtctcagatatcagacagctcaatgcaaatccctacgacc
cccaccggctctggagatgggaatgtatttgctgaagatggtccaaaggaggaggaagca
aaatag
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integrated database retrieval system
