Triplophysa rosa: 130559202
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Entry
130559202 CDS
T09216
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
tros
Triplophysa rosa
Pathway
tros04510
Focal adhesion
tros04512
ECM-receptor interaction
tros04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130559202 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130559202 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130559202 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tros00535
]
130559202 (col9a1b)
Proteoglycans [BR:
tros00535
]
Extracellular matrix (ECM) proteoglycans
Others
130559202 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130559202
NCBI-ProteinID:
XP_057198128
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Position
LG9:complement(22252492..22268324)
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AA seq
682 aa
AA seq
DB search
MMAHAVGLRGPLLLLLLEITIICTAQRVGGGPPGPPGVPGIDGIAGERGEPGEDGSTGPD
GDDGKPGSAGLPGLPGGDGLTGPVGEPGLDGPLGQKGEPGKSGPRGQAGVGPDGSIGPPG
PGGLPGEQGKVGPPGAMGVRGPEGPRGPTGSRGAAGMLGGTMELCPNACSAGAPGHPGLP
GMKGHKGVKAEAGEPGKQGHKGEEGDQGAPGDVGAQGPTGPQGTRGATGMIGSKGEMGPR
GVDGEPGPQGVAGAMGDRGQRGRLGEAGPKGEQGAQGPRGTTGLPGPKGDGGLPGVDGRE
GIPGIPGAKGNAGKGGAPGEIGLQGLPGLPGSPGPKGTSGEKGNAGELGLMGTMGSAGRQ
GERGEQGEVGPVGPIGQPGDRGEQGPSGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGER
GEGGEVGPKGEQGDQGAEGTPGDKGDVGDPGQAGTKGEVGNQGDLGKRGSDGPRGQPGIE
GPLGSPGPRGMQGDRGVPGPRGSQGGAGKEPSDQHIKQMCMRVMQEQLAQLAASLRRPES
GAAGLPGRPGSPGPPGPPGDNGFPGQAGARGLPGLKGPLGVLGFKGQKGEMGDRGDRGPT
VRGPKGMHGPPGLPGEPGKPGYGRDGRDGERGPPGVPGQPGVPGFPGPAGQAGYCDPSSC
NLSAGAAHQSLKDSNLKGPGGN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgatggctcacgctgtgggtttgcgcgggcctcttttgctgcttttgttggagataacc
atcatctgcacggcacagagggtcggaggcggccctccaggtccaccaggtgtgcctgga
atagatggcattgctggggagagaggtgaacctggcgaagatggctctactggccctgat
ggagatgatggaaaaccgggttctgctggacttcctggtttacctggtggtgatggattg
actggccccgtaggagagcccggcctcgacggcccactaggacaaaagggagaacctggg
aaatctggacccagaggacaagctggagttggacctgatggatctattggaccaccagga
ccaggggggcttccgggtgagcagggaaaagtgggaccccctggggccatgggtgtaaga
gggccagagggaccccgtggaccaacagggtcccgtggtgctgcagggatgttgggtgga
actatggaactgtgtcctaatgcatgctcagctggtgcaccgggccatcccggcttgcct
ggcatgaaggggcacaaaggagtgaaggcagaagcaggagagcctggtaaacaaggacac
aagggagaggagggagatcaaggggctcctggagatgttggagctcagggtccaactgga
ccccaggggactcgaggtgccactggaatgattggctctaaaggagaaatggggcctcgg
ggtgttgatggtgagccgggtcctcagggtgtggcaggtgccatgggggatcgaggtcag
aggggaagactgggggaagccggccctaaaggtgaacagggcgctcaagggccaagaggc
accacgggtcttccaggaccaaaaggagacggcggtttgccgggtgtagatgggcgtgag
ggtattcctggcataccaggagcaaagggcaatgctggaaaaggaggagctccaggagaa
ataggccttcaaggacttcctggtttaccaggaagcccagggccaaaaggtacatctgga
gaaaagggtaatgctggagagctaggcctcatgggcactatgggatctgcaggcagacag
ggcgagcgcggagaacaaggagaggttggacctgtcgggcctattggtcagcctggagac
cgtggagagcagggcccatctggaccaatgggaaaaccaggagccagaggtcctaaaggt
gatttgggtttgcctggacttcccggaccgccaggcttgccaggaataaaaggggagcgg
ggtgaaggaggtgaagttggacctaagggagaacagggagatcaaggagcggagggaaca
ccaggagataaaggagatgttggtgaccctggccaagctggaactaaaggcgaagtcggt
aaccagggagatttgggtaaaagaggctcagatggaccccgcgggcagcctggcatcgaa
ggacctcttggtagccccggaccacgtggcatgcaaggggacagaggggtcccgggacct
cgtggctcccagggtggagcgggtaaagaaccaagcgatcagcacatcaaacagatgtgc
atgcgggtgatgcaggaacagctggcccagttggccgcaagtctgagaagaccagagtct
ggtgcggctggactgccaggccggcctggttccccaggtcctcccggacctccaggtgac
aacggatttcctggacaagctggtgcgagaggactgcctggactcaaagggcctctggga
gtcctgggttttaaggggcagaaaggtgagatgggagacagaggggacaggggacccaca
gttcggggacccaaaggcatgcatgggcctcctggtctaccaggtgaacctggaaaacca
ggatacggtcgggatggtcgtgatggggagcgagggccacccggtgtgccaggacagccg
ggtgttcctgggtttcccggtccagccggccaagccggttactgtgacccttcatcttgt
aatctgagcgcaggggctgcccaccagtccctcaaagactctaatctaaagggcccagga
ggaaactaa
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