Takifugu rubripes (torafugu): 101063095
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Entry
101063095 CDS
T02386
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101063095 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101063095 (cnot1)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101063095 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101063095 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101063095
NCBI-ProteinID:
XP_029687919
LinkDB
All DBs
Position
Unknown
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVLLISKPNFISSLCYAIDNPLHYQKSLKPSAHFFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRAFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELARTMMESSLAEFMQEVGYVFCASLDECRSIIHKYGMREVTACQVARVLGMMART
HSGLSDGIPLQSISSPGSGIWSDGKDKNDGSQPHTWNVEVFIDIVKEVNPSLNFKEVTYE
LDHPGFLIRDSKGLHIVVYAVQRGLGMEVFPVDLIYRPWKNAEGQLSFVQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLPPDKDQPKSSQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLAGMGSL
NLGGTAASHNPGFPTSLSSAFSNPQSPAKAFPALSNPNPSTPFGGIGSLSTQLSGPLSSG
IGSSLGMQTVNTDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSKEIDDEAN
SYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKE
LHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYP
QYCQHLASIAHFLQFPHHLQELLKSVQYIEYGQQSRDPPVKMQGSITTPGSLALAHVQAQ
TQQPGGPKAPPPSQPSTLVTTTTTTTTTVKTPTITRPTPSNFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPDNVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLEEQLSAPK
KESKAPEETLAVPTAGEFVPFAAPPSTPAATTASCAATGPPTPQFSYHDINVYALAGLAP
HININTSVSLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDS
EESRMRLAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRTPTPQQREMMEEAA
ARISQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
MPEQIRLKVGGVDAKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQI
YDKCIADLEQHLHAITPTLAMNPLTQALRSLLEAVVLARNSRDGIAALGLLQKAVEGLLD
ATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELL
IRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETL
MRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREK
AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtcaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggattttagtggagat
ggtaaaagcagtggaaaggattttcaccagacacagtttctgatccaggagtgcgtgttg
ctgatatccaagccaaattttatctcttctctgtgttacgccattgacaatccccttcac
taccagaagagtttgaagccatcagcccacttttttactcagttgagtaaagttcttaaa
ctcagcaaggtccaagaggtgatatttgggcttgctttgctcaactccagcaacacagac
cttcgtgcttttgctgcacagttcatcaagcagaagcttccagacctcctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggcttccaagacatcgccatagaggtg
ctgcacctgctgctctcccatctactgtttggtcagaagggagccagtggggtgggacag
gaacagatcgacgccttcctcaagaccctttgtcgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatcctg
ccagactcgggagagttagcgaggaccatgatggagagttctcttgctgagttcatgcaa
gaggttggctacgtcttctgtgctagtctggatgagtgcagaagcataatccacaagtat
gggatgagagaggtgacggcctgccaggtagccagggtgctgggcatgatggcacggacc
cactcgggcctctccgatggcatccccctacagagcatctccagcccaggaagtggcatc
tggagcgacggcaaggacaagaacgacggctcgcagccacacacgtggaacgtggaggtt
ttcatcgacattgtgaaggaagtgaatccgagcctgaacttcaaggaggtgacgtacgaa
ctggatcatccgggcttcctgatccgggacagcaagggcttgcacatcgtggtctatgct
gttcagagggggctgggcatggaggtcttccctgttgacctgatctatcgaccctggaag
aatgccgagggacagctgtcgtttgttcaacactccttgatgagcccggaggtgttttgc
ttcgccgactacccctgccacactgtggccattgacatcctgaaggcccccccagaggat
gacaacagggagatcgccacctggaagagtctggacctggtggagagtctgctcaggctc
tccgaggtgggccagtacgagcaggtgaagcagctctttgggtttcccatcaaacactgt
ccggacatgttggtgctggcgttgctgcagatctccacgtcctggcacacgctgcgccat
gagctcatctccaccctgatgcccatcttccttggcaaccatcccaactctgccatcatt
ctgcactacgcctggcatggacagggccagtctccctccatccgccagcttattatgcat
tccatggcagagtggtacatgagaggggagcagtacgaccaggccaagctgtctcgcatc
ctcgacgtggcccaggacctgaagtctctctccatgttgctgaatgggaccccgtttgcc
tttgtcatcgacctggctgcactcgcatctcgtcgtgaatacctcaaacttgataaatgg
ctaactgacaagataagagaacacggcgaaccgttcatccaggcgtgcgtgaccttcctg
aagcgccgctgtccctctataatggggggtcttcccccagacaaggaccagcccaagagt
tcccagctgcctccagagaccttggccaccatgctggcctgcctgcagtcctgtgctggg
agcgtttcccaagagctgtcggagaccattctcaccatggtggccaactgcagcaatgtg
atgaataaagcccgacagccgccaccaggggtcatgcctaaaggacgtgcccccagcacc
agcagcttggatgcaatatctcccgtacagatggaccctctggctggtatgggatccctg
aacctgggaggcacggcagcgtcacacaatcctgggttccccacctccctgagctctgcc
tttagtaacccccagtctccagcaaaggctttcccagctctgtccaaccccaatcccagt
acaccttttggaggaattggcagcctgtctactcagctctctggtcctctgagctcaggt
attggatcgagtctgggcatgcagactgtcaacacggacccttttggcaccaggaagatg
agcacaccaggcctgaacccaccgacctttcagcagagtaagatgaaggcctctgacctc
tctcaggtttggcccgaagcaaaccagcactttagtaaggagatagatgatgaagccaac
agctacttccagcggatttacaaccacccacctcacccaactatgtctgtagatgaagtg
ctggagatgctgcagagatttaaggattcaaccatcaaacgggagagagaagtctttaac
tgcatgctgcggaatttgtttgaggagtacaggtttttcccccagtaccccgacaaggag
ctgcacatcactgcctgcttattcggtggcatcattgagaagggcctcgtgacctacatg
gccctgggcctggccctccgatatgtcctggaggctttgaggaaaccatacggctccaaa
atgtattactttggaattgctgctctggatcgctttaagaacaggctgaaggactaccct
cagtactgccagcacctggcttctatcgcacacttcctgcaattcccccaccatttacag
gagctgcttaaatctgtccagtatattgaatatgggcaacaatcccgggacccaccagta
aagatgcaaggctccatcaccactcctggcagtctggcactggctcacgtgcaggcccag
acacagcagcccggaggccccaaagctccgccgccgagtcagcccagcacgttggttacc
accaccaccaccaccaccaccacagtcaagacgcccaccatcacgaggcccacgcccagc
aacttcaagaaggacgttcctccctcgataaacacaaccaacattgacaccttgttggtg
gccactgaccagaccgagaggattgtagagccaccagacaacgtccaggagaagattgcc
ttcatctttaacaacctttctcagtccaacatgacacagaaggtggaggagttgaaagag
acggtgaaagatgaattcatgccctgggtgtcccagtacctggtgatgaaacgtgtcagc
attgagcccaacttccacagtctctattccaactttttggatactttaaagaacccagag
tttgtcaaaatggtcctaaatgagacgtacaggaatatcaaggttctgctgacatcagac
aaggcagcagccaatttctctgaccgctctctgctgaagaacctcggccactggttgggc
atgattacactggccaaaaacaagcccatcctttacactgatctggaagtgaagtctctg
ctgctggaagcatatgtgaaaggacaacaggagctgctgtacgtagttccctttgtggcc
aaagttttggagtccagtttgagaagcatggtcttcagacctcagaacccctggaccatg
gccatcatgaatgttcttgctgagctccatcaggagcatgacctgaagctgaacttgaag
tttgagattgaagtcctgtgtaagaatctgtctctggacatcaacgagctgaaacctgga
aacctgctgaaggacaaagacaagctgaagaacctggaggagcagctttctgcaccaaag
aaagagagcaaggctccagaggagacgttggccgttcccacagcaggagaatttgttcca
tttgcagctcctccatcaacaccagctgccaccacagcgtcctgtgcagccacggggccc
ccgaccccccagttcagctaccacgacattaacgtgtatgccttggccggcctggctcca
cacatcaacatcaacaccagtgtctctctgctgcaggcgcatcctcagctgaagcagtgc
gtgcggcagtcggtggagcgagccgtccaggagctggtgcaccccgtggtcgatcgctcc
atcaaaatcgccatgaccacctgtgagcagatcattaggaaggactttgcactggactcg
gaagagtcgcgcatgcgtctggcggcccaccacatgatgagaaacctgacggctggcatg
gccatgatcacgtgccgggagcctctgctcatgagcatcgccaccaacctgaagaacagc
tttgcagctgccctcaggacgccgacccctcaacagagggagatgatggaagaggctgcg
gccaggatttctcaggacaactgtgaattggcctgctgctttatccagaaaacggccgtg
gagaaagccgggcctgagatggacaagagactagcaacagagtttgagctgcggaaacac
gcgcggcaggaaggccgccgctactgtgaccctgttgtgctgacctaccaggcagaacgt
atgcccgagcagatcaggctcaaggtgggaggggtggatgccaagcagctggctgtgtat
gaggaatttgccaggaatattccagggttccttcccagcaatgatctttcacagcccacc
ggctttttggctcagcccatgaagcagcaggcatgggccacagacgacgtggctcagatc
tacgataagtgcattgcagatttggagcagcaccttcacgccattactccaaccctggcc
atgaacccactaacccaggccctgcgcagcctgctggaagctgtggtcttggctagaaac
tcaagggatggaattgctgcgctcggcctcctgcagaaggctgtagaaggtcttctggat
gctacaagtggggctgatgcagacctgctgctccgctacagggaatgtcacctgctggtc
ctgaaagccctgcaggacggacgcgcctatggaccacagtggtgcaataagcaaatcacc
aggtgtctgatagaatgtcgtgatgagtacaaatacaacgtggaggcagtggagctgttg
atccggaaccatctggtgaatatgcagcagtacgacctccatctggcacagtccatggag
aacgggctgcactacatggccgtggccttcgccatgcagctggtgaagctgctgctggtg
gatgagcgcagcgtcagccacgtgaccgaggccgacctcttccacaccatcgagaccctc
atgaggacctgcgcccactccagggccaacgcacctgagggccttccccagctgatggac
gtcgtccgctccaactacgaggccatgatcgaccgggcccacggtgggcccaacttcatg
atgcattcaggcatctctcaggcttcggagtacgacgacccgccgggcctgagggagaag
gcggagtacctgctcagagagtgggtcaacctgtaccactcggcagctgctggcagagac
agcaccaaggccttctctgcttttgttggccagatgcaccagcagggaatcctgaagacg
gacgacctgatcaccaggttcttccggctttgcacagagatgtgcgtggagatcagctat
cgtgcccaggcggagcagcagcacaacccggcggccagcgccgccatcatcagagccaag
tgctaccacaacctggacgccttcgtgaggctgatcgccctgctggtcaaacactccgga
gaggccaccaacacggtgaccaagatcaacctcctcaacaaggtgctcggtatcgtcgtc
ggggtgctgatccaggaccacgatgtccggcagacagagttccagcagctgccctaccat
cggatattcatcatgttgcttctggagctcaacgcccccgagcacgtcctggagaccatc
aacttccagacattaaccgccttttgcaacaccttccacatcttgaggcccaccaaggcg
cctggcttcgtgtacgcctggctggagctcatctctcaccgcatctttatcgccaggatg
ctagcgcacacgcctcagcagaagggctggcccatgtacgcacagctgctcatcgacctc
ttcaagtatctggcgccgttcctgaggaacgtggagctcaacaaacctatgcaaatcctg
tataaggggacgctccgagtgctgctggtcctgctccatgatttcccggagttcctgtgt
gactaccactacggcttctgtgacgtgattccgccaaactgcatccagctccgcaacctc
atcctgagtgccttcccacgtaacatgaggctgcccgaccccttcacccccaacctgaag
gtggacatgctgagtgagatcaacatcgctccacggatcctcaccaacttcacgggcgtc
atgccctcccagttcaagaaggatctggactcctacctgaagacgcgctcacctgtgacc
ttcctgtctgagctgcggagcaacctgcaggtgtccaacgaaccaggaaaccgctacaac
atccagctgatcaacgcgctggtgctgtacgtgggcacccaggccatcgcccacatccac
aacaaggggagcacgccgtccatgagcaccatcacccactcggctcacatggacatcttc
cagaacctggctgtggacctggacacggagggacgctacctcttcctcaacgccatcgcc
aaccagctgcgctaccccaacagccacacccactacttcagctgcaccatgctctacctg
ttcgccgaggccaacaccgaggccatccaggagcagatcaccagggttctgctggagagg
ctgatcgtgaaccggccgcacccctggggtctcctcatcaccttcatagagctgatcaag
aaccccgccttcaagttctggagccacgactttgttcactgtgccccggagatcgagaag
ctgttccagtcggtagcccagtgctgcatgggccagaagcaggcccagcaggtgatggag
ggcaccggagccagctag
DBGET
integrated database retrieval system
