Takifugu rubripes (torafugu): 101077226
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Entry
101077226 CDS
T02386
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101077226
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101077226
09142 Cell motility
04820 Cytoskeleton in muscle cells
101077226
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tru00535
]
101077226
Proteoglycans [BR:
tru00535
]
Extracellular matrix (ECM) proteoglycans
Others
101077226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101077226
NCBI-ProteinID:
XP_003978074
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Position
17:complement(9287492..9296385)
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AA seq
687 aa
AA seq
DB search
MILSWMCREYLLVILLQIVLICSAQRGPVGPRGPPGPLGTAGVPGVDGIDGDRGEDSTVN
GGRGPDGESGRDGAPGAPGIPGADGPVGPPGEPGITGLKGSKGESGLRGPSGEPGVGTDG
LDGIPGTDGLPGELGKVGPPGARGKRGPVGLPGAVGLRGPPGVYQGEELCPNACSSGRTG
HPGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGPLGVVGAQGLPGPGGVRGFPGIMGSKG
DRGPRGTPGDIGPRGIQGVPGDMGQRGPTGEPGIPGAQGDRGPPGIRGAPGAKGDPGLPG
PDGREGIPGLPGSKGLPGKSGAPGDAGSQGLPGLPGAYGQKGISGVKGVAGDPGVVGLDG
SPGKQGERGEQGEVGPVGPRGGPGTRGPRGHDGPPGAPGARGSKGDPGLPGLPGPAGYHG
QKGDRGAVGLDGPKGDQGPAGAEGTAGERGDVGDEGELGEKGSTGPPGETGNKGPEGSRG
QQGKEGKLGQPGPRGMQGDMGAPGLSGRQGPPGKTPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGLPGPPGPPGPPGPSGENGFPGHVGSRGLPGLKGPPGVLGRKGPKGDQGDKG
DRGPTERGPKGEPGAPGLPGQPGRVAYGKDGRDGERGPRGVDGTVGVPGPPGPPGLNAYC
ESAQCVLPMVASPVSAKDSSMKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgattctctcctggatgtgccgagagtatttgctggtgattttactccaaatcgtgctg
atttgctcggctcagagaggcccagtcggtcctagaggccccccaggcccactggggact
gctggtgtgccgggggtggacggcattgatggcgacagaggagaagattccactgtaaat
ggaggacgaggtcctgatggtgagagcggcagagatggagctccgggagccccgggaatt
ccaggggcggacggcccagttggaccccctggggagcctggaataactggcctcaaagga
tccaaaggagagtctgggctgcggggaccttctggagagcctggtgttggaactgatggc
ctggatggaattcctggtacagacggccttccgggtgaactgggaaaagtcggccccccg
ggggccagaggaaagaggggcccagtgggtcttcctggtgctgttgggctgcggggtcct
cctggtgtgtatcaaggcgaggaactgtgtccaaatgcttgttcctctggacggactgga
catcctggtctccctggcatgaagggtcacaaaggggttaaaggtgaatcaggtgaacca
ggaagacaaggacacaagggagaggagggtgaacaagggccactgggtgtagtcggagct
caaggattaccaggtccaggtggagtgagaggcttcccaggaatcatgggctccaaagga
gacaggggaccccgaggaacacctggtgatatcggacctcgtggcatccagggggtccca
ggtgacatgggtcagaggggacctacaggtgagccggggataccaggagcccagggagat
cgaggccctcctgggatcagaggagcaccaggagctaaaggagaccctggcctccctggt
ccagacggtcgtgagggaattcctgggctgcctggctccaagggtcttcctggtaaaagt
ggggctccaggtgatgctggttcacagggacttcctggtctgccaggggcttatggacag
aagggcatcagcggtgtaaagggagtggcaggggatccaggtgtcgttgggctagatgga
tctccaggcaaacagggtgaacgtggtgaacagggagaggtgggaccagtgggacccaga
ggaggaccagggacccgtggaccaagagggcacgatgggcctccaggggcaccgggagcc
cggggaagcaaaggcgatccgggccttcctggactgcctggtcctgctgggtaccatggg
cagaaaggcgacaggggtgctgttggccttgatggtccaaagggagaccagggacctgcg
ggtgcagaaggaacagcaggagagcgaggcgacgtgggtgatgaaggagagctgggcgag
aagggatcgacaggcccaccaggggagacagggaataaagggccagagggcagtcgaggg
cagcaaggcaaagagggcaagttgggccaaccaggcccacggggcatgcagggggacatg
ggtgccccgggcctgtcagggcggcagggaccaccgggaaaaacaccaactgatacacac
atcaaacaggtctgcatgagggtaatgcaagagcagctggcccagctagcagccagcctc
agcaggcctgaatcaggtatcgctggcctgcccggccccccgggcccacctggccctcca
ggaccctctggagagaatggtttccctggccatgttggatcacgaggacttcctggtctg
aagggtccacctggggtactgggtcgcaaaggacccaaaggcgatcagggtgataaaggg
gaccgaggacctacagagagaggacctaaaggagagcctggagccccgggtctaccaggt
caacccggtcgagttgcttacggcaaagacggacgtgatggagagcggggaccccgtgga
gttgacggtacggtcggcgttcctgggccccctggcccccccggcctgaacgcttactgt
gagtcagcacagtgcgttctgccaatggtggcgtcgccggtgtcagccaaagactccagc
atgaagggccccagtgagatgtga
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