Takifugu rubripes (torafugu): 101077688
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Entry
101077688 CDS
T02386
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101077688 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tru03041
]
101077688 (sf3b1)
03036 Chromosome and associated proteins [BR:
tru03036
]
101077688 (sf3b1)
Spliceosome [BR:
tru03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101077688 (sf3b1)
Complex B
101077688 (sf3b1)
Complex C
U2 SnRNP specific factors
101077688 (sf3b1)
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101077688 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
101077688
NCBI-ProteinID:
XP_011605724
Ensembl:
ENSTRUG00000015534
UniProt:
H2URZ8
LinkDB
All DBs
Position
1:14606671..14617447
Genome browser
AA seq
1314 aa
AA seq
DB search
MAAIAKTHEDIEAQILEIQSKKATLVEEGQQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIADREDEY
KQRRRQMIISPERLDPFADGGKTPDPKVQVRSYVDVMLEQNLSKEEREIRLQLAEKAKSG
DLKAVNGSVSSQAAAKRKRRWDQTADQTPSNATPKKMSSWDQADSTAETPGHTPAHTPVN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVEETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRSVKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatcgccaaaactcacgaagacatcgaggcccagatccttgaaattcaaagt
aaaaaggccactctggtagaggagggacagcaaggagtgggccttgactccactggcttt
tatgatcaagaaatctacggcggtagcgacagccgcttcgcaggatatgtcacatctatt
gctgccaatgaacaggaggaagacgacgaagaagattcttcaacaagcttgctgggacaa
aagaagccaggataccatgcacctgtggcaatacttaatgccattccacagtcagatgag
caatatgatccatttgcagagcatcgtccacagaagattgctgaccgagaagatgaatac
aaacaacgtcgcaggcagatgatcatctctcctgagcgtctggacccttttgcagatggg
ggcaaaacaccggaccccaaggtacaagtcaggtcatatgtggatgtcatgttggagcag
aacctctccaaagaggagagagaaatccgtctgcagctggcagagaaggccaagtcaggg
gatctcaaagctgtcaatggctcagtgtcctcccaggctgccgcaaaacggaagcgccga
tgggaccagacagctgaccaaaccccctctaatgctacacccaagaagatgtccagctgg
gaccaggccgactccactgcggagactcctggccatacaccagcacacactccggtaaac
agccgatgggatgaaaccccaggtcgcccaaaaggaagcgagacaccaggggccacccct
agtacccgcatgtgggaccccacgccaagtcacacacctgctggagccgccacacctggg
agagatacacccggccatgccacaccaggacatggtggagccacgggaagtgtgcgtaag
aaccgctgggatgaaacccccaagaccgagagggagaccccgggacatggaagcggctgg
gctgaaacgcctcgcacggataggggagatgaatctgttgaagagactcccaccccaggt
gcaagtaagaggaagtctcggtgggatgagaccccagccagtcagatgggatcctcaaca
ccactactgaccccaggaaaaacgccgataggaacacctgctatgaacatggccacgcca
acaccaggtcacctgatgagcatgactccagagcagctccaagcatggaggtgggagaga
gagattgatgagaggaaccgacctctcacagatgaggagcttgatgccatgttcccagag
ggatacaaggtcctgcctcccccagcaggttatgtgcccatccgtactccagcccgtaag
ctttcagctacaccaactcctattggtggcatgacaggcttccacatgcaggtagaggac
cgctcagtaaaacagatgaacgaccagccttcaggaaacctccccttccttaaacctgat
gatattcaatactttgacaaactactggttgaggtggacgagtccacactcagtccagaa
gagcagaaagaaaggaaaatcatgaaactgctactgaaaataaagaatggaacacccccc
atgagaaaggcagccctgcgtcagatcacagacaaggctcgggagtttggagcaggtccc
ttgttcaaccaaatcctgccattgctcatgtcacctacactggaggaccaggaacgccat
ctgctggtcaaagttattgaccgcattctttacaaactagatgatttggtgcgcccatat
gtgcacaagatcctggtggttattgagcccctgctgattgatgaggactactatgccaga
gtagaaggaagagagatcatctcaaacttggcaaaggctgccggtttggctacaatgatt
tccacaatgagacctgacattgacaacatggacgagtatgtcaggaacaccacggccaga
gcctttgctgtagtggcttcagctcttggtattccctctctcctgcccttcctcaaagct
gtgtgtaaaagcaagaagtcctggcaagcccgacacacaggcatcaagattgtgcagcag
attgccatcctgatgggctgtgcaatcctaccacacttgcgcagcttggtggagattatt
gaacatggtctggtggatgagcagcagaaggtcaggactatcagtgctttagctatagct
gcacttgctgaagctgctaccccatatggtattgagtcctttgactcggttctcaaacca
ctgtggaagggtatccgacaacacagagggaagggtttggctgctttcctcaaagccatt
ggttacctgatcccattgatggatgcagagtatgcaaactactacaccagagaggtgatg
ctcatcctcatcagagagtttcagtcccctgatgaagagatgaagaagattgtccttaag
gtggtgaagcagtgttgtggcactgatggagtggaagccaattacattaaaacagaaatc
ctgccacccttcttcaagcacttctggcaacacagaatggctctggacaggcgcaactac
agacagttggttgacaccacagtggagttggccaacaaggtgggggccgcagaaatcatt
tctcgtatcgttgatgacctgaaagatgaagcagagcagtacaggaaaatggtcatggaa
accattgaaaaaattatgggcaacctgggtgcagctgacattgaccacaagcttgaggag
cagctgattgacggtatcctgtacgccttccaggaacaaacgacagaggactccgtgatg
ctgaatggttttggcacagttgtaaatgcccttgggaaacgtgtaaagccctacctgcct
cagatctgtggtacagtgctgtggcgtctgaacaataagtcagccaaagtccgtcagcag
gctgccgacctcatctcccgcacagccgtggtcatgaaaacatgtcaggaggaaaagctg
atgggtcacttgggtgtggtgctgtacgagtacctgggagaggaataccctgaagtgttg
ggcagcattctgggagcactcaaggctattgttaatgttatcggcatgcacaagatgacc
ccaccaattaaagacctgcttcctcgcctcactccgatcttaaagaacagacatgaaaaa
gtgcaggagaattgcatcgacctggtggggaggattgccgataggggtgccgagtatgtg
tcagcaagggagtggatgaggatttgttttgaactgctggaacttttgaaagctcacaaa
aaagccatccgcagagctacagtcaacacttttggttatatcgcaaaagccattggcccc
catgatgtcttggcaacgctcctcaataatctgaaggtgcaggaacgtcagaacagagtt
tgcaccactgtggctatcgccattgtggcagagacctgttcaccttttaccgtgctgcct
gccctcatgaacgagtaccgcgttccagagctgaacgtgcagaatggcgtgctcaagtcc
ctctccttccttttcgagtacattggagaaatgggcaaagattacatttacgcagtgaca
ccattgctggaggatgctctcatggaccgggacctggtccacagacagacggccagtgct
gtggttcagcacatgtctctgggtgtgtacggcttcggctgcgaagattccctcaaccac
ctcctgaactatgtgtggccaaacgtgtttgagacgtcgcctcatgtcatccaggctgtc
atgggagccctggaaggactgcgggttgccatcgggccctgtcgcatgctgcagtactgc
ttgcagggcctcttccatccagctcgcaaggtcagagatgtgtactggaagatatacaac
tccatctacatcggctcacaggacgccctcatcgcccactatcctcaagtgtataacgat
gagaagaatgtttacgtccgctacgagctggagtatgtcctgtaa
DBGET
integrated database retrieval system
