Tropicibacter oceani: QF118_06590
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Entry
QF118_06590 CDS
T09169
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
try
Tropicibacter oceani
Pathway
try03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QF118_06590 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
try03021
]
QF118_06590 (rpoB)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_06590 (rpoB)
Enzymes [BR:
try01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QF118_06590 (rpoB)
Transcription machinery [BR:
try03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QF118_06590 (rpoB)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QF118_06590 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
DUF6888
Motif
Other DBs
NCBI-ProteinID:
WGW05206
UniProt:
A0ABY8QMH6
LinkDB
All DBs
Position
1377297..1381433
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYKLFLDSGDQPKPMDGEGIKGVFQSV
FPIKDFNETAILEFVDYDLEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVTYELRK
GEGWATKFFPERVRGTRPTYDLVDADSGEVIAEAGKKVTPRAVKKLIDDAKVKNLLVPFE
AIVGKYAAKDIINEETGAIYVEAGDELTWEVDKDGDVTGGTLKELVDAGVTEIPVLDIDN
VNVGPYMRNTMALDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDKEDTQRTLDRDDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVKDRQVTDEVHYMSATEEMRHTVAQANASLDEDGKFVNDLVSTRKSG
DYTLSPSESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRSEAPLV
GTGIEEIVARDSGAAVMAKRAGIIDQVDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTCINQKPLVKVGDTVQKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
IARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEIESLARDRDDELAILDRNIYARLRSMIEGKVAVKGPKGVKPNSEINEDL
LSSLTRGQWWQLALGEEQDAKHVEALHEQYEVQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPIEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARALGLEIDEALQDYRRTGDLTPIREAMRIAYGDEVYEEGIKGMDEDT
LVEAASNVTKGVPIATPVFDGAKEADVNDSLKRAGFDTSGQSVLYDGRTGDQFSRKVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcttcctcggacagaaacgtcttcgccggtactacggcaagatccgcgaa
gtgcttgaaatgccgaacctcattgaggttcagaaatcttcctacaagcttttcctagac
tcgggtgaccagcccaagccgatggacggggaaggtatcaaaggcgtcttccagtcggtt
ttcccgatcaaggacttcaacgaaaccgccattctcgagttcgtcgattacgacctcgaa
aagcccaagtatgacgtcgaagagtgcatgcagcgcgacatgacctacagcgccccgctg
aaggtcaccctgcgtctgatcgtgttcgatatcgacgaagataccggcgcgaaatccgtc
aaggatatcaaggaacaagacgtctttatgggcgatatgcccctgatgaccccgaacggc
acctttgtcgtgaacgggaccgaacgtgtgatcgtttcccagatgcaccgttcgccgggc
gtgttctttgaccacgacaagggcaagacccattcgtcgggcaagctgctgttcgcctgc
cgcatcattccctaccgcgggtcgtggctggactttgaattcgacgccaaggacatcgtc
tttgcccggatcgaccgccgccgcaagctgccggtgacgacgcttctgtacgctcttggt
ctggaccaagaggcgatcatggacgcctattacgacacggtgacctacgagctgcgcaaa
ggtgaaggttgggcgaccaagttcttccccgagcgtgtgcgcggcacccgcccgacctat
gatctggtcgacgccgacagcggcgaagtgatcgccgaagccggcaagaaggtcacgccg
cgcgcggtgaaaaagctgatcgacgacgccaaggtcaagaacctgctggtgcccttcgag
gcgatcgtcggcaagtatgccgccaaggacatcatcaacgaggaaaccggcgcgatctac
gtcgaggctggcgatgagctgacctgggaagtggacaaggacggcgacgtcaccggtggc
acgctcaaggagctggtcgacgccggtgtgaccgagatcccggtcctggacatcgacaac
gtcaacgtcggcccctacatgcgcaacaccatggcgctggacaagaacatgggccgcgat
accgcgctcatggacatctaccgcgtcatgcgcccgggcgagccgcccaccgtcgaagcc
gcgtcggccctgttcgacacgctgttctttgacagcgagcgttatgacctgtccgccgtt
ggccgcgtcaagatgaacatgcgtcttgcgctggacaaggaagacactcagcgcacgctg
gaccgtgacgacatcgtggcctgcatcaaggccctggtcgacctgcgcgacggccgcggc
gacatcgacgacatcgaccaccttggcaaccgccgggtacgttcggtcggcgaattgatg
gaaaaccagtaccgtgttggcctgctgcgcatggagcgtgcgatcaaggaacgcatgtcc
agcgtcgagatcgacactgtcatgccgcaggacctgatcaacgccaagccggcggccgcc
gcagtgcgcgaattcttcggttcgtcccagctgtcgcagttcatggaccagaccaacccg
ctgtccgaagtgacgcacaagcgtcgcctgtcggcgcttgggccgggcggtctgacccgc
gaacgcgctggctttgaggtgcgcgacgtgcacccgacgcactatggccggatgtgcccg
attgaaacgccggaaggcccgaacatcggtcttatcaacagcctcgccacctttgcccgc
gtgaacaagtacggtttcattgaaaccccgtaccgcgtggtcaaggatcgtcaggtcacc
gacgaagtgcattacatgtccgcgaccgaggaaatgcgccacaccgtggcacaggccaac
gcatcgctggacgaggacggcaagttcgtcaacgatctggtcagcacccggaaatccggt
gactacaccctgtcgcccagcgaaagcgtcgatctgatcgacgtgtcgcccaagcagctg
gtttcggtcgcggcatcgctgatccccttccttgaaaacgacgacgccaaccgcgccctg
atgggttcgaacatgcaacgtcaggcggttccgaccctgcgctcggaagcgccgctggtc
ggcaccggcatcgaggaaatcgtggcgcgcgattccggcgcggccgtcatggccaagcgt
gcgggcatcatcgaccaggtcgatgcgcagcgtatcgtgatccgggccaccgaagatctg
gaattgggcgatgcgggcgtcgacatttaccgcatgcgcaaattccagcgttcgaaccag
aacacctgtatcaaccagaagcctctggtgaaggtgggtgacacggttcagaagggcgaa
gtgattgccgacggtccgtcgaccgacatgggcgaactggccctgggcaagaacgtcatc
gtcgccttcatgccctggaacggctacaactacgaagactcgatcctgatctcggaacgc
atcgcccgcgatgacgtgttcaccagcgtccacatcgaggaattcgaagtggccgcccgt
gacaccaagcttgggcccgaggaaatcacccgcgacatccccaacgtcggcgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtctatatcggcgcggacgtcgagccgggcgat
atccttgtcggcaagatcaccccgaagggcgaaagcccgatgacgccggaagaaaagctt
ctgcgcgccatctttggtgaaaaggcatcggacgtgcgcgacacctcgctgcgtgtgaag
cccggtgattacggcacggttgtcgaagtgcgcgtctttaaccgccatggcgtggaaaaa
gacgaacgtgcgctgcagatcgagcgtgaagagatcgaaagcctggcgcgcgaccgcgac
gacgagctggcgatccttgaccgcaacatctatgcgcgtctgcgttcgatgatcgaaggc
aaggtcgcggtaaagggcccgaaaggcgtcaagccgaactcggaaatcaacgaggacctg
ctgagcagcctgacccgcggtcagtggtggcagctggccctgggcgaagagcaggacgcc
aagcatgtcgaggccctgcacgagcagtacgaagtgcaaaagcgcgctttggatgcccgt
ttcgaggacaaggtcgaaaaggtccgccgcggcgacgatctgcccccgggcgtgatgaag
atggtcaaggtcttcatcgccgtgaagcgcaagcttcagccgggcgacaagatggccggc
cgtcacggcaacaagggcgtcatttcccgcgttgtgccgatcgaggacatgccgttcctt
gcggacgggaccccggtggatttctgtctgaacccgctgggcgtgccgtcgcgcatgaac
gtcggtcagatccttgaaacccacatgggttgggccgcgcgtgcgctgggtctggaaatc
gacgaggcgctgcaggactatcgccgcaccggcgacctgacgccgatccgcgaagccatg
cgcatcgcctatggcgacgaggtctatgaagagggcatcaagggcatggacgaagacacg
cttgtcgaagcggcttcgaacgtgaccaagggtgtgccgatcgcgaccccggtctttgac
ggcgccaaagaggcggacgtgaacgactcgctcaagcgggccggtttcgacacctcgggt
cagtcggttctgtacgatggccgcaccggcgatcagttcagccgcaaggtgacggtggga
gtcaagtacctgctcaagctgcaccaccttgtcgacgacaagatccacgcccgttccacc
ggaccgtactcgcttgtcacgcagcagccgctgggtggtaaggcgcagttcggcggccag
cgtttcggggaaatggaggtctgggctctggaagcgtacggcgccgcctacaccctgcag
gaaatgctgacggtgaaatcggacgacgtggcaggccggaccaaggtctatgaaagcatc
gtcaagggtgaggacaactttgaagccggcgtgccggaatccttcaacgttctcgtcaaa
gaggtccgcggtctgggcctcaacatggaactcctggatgcggaggaggatgagtaa
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integrated database retrieval system
