Thiothrix subterranea: HMY34_06720
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Entry
HMY34_06720 CDS
T07831
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMY34_06720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsb03021
]
HMY34_06720 (rpoB)
03400 DNA repair and recombination proteins [BR:
tsb03400
]
HMY34_06720 (rpoB)
Enzymes [BR:
tsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMY34_06720 (rpoB)
Transcription machinery [BR:
tsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMY34_06720 (rpoB)
DNA repair and recombination proteins [BR:
tsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMY34_06720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QQZ28477
LinkDB
All DBs
Position
complement(1356983..1361086)
Genome browser
AA seq
1367 aa
AA seq
DB search
MGLSYTEKKRIRKDFGKRPQILDVPNLLTIQLDSYRHFLQLEKPVAERRDVGLHAAFSSV
FPIVSYNNYVALEYADYRLAEPVFDVQECQLRGLTFATSLRVKLRLVIYDKDAPADAKVV
KAIKEQDVYLGELPLMTDKGTFIINGTERVIVSQLHRSPGVFFEHDKGKSNSAGKLLHSA
RVIPYRGSWLDFEFDPKDSIFVRIDRRRKLPATILLRALGMQNEGILDVFFDKTTVHLSD
SSIEMELIPERLRGDLASFDIMLDGQVLVETGRRITAKHIRQLEKSGMNKLVVPNDYMTG
MGSTPGKILAHNIIDSSTGELLASANDELTPALLEKLRDNDIKTFKILYTNDLDRGPFVS
NTLKIDPSSSQLEAQVEIYRMMRPGEPPTKEAAENLFNNLFFVDDRYDLSGVGRMKFNRR
LGREEATGSGVLDQNDILDVLKKLIDIRDGRDDVDDIDHLGNRRVRSVGEMAENAFRVGL
VRVERAVKERLTMAESEGLMPQELVNSKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKR
RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLE
TPYRKVIDSKPTMQIDYLSAIEESNYVIAQASAELDDEGRLSDEFVSCRHRNEFTLKQAN
EVQYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRADKPLSGTGMERAV
AQDSGSAISARRGGIIDSVDAGRVVVRVNDDEADEVRGGVDIYSLIKYTRSNQNTCINQR
PIVKVGDVIARGDVLADGSSTDLGELALGQNMFIAFMPWNGYNYEDSILLSERVVDEDRY
TSIHIEEMSCLARDTKLGPEEITADIPNVSESLLAKLDECGIIHVGAEVKPGDILVGKVT
PKGESQLTPEEKLLRAIFGEKASDVKDTSLRVSTGMTGTVIDVRVFTRDGVERDARALAI
QEEDLKKVRKDLRDELRIYEADIFDRFAKLVIGKEAVGGPNRLTSGTVVTESYLHNLEKK
DWFAIRMQDDEVNTQLESLSHQIDEKKKHYETRLHKQRDKLMAGDDLAPGVLKMVKVYIA
VKRRMQPGDKMAGRHGNKGVVSRIVPVEDMPYLANGQTVDIVLNPLGVPSRMNVGQVLET
HLGWAAKGLGEKIARMIDTKAKIDELRQFISEIYATGGNPNQDEMIAELTDDEVITLANN
LRKGVPMATQVFDGADEAEIKAMLRLADLPESGQTQLCDGRTGDTFERKVTVGYMHMLKL
NHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
DDVNGRNKMYKNIVDGDHFMEASMPESFNVLMKEIRSLGLNIELERD
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgggactgagttataccgaaaagaaacggatccgcaaagattttggtaagcggccgcag
atactggatgtgcctaacttactcaccattcagttagattcctatcgacacttcctgcaa
ctggaaaagccagtcgcagagcgcagggacgttggtttgcacgcggctttttcctcggta
tttccgattgttagctacaacaactatgttgcgttggagtatgccgactatcgtttggca
gagcctgtgttcgatgtgcaggaatgccagttgcgcggtttgacgtttgcgacatcactg
cgtgttaaattgcgtctggtcatttatgacaaagatgcacctgcggatgccaaagtggtc
aaggccattaaagagcaggacgtttatctgggcgaattgccactgatgacggataaaggc
acatttattattaacggtactgagcgtgttatcgtttctcagttgcaccgttcaccaggc
gtgttctttgagcatgacaagggtaaatccaattccgctggcaaattgttgcacagtgcg
cgggtaattccttaccgtggttcatggctcgatttcgagttcgacccgaaagattctatt
tttgtacgtatcgaccgtcgccgcaaattgcccgcgacgattttgctgcgtgcactgggt
atgcagaatgaaggcattctggatgtcttttttgacaaaacgacggtgcatttgagtgac
agttccattgaaatggagttaatccctgagcgcttgcgcggcgatttggcttcatttgac
attatgctggacggccaagttttggtagagactgggcggcgcattactgctaagcatatc
cgtcagttggaaaagtccggcatgaacaagctggttgtacccaacgattatatgaccggc
atgggcagtacacccggcaagattttagcacacaacattattgactcttctacgggtgag
ttgttggcctctgccaatgacgaactcacccctgcgctcttggaaaaattgcgcgacaac
gatattaagacatttaagattctctacaccaatgatttagatcgtggcccgtttgtctcc
aatactctgaagattgatcccagtagtagccagttggaagcacaggttgaaatctatcgc
atgatgcgtcctggtgagccaccgaccaaagaagcagcagaaaacttgtttaacaatctg
ttcttcgtcgatgaccgctatgacttgtctggcgtgggtcggatgaagttcaaccgtcgt
ttgggacgtgaggaagcgaccggttcgggtgtattggatcaaaacgacattctcgatgtg
ctgaaaaagctgatcgacatccgtgacggtcgcgatgacgtcgatgacatcgaccacctc
ggcaaccgtcgtgtgcgtagcgtcggtgaaatggctgaaaatgccttccgtgttggcttg
gtgcgtgttgaacgtgcggtcaaagagcgtttgacgatggcggaaagcgaaggtctgatg
ccgcaagaactggtgaattccaagccagtttcggcggcgatcaaagagttcttcggttcc
agccagttgtcacagttcatggatcaaaacaatccgctgtcggaagtgacccacaaacgc
cgtatttctgcgctggggccgggcggtttaacccgtgaacgtgcaggctttgaagtgcgt
gacgtacatccaacccactacggtcgggtttgtccaatcgaaacgccggaaggcccgaac
atcggtctgatcaattcattggcggtgtatgcgcgtaccaatgactacggtttcttggaa
acgccttatcgcaaggttattgacagtaaaccgaccatgcagattgactacctgtcagcg
attgaagaatccaattatgtgatcgcgcaggcgagtgcggaattggatgatgaaggtcgt
ttgtcagatgagttcgtctcttgccgtcaccgtaatgaatttacgttgaagcaagcgaac
gaagtccagtacatggacgtatcgccgaagcaaatcgtatccgtggcagcatccctgatc
ccattcttggaacacgatgacgcgaaccgcgccttgatgggttctaacatgcaacgtcag
gcagttccttgcttgcgtgcagacaagccattgtctggtacgggcatggagcgtgcggta
gcgcaagactccggttcagcaatttcagcacgtcgtggcggtattattgactccgtggat
gcagggcgtgtggtcgtgcgtgtgaatgacgatgaagccgacgaagtgcgtggcggtgtt
gatatttacagtttgatcaagtacacccgttccaaccaaaacacctgcattaatcaacgc
ccgattgtcaaagttggtgacgtcattgcgcgtggcgacgtattggcggacggttcttcc
acggacttgggtgaattggcgttagggcagaatatgttcatcgcctttatgccttggaac
ggttacaactacgaagactcgatcttgctgtctgagcgcgtggtggatgaagaccgttat
acgtcgattcatatcgaagaaatgtcgtgtctggcgcgtgataccaagctggggccagaa
gaaatcacggcggatattccgaacgtgagcgaaagcctgctggcaaagttggacgaatgc
ggcattatccacgtgggtgcggaagtcaaaccgggtgatattctggtcggtaaggtgaca
cctaagggcgaaagccaattgacgccagaagaaaaattgctgcgtgccatctttggtgaa
aaagcgtctgacgtaaaagatacctctttgcgggtgtcaacgggcatgacgggtacggtt
atcgacgtgcgtgtgtttacccgtgatggggttgaacgtgatgcgcgtgccttggcgatt
caggaagaagatctgaagaaagttcgcaaagatttacgcgatgaattgcgtatttatgaa
gcggatatttttgaccgttttgcgaagttggtgatcggtaaagaggccgttggtggccct
aatcgcttaacgtctggcacggttgtgaccgaatcttacttgcataatctggagaaaaaa
gattggttcgccatccgtatgcaagatgatgaggtgaatacccaactcgaatcgctgtct
caccagattgatgagaagaaaaagcactacgaaacccgtttgcacaaacaacgtgacaag
ctcatggcgggcgatgacctcgcgccgggtgtgctgaaaatggtcaaagtctacatcgcg
gtgaaacgtcgaatgcagcctggggataaaatggcaggtcgtcacggtaacaagggtgtg
gtttcacgcatcgtgccggtggaagacatgccatacctcgccaatggtcaaacagtggac
atcgtattgaatccgttgggcgttccatcgcgtatgaacgttggtcaggtattagaaact
cacttaggttgggcggctaaaggcttgggcgaaaagattgcgcggatgattgataccaaa
gcaaaaatcgacgaattacgtcaattcatcagtgaaatttacgccacgggcggtaatcca
aatcaagatgaaatgattgctgagttgaccgatgatgaagtcattacgttggcaaacaat
ctgcgcaaaggcgtgccgatggcaacacaggtatttgacggtgcggatgaggccgaaatc
aaagccatgttgcgcttagccgatttgccagaaagtgggcaaacgcaattgtgtgacgga
cgcaccggcgatacgtttgagcgtaaagtaaccgtgggttacatgcacatgctcaaactc
aatcacttggttgacgataaaatgcacgcacgttccaccgggccttacagccttgttacg
caacagcctttgggtggtaaagcgcaatttggtggtcagcgtttcggggaaatggaagtt
tgggcgctggaagcttacggcgcggcttacaccttgcaagaaatgcttacagtcaagtcg
gatgacgtgaacggtcgtaataagatgtataaaaacattgtggacggcgaccacttcatg
gaagccagtatgcctgagtccttcaatgtattgatgaaggaaatccgctcactgggtctg
aatatcgaactggaacgggattaa
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