Tritonibacter scottomollicae: R1T40_09470
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Entry
R1T40_09470 CDS
T09466
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T40_09470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsco03019
]
R1T40_09470
03009 Ribosome biogenesis [BR:
tsco03009
]
R1T40_09470
Enzymes [BR:
tsco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R1T40_09470
Messenger RNA biogenesis [BR:
tsco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R1T40_09470
Ribosome biogenesis [BR:
tsco03009
]
Prokaryotic type
rRNA helicases
R1T40_09470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
WOI34932
UniProt:
A0ABZ0HKG8
LinkDB
All DBs
Position
1840877..1842949
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AA seq
690 aa
AA seq
DB search
MIPTLQQALERRGYTSLTPVQEAVSDPELAGADLLVSAQTGSGKTVGFGIAIASTILEED
GRFARAGTPLALVIAPTRELALQVKRELTWLYGDAGAVLASCVGGMDMRDERRALERGAH
IVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILQETPEERQTLLFS
ATVSKPIATLAQTYQTDAQRISTINKSEQHSDISYLSHVVAPHDVENAIINVLRFHEAPN
AIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQAERAGALQAMRDGRARICVATDVAAR
GIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLRDAKLS
AEWVDAPSADEVRGRDMERMLSDAVWTEEAPESQAETLAKLVESFSPEQLAAGYLRLWSA
ARSAPEELTDVASVDARKKKEDRVPFGPSVWFAIDGGRDAGADPRRLLPMLCKAGGIDKS
AIGAIRIVGDKSYAEISQDKVDGFMATLGGEMALDDGSALERLNEAPNLPERSKPPFRKG
GAPGGGKGRGGFGGGKPGYKGGDRGDYKGGGDRKSGGDYKSDRKPYRAREDSTDHPVKPR
AAKPRPSGDKPAYDKPRGDKPRGDKAKFDKPRSDKPRGDKPKFDKPRSDKPRSDKPKGPP
PPAGKPSSKKNKARGASDTSKRFTPPSKRG
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
ttgatacccaccttgcagcaggcgctagagcgccgtggttacacttctctcacgcctgtg
caggaggcagtctccgacccagagctggcgggagcggacctgttggtgtcggcacagacc
ggatccggcaagacggtgggatttggcatcgccattgcatccaccatcctcgaagaggac
ggccgctttgcccgtgccggcaccccgctggcgctggtgatcgccccgacccgcgagctg
gcgctgcaggtgaagcgcgagctgacctggctttatggtgatgcgggcgcggtgctggcc
tcctgtgtgggcggcatggacatgcgcgacgaacgccgcgcactggaacgcggcgctcat
atcgtcgtcgccaccccgggccgtctgcgggatcacatcacccgtggttccatcgaccta
agcggcgtcgccgccgtggtgctggacgaagccgacgagatgctcgacctgggcttccgc
gaggatctggagttcatccttcaggaaaccccggaagagcgccagaccctgctgttctcg
gccacggtgtccaagccgatcgccacgctggcgcagacctaccagaccgatgcgcagcgg
atttccacgatcaacaaatccgaacagcacagcgatatttcctatctcagccatgtggtt
gcgccgcatgacgttgaaaacgccatcatcaacgtgctgcgctttcacgaggccccaaat
gccatcgtctttgccaatacccgcgctgcggtgaaccggctgctgacccggctgtcgaac
cgcggttttcaggtggtggcactgtcgggcgagctgagccaggcggaacgcgccggtgcc
ctgcaggcaatgcgcgatggtcgcgcccggatctgtgtggccaccgatgtggcggcgcgc
ggcatcgacctgccgaacctcgatctggtggtgcatgccgatctgccgtcgagccatgag
accctgctgcaccgttcaggccgcaccgggcgcgccgggcgcaagggcgccagcgcgctg
atggtcacgccgcgctccgtgcgcaaggccgaacgcctgctgcgcgatgccaaactgtca
gcggaatgggtcgatgcgccctccgccgatgaggtgcgtggccgcgacatggagcggatg
ctgtccgacgccgtctggaccgaagaggcccccgaaagccaggcggaaacgctggcgaaa
ctggtcgagagcttctcacccgagcagctggccgctggctatctgcgcctgtggtccgcc
gcccgctccgcgccggaagagctgaccgatgtggcctccgtggatgcccgcaagaagaaa
gaagaccgcgtgccctttggcccctcggtctggtttgccattgatggcgggcgcgacgcc
ggtgccgatccgcgtcgcctgctgccgatgctgtgcaaggccggcggcatcgacaaatcc
gccattggtgcgatccgcatcgtcggcgacaagagctatgccgagatttcgcaagacaag
gtcgatggcttcatggccacccttggcggcgaaatggcgctggatgatggctccgcgctg
gagcgtttgaacgaagcgccaaacctgcccgaacgctccaaaccgcccttccgcaaaggt
ggcgcacccggtggcggcaagggccgtggtggctttggcggcggcaagcccggctacaag
ggcggtgatcgtggtgactacaagggcggcggcgaccgcaagagcggtggcgactacaag
agcgaccgcaagccttatcgtgcccgcgaggacagcacagaccacccggtaaaaccacgc
gcggccaaaccacgcccgtccggtgacaaacccgcctatgacaaaccccggggcgacaag
ccgcgcggggacaaggcgaagtttgacaagccgcgctcggacaaacctcgcggcgacaag
ccgaaattcgataaaccgcgctccgacaagccgcgcagcgacaagcccaagggcccgccg
ccccccgcgggcaagccctccagcaagaagaacaaggcccgcggtgcttcggatacctcc
aagcgcttcaccccgcccagcaagaggggctaa
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