Trachymyrmex septentrionalis: 108748487
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Entry
108748487 CDS
T11226
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep04512
ECM-receptor interaction
tsep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108748487
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108748487
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tsep00535
]
108748487
Proteoglycans [BR:
tsep00535
]
Extracellular matrix (ECM) proteoglycans
Others
108748487
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108748487
NCBI-ProteinID:
XP_018342187
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MYLQTWIFAIAHITYAQYVVAKRGLCNGYKSGIDDLQTFEFISKLKLDLLDARYSGMTKV
RGSNRMQTAYRLEKGTDVTLPTKDIIPSGLPEEFSLVYTLRARKSPKYPWHVIKIANVNG
DAQFLITMNSRKRTLDFSSIDHEGELQTISFANDRVFDRGWHKVNFGVFKDKLVLNVDCE
FVGVEDLKPRGSIKVDGDLSIAKMNNSKITVPIDLQWMVLTCDPTRDERETCKELPKIVE
AASLQIKPICNTICPQGPPGFNGSNGFPGPPGPPGAPGPIGMSGSIGFPGQPGPPGEQGR
IGAPGNTGARGFPGLQGSKGSIGSTGPPGLPGSPGRKGERGDMGFPGLKGDQGPRGFPGP
PGNADDFLHRSPEYKGEKGAKGERGDNGIQGQPGEKGEPGDRGYPGLDGSRGRDGASGLP
GLPGPPGLPGPAGPKGNTVYTNTSNIPGPQGPRGIIGLPGPSGPPGLPGLPGPPGSPGQT
GPKGDIGERGRDGTPGLTDNNVISGLPGPEGPIGPPGDDGLPGEKGEIGPMGPSGPSGNP
GKDGYPGLPGPQGLPGPYGEPGSPGLRGLDGLAGKSGSPGYDGKPGQKGSKGQKGEQGLA
GPRGLPGNSGSMGSPGAPGVPGLEGRPGLPGPSGPIGPSGPPGPPGLPAANSSFGNIGSP
GLEGPRGLPGPPGIPGERGAPGERGLEGQIGPPGISGKDGAPGLQGLPGNRGQTGLPGLQ
GLPGRSISEAEIRDICATVLREKMTEMAALMQGLPGPPGRGRPGRPGSPGPQGRPGDPGP
PGLPGDRGFVGLPGSQGPIGPQGLPGERGEKGDRGPEGIGLEGPPGPTGLPGPPGNDGVS
LPGRQGDRGESGRPGVPGARGPPGAQGPPGYCEFCNYPSSNYLHNHGNEKGP
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgcaaacatggatatttgcaatagcgcacataacttatgctcaatacgtcgtc
gccaaacgcggtctatgcaatggctacaagtccggcatagacgatcttcagacattcgag
tttatcagcaagctgaaattggatctgttggacgcgcgttacagtggcatgacgaaggtc
cgaggcagtaatcgcatgcagacggcataccggctggagaaaggcactgatgtcaccctc
ccgacgaaagacatcataccaagcgggcttccagaagagttctcgttggtgtacacgctg
agagctaggaaatcaccgaagtatccttggcatgtcattaagattgcgaacgtgaacggc
gacgctcagtttctcatcacaatgaattccaggaagcgaacactggatttttcatcgatc
gaccacgagggagaattacagacgatctcttttgcgaatgatcgcgtgttcgacaggggt
tggcacaaggtaaacttcggagtgttcaaggataaactagtccttaacgtcgactgcgaa
ttcgttggtgtggaagatttaaaaccacgcggttcgattaaagtcgacggggatctatcg
atagctaaaatgaacaatagtaaaattactgtgccgattgacttgcaatggatggtttta
acttgcgatccaacgagagacgaaagagaaacgtgtaaagagctaccgaaaatcgtagaa
gccgcttcgcttcaaataaaacccatctgcaatacgatctgtccgcaaggaccacctgga
tttaatggttcaaatggatttcccggtccacctggaccacccggagcaccggggccaatt
ggtatgtcaggttcaattggatttccagggcaaccgggaccgccaggtgaacaaggaagg
ataggagctccaggtaatactggcgctagaggttttccaggattgcaaggttctaaagga
tcaataggatccacaggaccaccgggcttaccaggatcaccaggccgaaagggtgaaaga
ggtgatatgggatttccgggtctgaaaggagatcagggtcctcgagggtttccgggtccg
ccagggaatgcggatgattttttgcatagatcgccagaatacaagggcgaaaaaggagcc
aaaggtgaacgaggagacaatggcattcaaggacagccgggtgaaaaaggcgaacctgga
gacagaggatatccgggattagatggatctcgcggacgtgacggtgcatcaggtcttcct
ggtcttccgggacctcctggtcttccgggacctgctggaccgaaaggcaacactgtatat
acgaacacatctaatattccaggaccacaaggtcctcgtggtataataggactgccagga
ccatcaggcccaccaggactgccaggattgccaggaccgcctggttcaccaggccaaaca
ggtccaaagggcgatatcggggaacgtggtcgagatggcacaccgggattgacggataat
aacgtcatatcaggactacctggtcccgagggacctattggacctcctggtgatgatggt
cttccaggtgaaaaaggagaaattggaccaatgggtccttcaggaccatctggaaatcca
ggaaaggatggatatccaggattaccaggaccacagggacttccagggccatacggagag
ccagggtctccaggacttcgaggtttagatgggctcgcaggaaaatcagggtcgccagga
tacgatgggaaaccaggtcaaaagggtagcaaaggacagaaaggtgaacaaggtcttgcc
ggacctcgtgggttaccagggaattcgggctcaatgggctcaccaggagcaccaggcgta
ccaggcttagaaggaaggcccggcctacccggcccttcaggaccaataggaccatcagga
cctccaggccctcccggtcttccagctgcgaacagcagttttggtaacattggtagtccc
ggtctcgagggacctagaggtctaccaggtcctccaggcataccaggtgaaagaggagct
cctggagaacgaggattagaaggtcagataggaccacctggaatatctggtaaggacgga
gcgcctggattgcaaggtctccccgggaacagaggtcaaacgggattacctggactccaa
ggtctgccgggacgtagtataagcgaggcggaaattcgtgatatttgcgctactgtcctg
agagaaaagatgaccgaaatggcagcgttaatgcaaggcctacctggcccgcccggtcga
ggccgtccgggccgtcctggatcccctggacctcaaggtcgcccaggtgatccaggcccg
ccaggtttgccaggagatcgtggattcgtcggtttacctggttcgcaaggtcccatcggt
ccacaggggctacctggtgaacgtggagaaaagggggacagaggtcccgagggaatcggc
ttagaaggaccgcctggtccaacaggtttaccagggcctcctggtaatgacggcgtcagt
ttacccggaaggcagggagacagaggtgaatcaggcagaccaggtgttcctggcgcgaga
ggaccaccaggagcgcaaggaccacccggatattgcgaattctgtaattatcctagcagc
aattacttgcacaatcatggcaacgagaaaggtccttaa
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integrated database retrieval system
