Trachymyrmex septentrionalis: 108754750
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Entry
108754750 CDS
T11226
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108754750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108754750
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108754750
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108754750
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108754750
NCBI-ProteinID:
XP_018352814
UniProt:
A0A195EVV6
LinkDB
All DBs
Position
Unknown
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKSFEDICQEISDLVQCGGLEADRHLFRCLISCVDFSKG
ELSDSSAKDYFQTKLLKQECNSLLSKPSFISTLCFAIDNPLHHQKSLNFSPKFFTNLKKT
LGLTLVQEVTFAIALQHSENAEIRALALEHTQKQLPELIKNYINSETSNKHQEGGLHDSL
PQVLHLILSQAFHTANPYNLPVETKEKFLKHLRRDFPRELVPVVLAPFLYPADEETLQFK
IELNMAVTQMDSNTLVELIMELGYSFTSNIEECRSALTGLGAREISPACVARVLSQMARS
CSNLDDAGGLQTFWGNSTTSQDSNKEKSSDSTIPTTWNVEVFVLTLKEIQSTLSWNEVIV
KLDHAEFLIKDRQGLNLLITGLKLGLQHQGYPPDMFPVELLYRHWENVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMAERGLYTPVHEIFK
WPLQHCPDVLILALLQINPPFTLLRQEMFTTLLPIFLGNHPNSAVILHHAWHANNPKIKT
LIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDPLGNLGSSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPAGIEKARMPETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KEYQTYCEHVRTISHFTEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTM
TTTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDK
TAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKL
PEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLK
SLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLN
LKFEIEVLCKNLSIDVGELKPIIYLKDPEKLRNLDYQLSHPNKKSEPTSNQQQSQGPMEE
LVGSTTSGTINPQTAPPADTTPSLPAGQPEPRFNYMDISVTGIANISQHITINNQIPLFQ
THPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEELRVRTAARHM
ARNLTAGMAMITCRDQILASISTNLKQAFLTALIGTTPQQKELVELAANQVATENMELAC
AFVQKTAIEKAVPEMDKRLLNEVELRKLARQEGRRYCDPIAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQTLFIPKPISEAPLTAFTPNSAMAAVATAQVAAYA
TVAVSNDEVGAMLEKLATEVEVLAAAMAPAVPPQQHAILHSLLESIILTRRSRDANAAMA
LLKKAVEGLLDGPIFNSGVIDSDNLIQRYRELHLRILKCLQDQRAYGMQWTNKHVTRCLI
ECREDYRYNFEAVDYLIRSHLISLPQYDIAVAQAVEAGNALATVFAMQLVQLYLIDERQA
THVTETDLFHTLEILARMSHHRTPPEGISLYRLTSLVESLRANHDTNAVLVDRAPAGPTA
HIHSGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGI
LKTDDLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGD
ATNTHTKINLLNKVLGIVAGVLLQDHEIRGADFQQLPYHRIFIMLFLELCAPEPVLEAVN
FQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPGQKCWGMYAQLLIDLF
KYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLI
LSAFPRNMRLPDPFTPNLKVDMLQEIAQPPRVLTNFASTIQPLTFKKELDSYLKARAPVT
FLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAILFIRSKGHAPNMSTIAHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTTET
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaaaaaaagtttcgaggacatctgtcaagagatatcggatttggtgcagtgtggtggt
ctagaggcagatcgacatttgttccgctgtctgatatcgtgcgttgacttttccaagggt
gaactgtcagattcgagtgcgaaagattatttccaaacaaagttgctaaaacaggagtgt
aatagcttgttgagcaaaccttcatttatatctactttgtgctttgctatagataatcct
ttacatcatcaaaagtcattaaatttttctccaaagttttttactaatttgaagaaaaca
cttggcttgactttggtacaagaggtcacgtttgcgattgcgttgcagcattcagaaaac
gctgaaattcgtgctttagccttagagcatactcaaaagcagctgcctgaattgataaaa
aattacataaactctgagactagtaacaagcatcaggaaggtggtttgcacgactctttg
cctcaggtccttcatctgatacttagccaagcttttcatactgccaatccatacaattta
cctgtggaaacaaaagaaaaatttcttaaacatttgcgacgtgactttcctcgtgaacta
gtaccagtggtactagcaccattcttgtatccagcagacgaggaaactctgcaattcaaa
attgaattaaacatggctgtcactcaaatggatagcaacactcttgtagagttgataatg
gaattaggatacagctttactagtaatatagaagaatgtcgatcggcattaacgggttta
ggtgccagggagatatccccagcatgtgttgctcgtgtattatcacaaatggcacgtagc
tgtagcaacctggatgatgctggaggcctacaaacattttggggcaattcaactacctcg
caagactccaataaagagaaatcatcagacagtaccattcccacaacatggaacgttgaa
gtattcgtcctaacattgaaagagatacaatctacattgtcttggaacgaagtcatcgtg
aaattggatcatgcagaattccttattaaagacaggcaaggtttaaacttgttgatcacg
ggtctcaagttgggcttacaacatcaaggatatccacctgatatgtttcctgttgagctt
ttgtatcggcactgggaaaatgtagaaggccaattttctttaattcagcaaatccttaag
tgcccagacatattttgtttcgctgattatccgtatcattcggtaacagtcgatgtattg
aaagcagctcctgagggcgatagtaaggaaggacaaacttggcgatcattgaacatagtc
gagttacttttacatatggctgaaagaggcttgtacactcctgtacatgaaatcttcaaa
tggccactccaacattgcccggatgtgctcattttagcattactacagataaatccacct
tttacattactaaggcaggaaatgtttactacgctattaccaatctttcttggcaaccat
ccaaattctgctgtgatactgcatcatgcgtggcatgctaataatcccaaaataaaaaca
cttataatgcatgctatggcggattggtatacgcgtggtgatcacgatcaaacgagatta
tcgcgcatcttggatgttgcgcaggatttaaaagcactatctgctttacttaattcacaa
tcttttccatttgtcattgatcttgcttgtttggcatctcgacgagagtatctgaaactt
gaaaaatggttaacagacaagattagggaccatggagaagtttttgttgctgcatgtgtc
aaatttctacaacgacggtgtcctcaagtcatgggccctggtatcaaagaagatcctaca
gttcccaaggcaagccaactgccacaggaaacactcactacaattttggcttgcttgcaa
gtttgcgccggaagtgtctcccaagaactttcggaattaataatgacgatggtgcaaaat
tgtagtctaatgctgagtaagagcaccatgaatagaccaccaccaccgggagttctgagg
catcgaggattagaaccgtttaatccagcaactttgggaagccaactattttcctcgaag
caagtggatcctcttggaaatcttggttcaagccttgcttccatgggtctaggcacaggc
cttggaccgccaagtagctccgcattcaatttacctggcgcgctaggtcctttggtttcg
gcgcccggatctccctcacgactcatgggaccttctcccagtccatttcctatgttgccg
ttatcttcgcaattacactcaggtccagttggtactcagggaccatctgtgcttcctggt
ggtacaataggtggattgggacgtctcggaccgccagccggtattgaaaaagcgagaatg
ccggaaacctccaatttgtttccagatatgggacaaaatgtatccaaagaggttgaagac
gaagctaacagttattttcaacgtatttacaatcatcctccacatccgactctatcgatc
gacgaagtgcttgatatgttgaaaaaattccaagactctggtattagacgggaaagagaa
gtgtttaactgtatgctgcgaaatttattcgaagaatacagattttttccacagtatccg
gaaaaggaattgcaaataacagcacaattgtttggtgggattatcgaaaggggtcttgtt
aacagttatatgacacttggattagctctacgattcgttcttgatgcgcttaaaaaacct
gaaggtagcaagatgtattattttggtataacggctttggatcgatttaagagtcgtttg
aaggaatatcaaacatactgcgaacacgtccgaacgatttcgcatttcaccgaatttcca
cctcacttagtggaatatatcgaatacggattacaaggacaagaaccaccatcgaggcca
caaggtccaaaaactttagcggcaatgttggctccagtaacaaccccgtacaaaactatg
actacaactaccatcacaactagcactacacaagcgaaaccatctacgactccgactacg
tctctttcagctagaccttctatgccctcggtcgccaatgcaactaatatcgatacgtta
cttgtggcaacagataaagaagaaaaaataaccacaccaccggaagctttacaagataaa
actgctttcatcttcaataatctcagtcaattgaacctgcaacagaaatgtgacgagatc
cgtgagattgtcacggaagaatactggccatggatggcacagtatttggtgatgaaacgt
gccagtatagaattaaactttcatgctctatactctaattttttggattgtataaaatta
cctgaagtgaataaaatggtaacaagagaaacattccgaaatatcaaggttctcttacga
agcgataagggaatagcaaatttctctgaccggtctctattgaaaaatttaggacactgg
ctcggaatgttgacacttggtagaaacaagcctattttacagatagacatagatttaaaa
agcttactcgttgaagcatatcataaagggcagcaagagcttctttatgtagtgcccttt
gttgcaaaagtacttgagagttgtgcaaaaagtcgtgtatttcggccacccaatccatgg
accatggcaattatgaatgttttagccgagctacatcaagagcctgatttaaaattgaac
ttaaaatttgaaatagaggtactttgcaagaatctcagcattgatgttggggaattaaaa
ccgatcatttacttgaaagatcctgaaaaattacgcaatctggattatcagttgtcacat
ccaaacaagaaatcagagccgactagtaatcaacagcaatctcaggggcctatggaagaa
ttggttggatcgacgacgagcggtactatcaatcctcaaactgcgccacctgcggataca
acaccctcattgccagctggtcaacccgagccacgatttaattacatggatatatctgta
acgggcattgctaatatatctcaacacattaccattaacaatcaaatacctctattccaa
acacatcctcatttgaaacaatttattcgccctgctgttgaaagagcaattcaggaatgg
atccatcccgtcgtggataggtccattaaaattgctcttacaaccagcgagcaaattgtg
agaaaagattttgcattggatccagaagaattgcgagtacgtacagcagcgcgtcacatg
gcgcgcaatctaaccgctggcatggctatgattacatgtcgtgaccagatcctggcatcg
attagtacgaatctgaaacaagcgttcctcacagcgttgattggtacgactccgcagcag
aaagaacttgtcgaacttgcggcaaatcaagtcgctactgaaaacatggaacttgcatgt
gcattcgtacaaaagacagctattgagaaagcagtacccgaaatggacaaacgactatta
aacgaagttgagttgcgaaaacttgctcggcaagaagggagaagatactgtgatcctatt
gctaagtatcaagccgagaggatgccagagcagataagactgaaagtcggtggcgtaacg
cctcagcaaatggctgtatatgaagaatttgctagaaatattccaggatttcttccgctt
tccgaacgagatacgcaaacactttttataccgaaacctatttctgaggctcctctcact
gcattcacgcccaactctgcgatggcagcagtcgctacagcacaagtagcagcctatgca
actgtagcagttagcaacgacgaagtaggtgcaatgttggaaaaacttgcgacggaagtt
gaagtcttagcggctgcgatggcacctgcggtacctccacagcagcatgctattcttcac
agtcttctagaatcgatcatacttacgagaagatcaagagatgccaatgcagctatggcg
ttattaaagaaagctgttgaaggtttattagacggacccatctttaatagtggcgtcatc
gactctgataatctaatacaacgttacagagaactacatttacggatcttgaagtgtctt
caagatcaacgcgcgtatggtatgcaatggaccaacaagcacgtgactcgttgtctaatc
gaatgccgggaagactaccgatataactttgaagctgtagactacctcataagatctcac
ttgattagtcttccgcaatacgacatagctgtagcgcaagctgtagaggcgggaaatgct
ttggcaacagtattcgctatgcagttggttcaactttatttgattgatgagagacaggca
actcatgttaccgaaactgacttatttcatacacttgagatattggctcgaatgtcacat
caccgaacaccaccggaaggaatctcactctatagattgacaagtctagtagagtcacta
cgtgccaatcacgatacgaatgccgtattggtagacagagctccagcaggacctacggca
cacattcattctggaatcctgcaggtgagagctcgggattttgacgatccacccggactg
atggataagacagaatatctattacgtgaatgggtgcaaatgcatcataatccacagtac
gcgcgagatcccacgaaagcgtttagcatatttgttcatcaaatgaacattcatggcatc
ctgaagactgacgatctcatcacgagattcttcaagttgagcacacaaatgtgcgtcgac
ctttgctaccgaactctatcagaaactggcttagctccctcgataatacgtgcgaagtgc
ttccattcattggatgcgttcgtacgtctcgtagcacttctggtgaagcactcgggcgat
gctaccaatacccacaccaaaattaatcttttgaataaggtgctgggtatcgtcgccggt
gtgctattacaggaccacgaaatacgtggtgccgatttccaacaattgccgtatcataga
atctttatcatgctgttcttggaattatgcgcgcctgagccggtactggaggccgtgaat
ttccaagttctaactgctttctgtcatactctgcacattttgcgaccagcaaaagcatca
ggtttttgttatgcctggctggagttggtttcgcaccgagtcttcatcggtcgcatgctg
gctattacgcccgggcaaaaatgttgggggatgtacgcgcaacttcttatcgatctattc
aagtacctcgcaccttatcttcgaaatgcggagctagcgaagcctgtgacgagtctgtac
aaagggaccttgcgtgtgttgctcgtactgcttcatgactttccggagttcctttgcgat
tatcattatggattttgcgatgtgataccaccgaattgcatacaaatgagaaatctaatc
ttgagtgcgtttccgagaaatatgcgtctacccgatccgttcacgccgaatctgaaggtt
gatatgctgcaggaaatagcgcagcctccgcgtgttctcaccaatttcgcgtcaacaata
cagccgttgactttcaagaaagaactcgattcttatctgaaggctcgtgcaccggtcacc
tttctatccgaacttcgtagcaatttacaagtgtcgcaagaggccggcgtacgctataac
attcagctgatgaatgctctagtgctctacgtaggcacacaagctatactatttattcgc
agcaaaggtcacgctcctaacatgtctactatcgcacattccgcacacatggatatcttc
cagaatttggccgtagatctggataccgaaggccgatatttgttcctaaacgccatagcg
aatcagttacgatatcctaacagtcacacgcattacttcagttgtacgattctctactta
ttcgcggaagcgaatacggaagcgatacaggaacaaatcacgagggttcttctggaaaga
ctgattgtaaacagaccacatccatggggacttctcatcactttcatcgaactgatcaag
aatccgacgtataaattttggtcacacgagtttgtacattgcgcgccggagattgaaaaa
ttgttcgaatctgtagctaggtcatgtatggtacagaagcaggtacctacaacggaaacg
gagattccagagtga
DBGET
integrated database retrieval system
