Thermococcus sibiricus: TSIB_1349
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Entry
TSIB_1349 CDS
T00928
Name
(GenBank) Probable exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
tsi
Thermococcus sibiricus
Pathway
tsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSIB_1349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsi03019
]
TSIB_1349
Messenger RNA biogenesis [BR:
tsi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TSIB_1349
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TSIB_1349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ACS90401
UniProt:
C6A456
LinkDB
All DBs
Position
complement(1209820..1210560)
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AA seq
246 aa
AA seq
DB search
MGKPEGLKLIDENGYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPRE
IHPKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRT
SIDIFIEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDN
YGEADVPVAIMPIKNDITLLQMDGYLTKEEFLEAVKLAIKGAKAVYQKQREALREKYLKI
VEEVGE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcctgaaggactcaagcttattgatgaaaatgggtatagagttgatggaaga
aagaaatatgaacttagaaaaataaaaatggaagttggagtgctcaaaagtgccgatggt
tctgcctatgttgagtggggtaaaaataagataatggctgcggtttatggtccacgagaa
attcatccaaagcaccttcaaaaaccagatagggccattttgagagtaagatataacatg
gccccatttagtgttgaagagagaaaaaaacccgggccggatagaagaagtgttgagata
agcaaagttataagaggagccttagaaccagcagttattcttgaactatttccgagaact
tcaatagacatctttatagaagttctccaagctgacgctggcacaagagtggctggaatc
acagcagcttctttggctttagccgatgctggaatccctatgaaggatcttgttgcggca
tgtgcagctgggaaaatagatggagagatagtccttgatctcaataaggaagaggataat
tatggagaagcggatgttccagtagctataatgccaataaagaacgatataactctactt
caaatggatggttatctaactaaggaagaattcctcgaagcagtgaaacttgcaataaaa
ggagcaaaggcagtctatcagaagcaaagagaggctttgagagaaaagtatctcaaaata
gtagaagaggtaggtgagtga
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