Thermocoleostomius sinensis: OXH18_24780
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Entry
OXH18_24780 CDS
T09238
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OXH18_24780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsin03021
]
OXH18_24780 (rpoB)
03400 DNA repair and recombination proteins [BR:
tsin03400
]
OXH18_24780 (rpoB)
Enzymes [BR:
tsin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OXH18_24780 (rpoB)
Transcription machinery [BR:
tsin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OXH18_24780 (rpoB)
DNA repair and recombination proteins [BR:
tsin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OXH18_24780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WAL60340
UniProt:
A0A9E8ZBS4
LinkDB
All DBs
Position
complement(5722490..5725813)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSNLTQAAPIFTLPDLVEIQRASFRWFLEEGLIEELDSFSPITDYTGKLELHFLGKDYKL
RRPKYDVDEAKRRDATYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKKEIDKNGRSTFNASLIPNRGAWLKFETDKNDLVWVRIDKTRKLS
AQVLLKALGLSDGEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVSGGQ
QLLDSRFFDPKRYDLGRVGRYKLNKKLRLNVPEATRILTAQDILAAIDYLINLEFDIGSI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDADSLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNTYGFIETPYHRVENRRVRKDIAPIYMTADEEDDLRVAPGD
IPIDENDYILGEQVPVRYRQDFTTTSPEEVDYVAISPVQIISVATSLIPFIEHDDANRAL
MGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVNRLDGEVTHVDANRIRVRSVADP
DVPGSRDVELEYILQKYQRSNQDTCLNQRPIVFAGDRVMAGQILADGSATEGGELALGQN
ILVAYMPWEGYNYEDAILICERLVYDDVYTSIHIEKYEIEARQTKLGPEEITREIPNVGE
DALRQLDETGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLR
VPNGEKGRVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRI
LPREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGSRFKMIPFDEMYGE
EASRLTTHAKLQEASEKTAQPWLFNPENPGKIQVYDGRTGEPFDRPVTIGKAYMLKLVHL
VDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQELLTVKSDDM
QGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDIAAHKLQTQEDGTSRDVEVDLM
ADVGTRRTPSRPTYESISREEMEEIEE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacttaacccaagctgcacctatttttaccctaccagaccttgtggaaattcag
cgagctagcttccgctggttccttgaagaagggctgattgaagagctagacagtttctcg
cctatcactgactatacaggcaagttggaactgcatttcttaggaaaagactataagctt
aggcgtcctaagtatgacgtagatgaagccaaacgtcgagacgcgacctatgcggtgcag
atgtatgtgcctactcgcttgattaataaagaaacaggtgagatcaaggagcaagaagtg
ttcattggggatctccccctcatgaccgatcgcggcacgtttattatcaacggggcggaa
cgagtcatcgtcaatcaaattgttcgtagtcccggtgtttactacaaaaaggaaattgac
aagaatggacgcagcaccttcaacgcgagcttaatccctaaccgaggtgcttggttgaag
tttgaaaccgacaaaaatgatttggtgtgggtgcgcatcgataaaacccgcaaactatca
gcccaagtgttgctcaaagctctcggtctcagtgatggtgagatttttgatgccttgcgc
catccggaatatttccaaaaaacgatcgaaaaagaaggccagttcagcgaagaagaagcc
ctgatggagctatatcgcaaactgcgcccgggtgaacccccaacagtatcaggcggtcaa
caactccttgattcacgtttctttgatcccaagcgttacgatttgggtcgggtcggacga
tacaaactcaacaagaagctgcggctgaatgttccggaagcaactcgcattcttacggcg
caggatatcctagcggcgatcgactacttaatcaatctagagtttgacattggtagcatc
gatgacatcgatcacctaggtaatcgccgagtccgatcggtgggtgagttgctgcaaaat
caggtcagagttggtttgaaccgcttggagcgcattattcgtgaacggatgacggtttcc
gacgccgattcgctcacacccgcttcgttggtcaaccccaagccgctggtggctgcgatt
aaggaattctttgggtcctcacagttgtcgcagtttatggatcaaacgaatccattggcg
gagttgacccataaacgccgtctcagcgcattgggacctggtggtttaacgcgggagcgg
gcaggctttgcagttcgagatattcacccgtcacactacggtcgcatttgcccgatcgaa
acgccggaagggccaaatgccggactgattggctccctcgccacccatgctcgtgtgaat
acgtatgggtttatcgaaactccctatcaccgggtggaaaatcgtcgggttcgcaaggac
attgcgccaatttatatgactgccgacgaagaggacgatctgcgcgtggctccaggcgac
attcccattgatgaaaatgattacatcttgggtgagcaagttcccgttcgctatcgtcag
gacttcaccaccacatcgccggaagaagtagactatgtggcgatttctccggtacaaatc
atctcggtggcgacctcgctaattccgtttattgaacacgatgacgccaaccgcgccttg
atgggatcgaacatgcagcggcaagctgtccccttgctgcgtccagaacgtcctttggtg
ggaacggggctagaagcacaggcggcccgcgactcaggtatggtgattgttaatcggttg
gatggggaagtcacccatgtggatgccaatcgcattcgggttcgatcggtggctgatccc
gatgtgccgggtagtcgggatgttgagttggagtacatcctccagaaatatcagcgctcg
aaccaagatacttgtctcaatcagcgcccgattgttttcgcaggcgatcgagtcatggcc
ggacaaattctggctgatgggtctgcaaccgaaggaggtgagttagccttggggcaaaac
atcttggtagcctatatgccctgggaaggctacaactatgaagatgccatcctcatttgc
gagcgcttggtgtatgacgatgtctacacctccattcacattgaaaaatacgaaattgag
gcacggcaaaccaagttagggcctgaagaaattactcgggaaattcctaacgtcggggaa
gatgccctgcgtcagttggatgaaactggcattatccgcattggcgcttgggtagaagcg
ggcgatatcttggtgggcaaagtaaccccgaaaggagagtctgatcaaccaccagaagag
aagctgctgcgggctatttttggcgaaaaagctagggatgtgcgagataattcgctgcgc
gtgcccaacggtgagaaaggacgtgtggtcgatgtgcgagtcttcacgcgggagcagggc
gatgaactgccgccaggagccaacatggtggtgcgggtgtatgtagcccaaaagcgcaag
attcaggtgggtgacaagatggcaggtcgccacggcaataaggggattatctcccgaatt
ttgccgcgtgaagatatgccctacctgccggatggaaccccggtagacatcgtgctgaat
ccgttgggagttccctctcggatgaacgtgggtcaggtattcgagtgtttgctgggttgg
gcgggtcacaatctgggcagccgcttcaaaatgataccgtttgatgaaatgtacggcgag
gaagcttcccgcctcacaacccacgctaagctgcaagaagccagtgagaaaacggctcaa
ccttggctgttcaatccagagaacccaggcaaaatccaggtttatgatggtcgcacgggg
gaaccgttcgatcgtccagtgacgattggcaaggcatatatgctgaagctggtgcatctc
gtggatgacaagattcatgctcgttcgactggcccgtactcgctggtaacgcaacagccc
ttggggggtaaggcccagcaaggcggtcagcgcttcggtgaaatggaggtgtgggctttg
gaggcctttggggctgcctatattctgcaagaactcttaacggtgaagtctgacgatatg
caagggcgcaatgaggctctcaatgcgatcgttaagggtaaggctattccccgtccagga
acgcctgaatcctttaaggtgctgatgcgtgaattgcagtctctctgtttggatattgct
gcccacaagttgcaaacccaagaagacggcactagccgcgatgtggaagtagatctgatg
gccgatgttggaacgcgacgcacgccatctcgccccacctacgaatctatctctcgtgaa
gagatggaagagattgaggagtaa
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integrated database retrieval system
