Treponema socranskii subsp. buccale: HRI97_02340
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Entry
HRI97_02340 CDS
T08383
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tsk
Treponema socranskii subsp. buccale
Pathway
tsk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRI97_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsk03021
]
HRI97_02340
03400 DNA repair and recombination proteins [BR:
tsk03400
]
HRI97_02340
Enzymes [BR:
tsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRI97_02340
Transcription machinery [BR:
tsk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRI97_02340
DNA repair and recombination proteins [BR:
tsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRI97_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_A_bac
RNA_pol_L_2
HHH_5
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
UTD01985
LinkDB
All DBs
Position
523361..524410
Genome browser
AA seq
349 aa
AA seq
DB search
MARKNLLKGFKKPKGITYTPLETNPNYGKFTAYPFETGFGTTIGNTLRRVLLSSIQGYAV
TSVRITSYGADGVPHVISSEFEAIPNIAEDTLEVINSLKQIRLRLPGDTEQDTILYEFKG
PGTVKSDDFAKEGELEIMTKDALIFTMTDGARVDIEIQVDLGRGYVPAEVNEHYIEIVGT
IPMDAIFTPIVKVKYAIEPCRVGQRNDYDKLVLEIWTDGTISPEDALAEAAKIAEEHFRI
FINFDDSAISGGDDGDEGDKHIREILNTPVDELELSVRSSNCLKNANIRTIGELTKKTED
DITKTRNFGKKSLTEIKEKLQEWGLTLGMTDYSHLKNLNITKKEETDES
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaaaaatctgctcaaaggttttaaaaagccgaaaggcattacttacactccg
ctcgaaacgaatccgaattacggaaagtttacggcgtatccttttgaaacgggattcggg
acgacgatcggcaatacgctccgccgtgtcctgctttcttcgattcagggctatgcggtc
acgtccgtcagaattacatcgtacggtgctgacggtgttccgcacgttatttcaagcgaa
ttcgaagcgattccgaatattgcggaagacacgctggaagttatcaacagcttaaaacag
atacgtttgcgattgcccggcgataccgagcaggacacgattttgtatgagttcaaggga
cccggcacggtcaaaagcgacgactttgccaaagagggcgaacttgaaatcatgacgaag
gatgccctcatctttacgatgacggacggagcacgggtcgatatcgaaattcaagtcgat
ttgggcaggggctatgttccggccgaagtaaacgagcactatatcgaaatcgtcggtacg
attccgatggatgcgatttttactccgatcgtcaaagtaaagtacgcgatcgaaccgtgc
cgcgtcggacaaagaaacgattacgacaagctcgtgctcgaaatctggacggacggaacg
atttctcccgaagacgcgctcgcggaagcggcaaaaatcgccgaagagcatttcagaatt
tttatcaacttcgacgacagtgcgatttccggcggagacgacggcgatgaaggggacaag
cacatccgcgaaatcctcaatacgcccgtagacgaacttgaactttcggtgcgttcgtcg
aactgtctgaaaaatgcgaatatccgcacgatcggcgaacttacgaaaaaaaccgaagac
gatatcacgaaaacgcgaaacttcggcaaaaagagtcttacggaaattaaagaaaagctt
caggaatggggtttgacgctcggcatgaccgattacagtcatctgaagaatttgaatatc
acaaagaaggaagaaacagatgaatcataa
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