Trichinella spiralis: Tsp_00134
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Entry
Tsp_00134 CDS
T01609
Name
(RefSeq) domain protein, SNF2 family
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00134
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
Tsp_00134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
HHH_3
UbiD_C
Motif
Other DBs
NCBI-GeneID:
10901353
NCBI-ProteinID:
XP_003375881
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MESELDIFEKYKFIGSSSYSNLANKVRENGELNANEAKQMTMVAESPVVSDFSVPSETNT
PSKSNALLSDSINRWKEPASSSSKLDLEDDYSDDDSLSDVSSSDHPSTTKKPKLSADEEL
SNLEVSDNEEEIDDQSDISEYKPSSESEEEQWLSKKKAKRLAAERRRHQIAKELQAETKM
IMKQNSNAKQVYSFTKAQSSFDMLRKLRKERKHQQRKQMRRAFLAEELLSEKEGDEEENH
INDEDVKSKSDSPVESVAQKPAKEAPLTVKQFFKRRFVLSSDEEETDDAVACTTSSAVKE
EPVLVEEQQAKHLRRVVYRSDEGEDSDASKQDSYSSSTKDENYSDDSASGSDNDVDEAVK
MDVDTDAKLQFKKPIVLKRRDMEAKCLEFFRSADPSQLAALPRCSERMANAIVELRPFES
YDDMIEKFENAKGFSTNLCIAYIDSLVSQNRLDFLLYKCHTVSSKLEMEVELMMKTDNGL
VKQPNLIAHDLELKPYQLVGLNWLSLIYRQNLGGILADEMGLGKTIQVIAFLAYLKENNF
GGPVFIIVPSSTLDNWLREIQKWCPSLKLLTYYGSQSDRAWIRRQYYNKHVEADVILTTY
TSISSNAEDRHFMKRILADVAIFDEAHMLKNYRTHRYKQLMSIKTKHRILLTGTPLQNSL
IELISLLYFIMPKIFRKLKICLDDLSSLFQLKNISSPEGEQCRIEQAKRIVSPFTLRRLK
SDVLHQLPEKHEKLQFCELTNLQREIYSEIVAECTEILKSRQENCSDAPSSSSGRLTSMI
MKLRKAANHPLLLRWHYKEKKLNKIAKVVAKEKVYKKFQLSEVVEDLMLKSDFEIHKLCC
QHKLSDSAINDSGKLIALDGILAEAKQQGNKVLLFSQFVIVLDVLEEFLNLKQIRYLRLD
GQTPVVERQQLIDMFNSSEDIFIFLLSTRAGGLGINLTSANVIVLYDIDYNPHNDRQAED
RCHRVGQKKDVHVIKLISKDTVDESMLACANKKLELERQITTADSAGSEYIQDIILQQLL
SSQ
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgaattggacatttttgaaaagtataaatttattggttcgtcgagctacagt
aatcttgctaataaggtacgagaaaatggtgaattgaacgctaatgaagcgaaacaaatg
actatggttgctgaaagtcccgttgtatcagatttttctgtaccatctgaaacaaacaca
ccgtcgaaaagcaatgctttactatccgatagcattaatcgttggaaagaacccgcttct
agcagttccaagttggatttggaagatgactacagtgatgatgattcactttctgacgta
tcttcgtcagatcatccgtcaacgacaaaaaagccgaagttatctgctgatgaagaactc
tctaatttggaagtgtctgacaacgaggaagaaatagatgatcaatctgatattagcgag
tacaagccatcgtctgaaagtgaagaagaacaatggttgagtaagaaaaaagcaaaacga
ctggcagctgaacgtcgacgacatcaaattgctaaagaattgcaagcagaaacaaaaatg
atcatgaagcaaaattccaatgctaaacaagtgtacagttttacaaaggctcaaagcagt
tttgatatgttgcgaaaactgcgcaaagaaagaaaacaccagcaaagaaaacaaatgcga
cgagcgtttttagcagaggaacttttgtctgaaaaagaaggagatgaggaggaaaatcat
attaatgacgaagatgttaaatcaaaaagtgatagtccagttgaaagtgttgctcaaaaa
ccggccaaagaagctccgcttactgtaaagcagtttttcaagaggcgttttgttctcagt
tcagatgaagaagaaactgacgatgctgtcgcttgtaccaccagctccgctgtaaaggag
gaacccgtcttggtggaggaacaacaagctaagcatcttcggagagtggtttaccgttcc
gatgaaggggaggacagtgatgcttcgaagcaggattcatattcatcttcgacgaaagat
gaaaattattctgatgacagtgcttctggcagtgataacgatgtggatgaagccgtcaag
atggatgttgataccgatgccaaattgcaattcaaaaagccgatagtattgaaacgacgt
gatatggaggcgaaatgtttggagtttttccgttctgccgacccgtctcagctagctgct
ttaccacgttgttcggaacgaatggcaaacgcaattgttgaacttcgtccatttgaatct
tatgatgatatgattgaaaaatttgaaaacgcaaaaggattttccaccaacttgtgcatt
gcctacattgactcgttggtatctcagaatcggttggattttttgttgtacaaatgtcac
actgtatcgtcgaaattggaaatggaagtggaattgatgatgaaaaccgacaacggtttg
gtgaagcagccgaatttaattgcacacgatttagaactgaaaccgtatcaacttgtcgga
ttgaattggctcagtttgatttaccggcaaaatttgggtggcattttagccgacgaaatg
ggcttgggaaaaactatacaagtaatagcatttttggcttatttgaaagagaacaatttc
ggcggtcctgtcttcattattgtaccatcatctactttggacaactggctgagagaaatt
caaaaatggtgtccttcactgaaattgttaacttattacggaagtcaatccgaccgagct
tggatcagacgacagtattataataagcatgtcgaagcagacgttattttgacaacttac
acttcgatctcatctaatgcggaagatcggcatttcatgaaacgtatactggcggatgtt
gccatttttgacgaagcgcatatgttgaaaaattaccgaacccacagatacaagcaactg
atgtcgattaaaacaaagcacagaattctgctgacgggcacgcctttgcaaaacagtctg
attgagttgatatcgttgctgtactttattatgccgaagatattcagaaagctcaaaatt
tgcttggacgatttatcaagcttgtttcaactgaaaaatatttcttccccagaaggagaa
caatgtcgaattgaacaagcgaaaagaatcgtatcaccatttacacttagacgattgaaa
tcggatgttttgcatcagttgcctgagaagcatgaaaaattgcagttttgtgaattgacc
aatttgcagcgtgaaatttacagtgaaattgtggccgaatgtacggaaattttgaaatct
cgtcaagagaattgttcggacgcaccatcatcatcatcagggcggttgacatcgatgatc
atgaagcttcgtaaagctgctaatcatccgctgttgttgagatggcattacaaggagaaa
aaattgaataaaattgccaaagtggtggccaaagaaaaagtttacaagaaatttcagttg
tctgaagtagtggaggatttgatgctcaaatctgattttgaaattcacaaattatgctgc
cagcacaaattatcggacagtgctatcaacgactctggcaagttgattgctcttgatggc
attttggccgaagccaagcaacagggaaacaaggtgcttctgtttagtcagtttgttatt
gttcttgatgttcttgaagaatttttaaatctgaaacagatccgctatttacgtttggat
ggtcaaacgccggttgttgaaagacaacaattgattgatatgttcaattcatctgaagat
atattcattttcttgctttctactcgtgccggaggtttgggcatcaacctcacctcggcc
aacgttatagtgctttatgatattgattacaatccacacaacgatcgtcaggctgaggat
cgttgtcatcgagttggacagaaaaaagatgttcatgtgattaagctgatttcaaaggat
accgttgatgaaagcatgttagcttgtgcgaataaaaaattggaattagaacgacaaata
actactgccgacagtgcaggatccgaatacattcaagatattattctacagcagttgtta
tcatctcagtga
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