Trichinella spiralis: Tsp_01994
Help
Entry
Tsp_01994 CDS
T01609
Name
(RefSeq) U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_01994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_01994
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
Tsp_01994
Complex C
U5 SnRNP specific factors
Tsp_01994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
Roc
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
10907190
NCBI-ProteinID:
XP_003377781
LinkDB
All DBs
Position
Unknown
AA seq
926 aa
AA seq
DB search
MNGTADAEAIVLHEDKKYYPTALEIYGPDVESVVQEEDTQPLTEPIVKPVRPKKFQAIER
DLPETVYNKEYLADLMDCSNLIRNVALAGHLHHGKTCFVDCLVEQTHPTFVRRDDRDTRY
TDTLNTEYERGVGIKAMPITIVMQDFRNKSYLLNVFDTPGHINFSDEMSAAFRMCDGVVV
FVDAHEGVMLSTERTLKCAVQENLAITLCINKIDRLILELKLPPTDAYLKLRHTIDEVNV
LLKSFSTSHEYETLSPINGNVFFASGKYNICFTLLSFANLYKEIYPDIQPKEFAKRLWGD
IYLNSKTREFQKKAPSGDKPRSFVEFILEPIYKIFSQIVGEVDDTLPRVMSELSIRLTKE
EQKLNIRPLLSLIYRRFFGNFTSFVDVISQHIPSPAENARNKIQLIYSGPMRGQLVDGML
NCNPDGPLMVYTTKNYATPDAASFYVFGRVMGGTLHAQQDVRILGENYSIEDEEDSQTLT
VGRLWIFESRYNVEVNRVPAGNWVLIEGIDEPVVKTSTITDVYLNEEVYIFRPLKFSTQS
VIKIAIEPVNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVIFGTGELYLDCVLHDVRK
VFSEIDIKVADPVVAFCETVVETSSLKCFCETPNKRNKLTMVCEPLERGLAEDIENQLIT
LSMDRKNLSSILQEKYNWDLLAARSIWAFGPDYVGPNILVDDTLPSEVDKSLLNSIRESV
VQGFQWATREGPLCEEPIRNVKFKILDAQISSEVLHRGGGQIIPTARRVAYSAFLMATPR
LMEPYFHIEVIAPADCVSAVYTVLARRRGHVTQDLPIPGSPLYTIKAFIPAIDSFGFETD
LRTHTQGQAFSLSEFHHWQIVPGDPLDRSIYIRPLEPQPATHLAREFMIKTRRRKGLSED
VSVSKFFDDPMLLELAKQDVNISNIR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcactgctgatgctgaagctattgtacttcatgaagacaaaaagtattatccg
actgcacttgaaatttacggaccagatgttgaatcggttgttcaagaagaagatactcaa
ccattaacggagcctattgtaaagccagttcgtccgaaaaaatttcaggctattgaacga
gatttgccggaaacagtttacaacaaggaatatttggcagatcttatggattgctcaaat
ttgattcgaaatgtagcattggcagggcatttgcatcacggaaagacttgctttgtggat
tgtttggtagagcagacgcatccaacttttgttcgtcgagatgatcgagacacgcgctat
acagacacattgaataccgaatatgaacgtggtgttggaattaaagcgatgccaataacc
atcgtaatgcaagattttagaaacaaatcttatttgttgaatgtctttgatacaccgggg
cacatcaatttttccgacgaaatgtctgcagcttttcgtatgtgcgatggagtggttgtt
tttgtagatgcacatgaaggagtaatgctgagcacggaacgaacgttgaaatgtgctgtt
caggaaaatttggcgattactttatgtataaataaaattgatcgtttaatcttggaattg
aaattaccgccgactgatgcttatcttaaactgcgacatactattgatgaagtgaacgtg
cttttgaaatctttttccacatctcacgaatatgagactttgtcaccaatcaatggcaat
gttttctttgctagtggaaagtataatatttgttttacgttgctttcatttgccaattta
tacaaagaaatataccctgatatacagcctaaagaatttgcgaaacgactctggggtgat
atttatttaaattccaaaacgagagagtttcagaaaaaagcaccatcaggcgataagcct
cgcagttttgtggaattcattttggaaccaatttataaaatcttttcccagatagtgggt
gaggtggatgacactttaccacgcgttatgtcagagttgagcattcgactgaccaaagag
gagcaaaagctaaatattcgaccactgttgagtctgatttatcgtcgattttttggaaat
tttacaagttttgttgatgttatatctcagcacataccttcacctgctgagaatgcgaga
aacaagatacagcttatttattcaggtccaatgaggggacagctggtagatggaatgttg
aattgcaacccagatggcccgttgatggtgtacacaacaaaaaattacgcaacaccagat
gcggcaagtttttacgtttttggtcgtgtgatgggtggaacgcttcatgcacagcaggat
gttcgcattcttggtgaaaattattctattgaagatgaagaagactctcaaacgctgact
gttggacgtctatggatttttgaatctagatacaatgtagaagtaaaccgtgttccggca
ggaaattgggttttaattgaaggtatcgacgagccagtagtgaagacatctactattact
gatgtttacttgaatgaagaggtttacatatttcgaccgctgaagtttagtacacagtcg
gtaattaagatcgctatcgagccggtcaacccttcggaattgccgaaaatgttggacggt
ttacgtaaagtgaacaaatcttatcccttgctcagcaccagagttgaagaatctggcgag
catgtgatctttggcactggcgaattatatctcgactgtgtgctgcacgacgtgcggaag
gtgttctcagaaattgatatcaaagttgctgatccagtggtagccttttgcgaaactgtg
gtcgagacgtcttctctgaagtgcttctgcgaaactccaaacaaaaggaataagttgaca
atggtatgtgaaccgttggaaagaggcttggcagaagatattgaaaatcagttaatcaca
ttatcgatggatagaaaaaatttgagcagcattttgcaagaaaaatataattgggatttg
ctggctgctagaagtatttgggcattcggcccggattatgtcggaccgaacattttagtc
gatgacacattaccatccgaggttgataaatctttgttgaacagtatacgtgaatctgtt
gtgcaaggttttcagtgggctacacgtgagggtccgctatgtgaagaacctatacgaaat
gtgaaatttaaaatattggatgcgcaaatttcatctgaagttcttcatcgcggtggtggt
caaataataccaactgctcgacgagtagcttattctgcatttcttatggctacaccacgg
ctaatggaaccgtactttcacattgaagttattgcaccagcggattgtgtttctgccgtc
tatacggtacttgctcgtcgtcgtggtcatgtgactcaagatttgccgattcctggatca
ccgttgtatacgatcaaagcatttataccagcaatagattcatttggctttgaaactgat
ctgagaactcacacacaagggcaagcattttccctttccgaatttcatcattggcagatt
gtacctggcgatcctttggacagaagtatatatattcgcccactggaaccgcagcctgcc
actcatttggctcgagaatttatgattaagacgcgacgtagaaaaggtttgagcgaggat
gtgagtgttagcaaattttttgacgatccaatgttactcgaattggccaaacaagacgtg
aacattagcaacatacgataa
DBGET
integrated database retrieval system
