Trichinella spiralis: Tsp_05375
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Entry
Tsp_05375 CDS
T01609
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03020
RNA polymerase
tsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tsp_05375
09124 Replication and repair
03420 Nucleotide excision repair
Tsp_05375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_05375
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_05375
Enzymes [BR:
tsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tsp_05375
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Tsp_05375
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Tsp_05375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
10913179
NCBI-ProteinID:
XP_003371714
LinkDB
All DBs
Position
Unknown
AA seq
1816 aa
AA seq
DB search
MNEKGKAILLTSDVKSIQFGILSPEECRAMSVCEILYPEINENGKPKLGGLMDPRQGVID
RRSRCQTCAGTIADCPGHFGHLELSKPVYHVGFLPKVLKVLRCVCFYCSRLLVNKNSTKV
EAALAKTKYSCRKRLTTIYDLCKVKRICEGIEKSPEQLAVDRGELVEENGEDSQQAKAPT
GCGRYQPSYKRVGLEVIAEWKKTNEEMQEKKMTLSAERVLEILKGISDEDAITLGFHPKY
SRPDWMIIQVLPVPPLSVRPAVVTFGNARNQLRQNEQTGSATHIVAEDLRLLQYHVATLF
DNEIPGLPKATHKSGRPLKSLKQRLKGKEGRIRGNLMGKRVDFSGRTVITPDPNLALDEL
GVPKTIAQNLTVPELVTPFNLDILQDLVNRGDSHYPGAKYIIRDNGARVDLRYHPRLSDL
HLQIGYTVERHMRDNDIVIFNRQPTLHKMSMMGHRVRVLPWSTFRLNLSVTTPYNADFDG
DEMNLHLPQSQEAKAEILELCMIPRMILTPQANRPVMGIVQDTLTACRKLTKRDVFIDRA
TMFDLLMLLPKWNGKMPIPTIVKPKPLWTGKQLFSMIIPGNVNLIRTHSTHPDDEDNGPY
KWISPGDTKVLIEHGQLLSGILCKKTLGASAGSLMHIVTLELGCYIAASFYSDIQVVVNT
WLLTEGHSIGIGDTIADQATYLEIKDTIHRAKQDVIDVIERAHNDELEATPGNTLRDTFE
NSVNRILNDARDKTGASAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRI
PFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHTMGGREGLIDTAVKTAETG
YIQRRLIKAMESVMVAYDGTVRNATGQLVQLRYGEDGLDGAMVEFQSLPSLKLSDEKFRE
KYRFDLNDERLLRKIFIESIVVDLLASGGVVAELDAEFEQLSQDRRVMRDIFPTGEDKVV
LPCNLRRIVWNAQRIFRIDMREPCELHPLTVIRGVRSLSERLIIVKGDDPISKQAQHNAT
LLFNCMLRSTLSSKRLAEEFKLNHEAFEWILGEVETRFNLAQVQPGEMVGALSALSLGEP
ATQMTLNTFHYAGVSAKNVTLGVPRLKEIINDVLCRIEQTTLKKVALNTALYYDPDPLNT
VIQDDQEWVSIFYEILPPLDLEEISPWVLRIEVDQKRMTDKKMTMQSVAEKINQNFGDDL
RVIYTDDNAERLVFRIRIARGRGSKLEEEAVDRMEDDVFLRIIESNLLTDMTLQGIESIS
KVYMLLPSSDDKKRFVINADGEYQAVSEWILETDGTSLLKVLSDPAVDATRTYSNHICEI
FEVLGIEAVRKAVEKEIKHVISFDGSYVNYRHLALLCDIMTAKGHVDILMEAAAHAEEDL
LLGVSESIMLGQLARLGTGSFDLLLDVQACKQAMEVPMSLVQGAGAKNSFLSMNAMTHHS
MLSPTTNWMAGSTPVYKAVDWSPALPSGVFSPAGGTLENAFSPAYVSGGASIWSPASPSI
PYNDPVSPAPYISPASPSPAAQVNSPAAFSPSSPQYSPSSPQYSPSSPALSVGTGVGTYN
PSSPTYNSGSSSYSPSSPKYSPSSPNYSASNSYLAGSPEYSPTNPSYQLTSPKYSPSSPN
YNPLAMSPAYSPTSPSYSPSSPDYDPTPVGADGSKKPMRYSPTNANYSPSSPAYSPASPK
YSPSLGSPKYSPGSPGYSPSSPGFSMTSPQYSPSSPGYSPSSPRYTPSSPDYVPSSPTYS
PSSPRYAAPSPMYGGVPSSPVYSPSSPNYCLSSPGYAGSGLDYTPEPPIRQAVPCLSLRK
LRMTEIHHRRIRKIKT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagaaaggaaaagctattttattaacatctgatgtgaaatccattcagtttggc
atcttaagcccagaagaatgtcgtgccatgtcggtttgcgaaattttatatccagagatc
aacgaaaatggcaaaccgaaactgggcggtttaatggaccctcgacagggtgtcatcgat
cgcaggagtcgatgtcaaacttgcgcaggcacaattgcggactgtcctggtcactttggt
catttggaactgtcgaagccggtatatcacgtgggttttttgcccaaagtgttgaaagtg
ctccgctgtgtgtgcttttattgttcgcggctgttggtgaataaaaattcgaccaaagtc
gaggcggctttggcgaaaacgaaatacagttgcagaaaacggttgaccaccatttacgat
ttgtgcaaagtgaagcgcatctgcgagggaattgaaaagtcgcccgaacagttggccgtg
gataggggagaattagtcgaagagaatggagaagatagtcagcaggcgaaagcaccgacc
ggatgcggccgttatcaaccgtcgtacaagcgtgtcggcttggaagtgattgccgagtgg
aagaagacgaacgaagagatgcaagagaagaagatgactttgagtgccgagcgagttttg
gaaattttgaaaggtatcagtgatgaggatgcgatcacgttgggatttcatccgaaatat
tctcgaccggattggatgattatccaagtgttgcctgtgccaccgttgtcggttcgaccg
gccgtcgtcacgttcggcaacgctcgaaatcaattgagacaaaatgagcagaccggctcg
gcgactcatatagttgccgaagatcttcgtctgttgcagtatcacgtggcgacattgttt
gacaacgagatcccaggcttgccgaaagcgacgcacaaatctggccgaccattgaaatcg
ttgaaacaacgcctgaaaggcaaagaaggtcgtataaggggcaatttgatgggaaagcgt
gtcgacttttccggtcgaaccgtgatcacaccagatccgaacctggccctcgacgaactc
ggcgtgccgaaaaccattgctcagaatttgaccgttccagaattggtcactccgttcaac
ttggacatattgcaagatttggtcaatcgtggtgatagtcattatccgggcgccaagtac
atcattcgtgacaacggtgctcgtgttgatcttcgttaccatccccgactgtcggatttg
cacttgcaaattggttacacagtcgagcgccacatgcgtgacaatgatattgtaattttc
aatcgtcagccaactttgcacaagatgtccatgatgggtcatcgggttcgtgtacttcct
tggtcgacatttcgtttgaatttgagtgttactacaccgtataacgcagattttgacggc
gatgaaatgaacttgcatttgccgcagtctcaggaagcgaaagcagaaattcttgaactg
tgcatgattcctcggatgattttaacaccgcaagcgaatcgtccagtcatgggaattgtt
caagatactttgaccgcatgcagaaagttgaccaaacgggatgtatttattgatagggcg
acaatgttcgatctgcttatgcttttgccaaagtggaacggcaaaatgccaataccaaca
atagtgaaaccgaagccactttggactggcaagcagttgttttccatgatcataccgggc
aatgtgaatttaatacgaacgcattccacgcatccggacgacgaagacaacggtccgtac
aaatggatatctcccggcgacacgaaagtcttaattgaacatggccaactgttgagcggt
attttgtgcaagaaaacgctcggcgccagtgctgggagcttgatgcacatcgtgacgttg
gaactgggttgctacatcgcggcgtcgttctacagcgacatccaagtggtcgtcaacact
tggctactgaccgaaggccattcaatcggtattggcgacaccattgctgaccaggccacc
tatttggagatcaaggataccatccacagggcgaagcaagatgtgatcgacgtgatcgaa
cgtgctcataatgacgaactggaagccacgccgggaaacaccctacgcgacactttcgag
aacagtgtcaatcgaatattgaacgacgcccgtgacaaaaccggtgcctcggcacagcgg
tcgttgtcggaattcaacaatttcaaagctatggtggtagccggcagcaaggggtcgaaa
atcaacatttcgcaagtgatagcctgcgttgggcagcagaacgtcgaaggcaagcgcatc
ccgttcggcttccgccatcgcacgttgcctcatttcatcaaagacgactacggacccgag
agtcggggtttcgttgaaaacagctatttggccggcttgacaccgtctgaatttttcttc
cacacaatgggcggtcgagaaggtctaatcgatactgcggttaaaaccgctgaaactggc
tatattcaacgtcgactgatcaaagctatggaatcggtaatggttgcctacgacggtacg
gtgcgaaatgcgacggggcagttggtgcaactgcgttacggcgaagatggattggacggt
gcgatggtggaatttcaatcgttgccttcgttgaaattgagtgacgaaaaattccgagaa
aaatatcggttcgatttaaatgacgaacgtctcctgcgtaaaatattcatcgaatcgatt
gttgtggatttgttggcatccggtggagtggttgcagagttggatgctgaatttgagcaa
ctgtcccaggacaggcgcgtcatgagagatatttttccaactggcgaagataaagttgta
ttgccgtgcaatttgcgtcgtattgtttggaatgcgcagagaatatttcgaatcgacatg
cgcgagccgtgcgaattgcatccattgaccgtaattcgaggagtgcgtagtttgagtgaa
cggttgatcattgtcaaaggcgacgatccgatttccaagcaagcacagcacaacgccacg
ttgttgttcaactgcatgttgcggagcacgttgtcgtcgaaacggctggcagaagagttc
aaattgaaccacgaagcattcgaatggattttgggtgaggtggagacacggttcaatctt
gctcaggtgcaaccgggcgagatggtgggcgcgttgtcggcgctgtcgttgggcgagccg
gcgacgcagatgacgctgaacactttccattatgcgggtgtttcggcgaaaaacgtcacc
ctcggtgtacctcgactgaaggagatcatcaacgatgtgctttgtcgtattgagcagacc
acgttgaagaaggtcgctttgaatactgcattgtattatgatcctgatcctttgaatacg
gtcattcaggacgaccaagaatgggttagcatcttttatgagatattaccgccgctcgat
ttggaggaaatctctccttgggtgcttcgtattgaagttgatcaaaagagaatgacggat
aagaagatgacaatgcagtctgttgcggagaaaattaatcaaaactttggcgatgatttg
cgtgtaatttacacggatgacaatgcagaacgattggtgttcagaattcgaattgctcgt
ggaagaggtagcaaactagaagaagaagcggttgatcgtatggaggacgacgttttcttg
cgtattatcgaatcgaacctgctcaccgacatgactttgcaaggcattgagtcaatatcg
aaagtttacatgctgttacccagctcggatgacaaaaagcgctttgtgatcaacgcagac
ggcgaatatcaggctgtgtctgagtggatattggaaactgacggcactagtttgctgaaa
gtgctcagcgatccggccgtcgacgctacccgtacatacagcaatcatatttgtgaaatc
tttgaagtacttggtattgaagcggtgcgtaaagcggtagaaaaagagatcaagcatgtg
atttcatttgacggaagttatgtcaattacagacatttggcattgctttgcgacatcatg
acagcgaaaggtcacgttgatatattgatggaagcggctgcgcacgctgaagaggatctg
ctgcttggagtgtcggaaagtatcatgcttggccagttggcccgtctgggcaccgggtcg
tttgatttgttgttggacgtgcaagcttgcaagcaagcgatggaagtgccgatgagtttg
gtgcaaggcgccggggcgaaaaacagttttctgtcgatgaacgcgatgactcatcatagt
atgttgtcgccgactacaaattggatggctggttcgacgccagtgtacaaagctgttgat
tggagtccagctttgccgagcggagtgttttcaccggccggtggcactttggagaacgct
ttcagtccggcttatgttagcggtggtgcaagcatctggtcgccggcctcgccttcgata
ccctacaatgatccagtttctcctgctccgtatatttcgccggcaagtccatctccagcc
gctcaagttaatagtccggccgctttttcaccttcatcacctcagtacagtccatcctca
ccccagtattctccgtcatcgccagcgttgagtgttggcacaggggttggcacgtacaat
ccatcaagtcccacttacaattctggctcgtcgtcttacagcccatcctcaccgaaatat
tcaccatcgagtcccaattattctgcctcgaacagttacttagcaggttcgcccgaatat
agtcctaccaatccaagttatcaacttacaagtccaaagtatagcccaagttcaccaaat
tataatccattggcaatgtcaccggcttattcgccgacaagtccaagttattcaccatcg
agtcctgattatgatccaacaccggttggtgccgacggttcgaaaaaaccaatgcgctat
agtcccacgaatgcgaattattcaccatcgagtccggcttattcgccggccagtccgaag
tacagtccgtcgttgggtagtccgaaatattcgccgggcagtcctggctattctccgtca
agtcctggtttttcaatgacaagtccccagtattcgcccagcagccctggctattctccg
tcaagtccacggtacacgccttcatcgccggattatgttccttcgtcgccgacgtacagt
ccgtcgtcgccacgttacgcagccccgtcaccaatgtacggtggtgtgccgtcgagtcca
gtctattctccgtcaagtccgaactattgcctctcgtcaccaggctatgcgggatccggc
ctggattatacacccgaaccccctattcgccaagcagtcccatgtttgagtcttcgaaaa
ctgcgaatgacagagattcatcatcgtcgaataaggaagattaaaacgtag
DBGET
integrated database retrieval system
