Thermosynechococcus sichuanensis: D3A95_05200
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Entry
D3A95_05200 CDS
T10350
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsq Thermosynechococcus sichuanensis
Pathway
tsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3A95_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsq03019
]
D3A95_05200
03009 Ribosome biogenesis [BR:
tsq03009
]
D3A95_05200
Enzymes [BR:
tsq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D3A95_05200
Messenger RNA biogenesis [BR:
tsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D3A95_05200
Ribosome biogenesis [BR:
tsq03009
]
Prokaryotic type
rRNA processing factors
D3A95_05200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AXY67750
UniProt:
A0A3B7MIN6
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All DBs
Position
1060662..1062650
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AA seq
662 aa
AA seq
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MPKQIIIAEEHRLAAVFAEDQIQELIVATGTHQVGDIYLGVVENVLPGIDAAFVNLGDAS
RNGFIHVTDLGPLRLKRTAGAITELLAPQQKVLVQVMKEPTGTKGPRLTGNISLPGRYLV
LMPYGRGVNLSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVSEEAILEDLELLQR
QWETIQQQAASSRPPQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDGVKRVKQHLKNWNV
NKPVGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGS
FTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQLLEHFSKALR
ADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLGHLVHLPGEPEDSPGEIV
ERSPMPRPPEPRRSLELRSEPNGFASSSLESQLINHPDYQAVGGIRPRSSRSSHPPAPRS
PRRTPENGNGRKVITTPTETAPPPVVKVESRPSRPARPSRSEPAEVITVTMTDQEQAVYA
EMGISPLVLYPEEVKNPRGTIVMVARPGQDPIPLPQKTARPVSEGLAEDVPETADEPPAP
VVSTINVEPIPATALLKTSEPEVTTETEAGGETSTPEASVPAGRRRRRRVTSSEQLSLDA
NA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcaaatcattattgccgaggaacatcggctagcggcggtctttgccgaagat
caaattcaagaattgattgtggccacgggcacccatcaagtgggggacatctaccttggc
gtggttgaaaatgtcctaccgggcattgatgctgcctttgtcaacttgggggatgcctcc
cgcaatggctttatccatgtcactgaccttggcccattgcgtctgaagcgaactgctggg
gcaattacggaattgctcgcaccgcagcaaaaagtgctggtgcaggtgatgaaggaaccc
acgggcaccaaagggccacggctgacaggaaatatttccttgcctgggcgctatcttgtg
ctcatgccctatggtcggggggtgaatctatcgcgccggattaccaatgaagctgagcgg
catcgcctacgcgccttgggcattttggtcaaacccgctggcatggggctactggtgcgc
acagaggctgaaggggtctccgaagaggccattcttgaggatctagaactcctgcaacgg
cagtgggaaacgatccaacagcaggcggcctccagccgtcctccccagcttctggggcgc
gatgatgactttatccaaaaagtgttgcgggatgtctatagcagtgatgtcaaccgcatt
gtggtggatactccggatggggttaaacgggtcaaacagcacctaaaaaactggaatgtc
aataagccggtgggggttctcattgactatcaccaagaacccattcccattttggattac
ttccgggtgaatgccgccatccgtgaagcccttaaaccccgtgtggatttgccctccggt
ggctatatcatcattcaaccgacagaggcactgacggtcattgatgtcaactccggttca
ttcactagctcagccacctcgcgggaaacggtgctgtggacaaactgcgaagcggccacg
gaaattgctcgccaactgcgactccgcaatattgctggcgtgatcattgtggattttatt
gacatggattcgcgccgtgaccagttgcaactgctggagcactttagtaaagccctgcgt
gccgataaagcccgtccccaaattgctcaactctcagaactggggctggtggaactgacc
cgcaaacgccaagggcaaaatatttacgaactctttggccgtccctgtagtgcctgtggt
ggcttgggtcacttggtgcatttacccggtgaaccggaggatagccccggcgaaattgtt
gagcgatcgcccatgccgcgtccaccggagccacgccgcagtttagaactccgcagtgaa
cccaatggctttgccagtagcagcttagagagtcagctcattaaccaccctgactaccaa
gcagtgggggggattcgtccccgttcctcccgtagtagtcacccgccagcgccccgcagt
cctcgccgtacccctgaaaatggcaatggccgtaaggtgattaccacacctacggaaacg
gcgccaccgccggtggttaaagtggagagccgtccgtcccgccctgcccgtccgagccgc
tctgaaccagcggaagtgattaccgtaacaatgacggaccaagagcaggcggtctatgcg
gaaatgggaatttccccccttgtgctgtaccctgaagaggtgaaaaatcctcggggaacc
attgttatggtggcacgccccggccaagaccccatacccctgccccagaaaaccgcgcga
ccggtcagtgagggactggctgaagatgtcccagagactgctgatgagccacccgcccct
gtggtcagcacaattaatgtcgagccgattcctgccaccgcgctgctcaagaccagtgag
ccagaagtcacgaccgagactgaagccggcggagaaacatccaccccagaggcctctgtg
cctgcaggtcggcggcggcggcgccgggtgactagtagcgagcaactctcccttgatgcc
aatgcctag
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