Thamnophis sirtalis (common garter snake): 106545109
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Entry
106545109 CDS
T06107
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106545109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106545109
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106545109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup192
Nup188_SH3-like
FYVE_2
Motif
Other DBs
NCBI-GeneID:
106545109
NCBI-ProteinID:
XP_013917047
UniProt:
A0A6I9XSJ4
LinkDB
All DBs
Position
Unknown
AA seq
1437 aa
AA seq
DB search
MFKDQGFGTRQTNRHLVDESMDSLVDRIGYFSALILVEGMEIDSLHERLLDDRKEEHKFA
GNGQIRQEIDRLLLTLGDVPHHAPVLLAWALLRHTLSADGSSGVIRRMGSTAIQMNVFQY
LTKMLRAISSEGNCISSTACMCIYGLLSFVLTSLELHTLGNQQDIIDTACEVLAASSIPP
LFWKTEPTAGLGIILDSVCGMFPHLLSPLLQLLTALVSDKSTAKKVYTFLDKMSFYIELY
KHKPADVISHEDGTLWRKQTPKLLYPLGTGQTNLRIPQGTIGQVMLDDRAYLVRWEYSYS
SWTLFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLL
HRLTTVISPPVDIIASCVKCLTVLASRMPAKVWTDLHHTGFLPFVANPVSNMSHLISAEG
MNAGGYGNLLMGIEQPQGEYGVTISFLNLVMTLVRGQLGSTQSQGLVPCIVFVLKEMLPN
YHKWRYNSHGVREKIGYLILQLIHAILNLCPEMDPRSSAPSLQSLCIFSLANTEAGQAVI
SIMGIGVDTIDMVMASQSCSDGESQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEHAL
TQHGAHRNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDASAIRDAF
LTRLQSRIEDMRIKVMILDFLTVAVETQPGLIELFLNLEVKDGSEGCKEFSLGEWSCLHV
VLELIDSKQQERYWCPPLLQRATVAFLHALWQDRRDSAMLVLRNKPKFWGNLTNPLFGIL
PPPSETSELSVLETCALIMKIICLEIYSVVKGSLDQSLKDTLKKFSAEKRFAYWSGYVKS
LAFHVAETEGSRCASVTEYQMLISAWRMLLVVSTSHADIVNLTDTEVQQLFLDVLSGTKA
LVRIPILETCCCSALKPLFASFFSLPAFSPYSASKLGSAEKIINSLTQILDGVLQADQQM
MEKTKAKVFSALVTVLQMKEMKASEIPQYSQLVLSVCETLQEEFIALFDHTRHCLTSGDS
LEDKDSMETDDISRHRQKDQRDGVCVLGLHLAKELCEVDEEGDGWLQVTWSLPLLPTLCT
TLEVSLRLKQNLHFTEASLHLLLTLAKTQQGAAAVATAGILHSICLPLLSVYQLSSNGGG
QVPVSSRRSLDGPSWPGVYRLSVSLMERLLKTLRYNFLTDALDFVGVHQERILQCLNAVR
TVQSLACLEEADHTVGFLLQLSNFMKEWQFHLPQLLRDVQVWELPCLPIKTANRTGPAPC
AFRFCFLPQSLDLAEYSILFMLSFTTPAFDSEAPPSFGTLLATINVALNMLGELDKKKDP
FSLAAGPSPQQEGNKTLKPLLMFTMENCFYLLISQAVRYLKDPAVHSRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPAGGLLPSPQGKPSSKLGPEGQEPLFQLVQTFVRHVQR
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaggaccagggcttcggcacccggcagaccaaccggcacctggtggatgaaagc
atggactccctagtggatcggattgggtacttcagtgctctaattctagtggaaggcatg
gaaatcgactccttacatgaacgtttattggatgataggaaggaagaacataagtttgct
ggcaatggacagatccgccaggagatagaccgcctgctgctgaccctgggggacgtcccc
catcacgcccccgtcctcttggcctgggccttactccggcacacgctgagcgctgatggg
tcgagcggggtgatccggcggatggggagcaccgccatccaaatgaacgtcttccagtat
ttgaccaagatgctccgagccataagttctgaaggaaactgtatttccagcaccgcctgc
atgtgtatctacgggctcctctccttcgtgctgacttctctggagctgcacacgctcggc
aaccagcaggacataatcgacacagcgtgtgaagttttggctgcttccagcattcctccc
ttattctggaaaacggaaccaacagcaggtctgggcattattttggatagcgtgtgtggc
atgtttccacacctcctctctcctcttcttcagttactcactgcacttgtttcagacaag
tcgacggcaaagaaggtttacacgtttttggacaagatgtccttctatatcgagctttat
aagcacaaaccagcagatgtcatctctcacgaagacgggaccctctggaggaagcagacg
cctaaattgctgtaccccctcggtacgggtcaaaccaaccttcggatccctcaagggaca
attgggcaggtgatgctggatgaccgggcctacttggtacgctgggagtattcttacagc
agctggacactcttcacctgcgaaattgagatgctgttgcatgtggtgtcgacggctgat
gtcatccagcattgccaaagggttaagcccatcatcgacctggttcacaaagtcatcagc
accgatgtgtccattgccgattgcctcttgcccatcacctcccggatctacatgctgctt
cacaggttaaccactgtgatttctcccccggtcgacatcattgcctcttgtgtcaaatgc
ttaacagtgctggcttcccggatgcctgccaaggtctggactgatcttcatcacacgggc
tttttaccttttgtggcaaatccggtttctaatatgagtcacctgatcagtgcagaggga
atgaacgctggaggctacgggaatctgctgatgggcattgagcagccccaaggcgaatac
ggcgtgacaatctccttcctgaatttagtcatgacgctagtccgggggcagctgggcagc
acccagagccagggcctggtgccgtgcatcgtgtttgtcctgaaggagatgctgccaaat
tatcacaagtggcgctataactcccatggagtgagagaaaaaataggataccttatcctc
cagctgatccatgcaattttgaacctgtgccctgaaatggatcctcgtagcagtgccccc
agcctccagtccctttgcatcttcagcctggccaatacggaagcaggccaggcggtcatc
agcatcatgggcatcggagtggacaccatcgatatggtgatggccagccagtcctgcagc
gatggggagtctcagggccagctcctgatccagacggtgaaactggcgttctccgtcacc
aacaacgtcatccggttgaagcctccctccagcgttgtgtcgcctctggaacacgccctg
actcagcacggggcccaccggaacaatctgatcgctgtcttagccaagtacatctaccat
aaacatgacccagccttgccacgactagccatccagctcctgaagcggctggcaacggtg
gctccgatgtctgtctacgcctgcctgggcagtgacgcctctgccattcgcgatgccttc
ctgacccgcttgcagagcagaattgaggacatgcgcatcaaagtcatgatcctcgacttc
ctcacggtggccgtggaaacccagccgggcctgatcgaattgtttcttaacctggaagtg
aaagacgggagcgagggctgcaaggagttcagcttaggggaatggagctgccttcacgtg
gtcctggagctgattgactcaaaacagcaggagcgctattggtgtccccccctcctgcaa
cgagccaccgttgcttttctccacgccctgtggcaggaccgccgagacagcgccatgctg
gtcctcaggaacaagccaaagttttggggaaacttaaccaacccgttgtttggaatcctt
cctccaccgtccgaaacatctgagctgagtgtcttggaaacctgtgccttgataatgaaa
atcatttgcctggagatttattccgtggtcaaggggtctctggaccagtccttgaaggac
acactcaagaagttttcagccgagaagcgctttgcttactggtcgggctacgtgaagtcc
ctggccttccacgtggccgagacggagggcagccgctgcgcttccgtgaccgagtaccag
atgctgatctccgcttggcgaatgctgcttgtggtttccaccagccacgccgatatcgtg
aacttgaccgacacggaggttcagcagctgttcctggatgtcttgagtgggaccaaggct
ttggtgagaattcccattttagaaacctgttgctgttcagccctcaaacctctgtttgct
tctttcttctccctccctgctttttctccctactctgccagcaagttgggctcggcggag
aaaatcatcaactccttgacgcagatcctggacggagtccttcaggctgaccagcagatg
atggagaagaccaaggccaaggtcttctccgcactcgtcaccgtcctgcagatgaaagaa
atgaaagcaagcgaaatccctcagtactcgcagctggtgctgagcgtgtgtgagaccctt
caggaggaattcatcgccctcttcgaccacacccggcactgcttgacttcgggagattcc
ctggaggacaaagacagcatggagacggacgacatctcccggcacaggcagaaggaccag
cgagacggggtgtgcgtgctgggcctccacttggccaaggagctgtgcgaagtggacgaa
gagggggacggctggctgcaagtgacatggagcctcccgctgctccccaccctctgcacc
accttggaggtcagcctgaggctgaagcagaatttgcacttcaccgaagcctcactgcac
ctgctgctcaccttggccaagacccagcagggggcagcggccgtggccacagccggcatc
cttcacagcatctgcttgcccctcctgagcgtctaccagctgagcagcaatggaggggga
caggtccccgtttcctctcggcggtctctggacggcccatcctggcccggtgtctaccgc
ctctccgtatcgctgatggagcgcctgctgaagaccctccggtacaacttcctgaccgac
gccttggactttgtgggtgtccatcaggagaggatccttcagtgcttaaacgccgttcgg
acggtgcagagcctggcctgcctggaagaagcagatcacaccgtggggttcctcctccag
ctgtccaacttcatgaaggagtggcagttccacctgccccagctcctcagggacgtccag
gtatgggaactgccttgcttacccataaaaacagcaaacaggactggtcctgctccgtgt
gcatttcggttctgcttcctcccgcagtccctggacctggcagagtacagcatccttttc
atgctcagctttaccactccggccttcgactcggaggcgcccccctcttttgggaccctg
ctggccaccatcaatgtggccctgaacatgttgggggagttggataagaagaaggacccc
ttcagtctggctgcaggaccctccccccagcaggaagggaacaagacactcaagcccctc
ctgatgttcaccatggaaaactgcttctaccttctcatctctcaagcggttcggtatttg
aaggatccggcggtgcactcgcgagacaaacagcgcatgaaacaggagctcagctcagag
ctgagcacgctgctctccagcctgtctcgctatttccgccgcggtggcccttcctcgcct
gccgggggcctcctgccctccccccagggaaaaccctcctccaagctggggccggaaggc
caggagcccctcttccagctggtccagaccttcgtccgacacgtgcaaagataa
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integrated database retrieval system
