Thamnophis sirtalis (common garter snake): 106546482
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Entry
106546482 CDS
T06107
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04518
Integrin signaling
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106546482
04518 Integrin signaling
106546482
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106546482
09142 Cell motility
04820 Cytoskeleton in muscle cells
106546482
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106546482
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106546482
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106546482
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106546482
Hyaluronan
Extracellular matrix or blood plasma proteins
106546482
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
DUF1194
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
106546482
NCBI-ProteinID:
XP_013918834
UniProt:
A0A6I9XS00
LinkDB
All DBs
Position
Unknown
AA seq
1602 aa
AA seq
DB search
MAQVYQQFPVDGTMVEAQIIVTHRGAFKCPQQALSVLALETPEAVAYERFQELPPSEAAE
QTAKDWNIAQNLKMLLILIFIITGTQTFMAQKPVSKPVDLIFLVSSSNTSFPHIKTFIST
AVKFLPFDPNEYRIALAQYSDQVYSEFQLDTYKEKNPMLNHIKRKMVLRTGLLKTGSALY
RVQEIDYWKPILGEGRSKILIVITSQQSKDDIKNAGWLLQKAGVKIISIGVEEASIDELR
LLATKPFYFFFPKIEELSLFAQNISRIVAELYRIQNAMLCFLLIIACHSDGVADLVFIVD
AGTSQTSFEKMQLFLENLVSSLDVNQKCIRIGLVTFSTKPQVISSLQMTTDGIHVVQNIQ
GLSPKPGKANIGTAINFTRQKVFSVSSGSRKAQGVEQIALLISHRPSEEDVRDAAKLLRR
AGVTVFAIGIKEANITQLTQIAAYPPPQYVTQLSTFSQLLNKSLDFQKKIMTQIQEKLYM
DTKRTELLKRGCVDMEEADIYFLIDGSSNLDYFDFVDLKLFLKEIIRLFAIGPNKVRIGV
IQYAETSEVEFDLEEYGKTNDILKAIDNIRQIGGTPPYTGAALTIIQSLFRKLQSQPSRT
VPCHLIVLLDQISKDNVEEPARRLRNEKINLYAIGVRHTNASQIYTIADSNNRAYFVNDF
ASLKYIKNDVVREICATEVCKEKKTDIVFLVDSSRSSATEDFEKMKNFMRLLVDKSDIGP
ETVHIGVVQFSDKCQEEFQLNQYFTKPDINNAIGRMSLMGQSTFTGEALQFVSNYFKPAK
GSRLYVKKVLILITNGEAQDEVKNHAEALREENIIIYSVGLFQANKMQLMEISGKPEMVY
YVEDFEVLKYLKNEILFEICSSSDECRRIERLDIIFVIDGSGSIDPKEYDIMKDFMITLV
KKSDVGYDRVQFGAVKYSAEPETFFYLNQFNTKSAIIEAIQNDKPIGETTYTAKALRHSE
SLFSKKHGSRKHIPQVIIVITDGDSHDAAELEEVSKNLRARGIVIYAIGIERAKPDELLT
MAGSEDRYFYVNTFEGLKNLYPRLSDNICGVSKSECGIPADLVFLIDGSNSISDSDFTKM
KIFLQDVIHPFDTTHNVQVGIAQYSDRYQEEFSLNIFSRKSELENQIRHIQQMEGLQTYI
GAALKKVKLYFTPEGGSRINEKIQQILLVITDGRSHDRVVQAAEDLRKKGVDIYAIGVGR
IDHLQLSQIAGSSDRKYTVDNFSELKVIKKRLVDDICEQEDKTSCFVDIVVGIEVSSQNQ
GDHVFLGQPQLEFYLPQITSALTSLTSLSCNAGSQTQTSVALKIKNTDPLVASKFQIDSE
KLINSLVGTTITNASHLTAEYLDSLWETFQIKSANRRKVLLIFTDGLDDRIEILKDKSEE
LKKKGLDALITVVLEGASNFDDLQFIEFGKGYGYKIQLNIGMRDIASQLFKYMNNIAERT
CCCIYCKCIGEEGEPGEQGKYGMEGSQGFEGSPGHLGDEGEPGPRGLPGSDGDKGYSGCQ
GNRGPKGQRGIIGEKGSNGEKGFDGINGELGSPGLPGFKGEKGDPGNQGSPGVKGIHGEC
GKNGFQGDLGERGPFGPTGDPGSKGTKVRTKERKIYIDFSYE
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggtataccaacaatttcctgtagatggcactatggtagaggcccaaatcatt
gtgacgcataggggtgcattcaaatgcccgcagcaagctctgagcgtattggctctagaa
actccagaagctgtggcctatgaaagattccaggagcttccaccaagcgaagctgcagag
caaacagctaaggattggaacattgctcaaaatttgaaaatgctgttgatattaattttc
ataattactgggacacagactttcatggctcagaaaccagtttccaagcctgttgatctt
atatttttggtttccagtagtaatacgtcttttccgcatattaaaacatttattagtaca
gcagtcaaatttttaccttttgaccctaatgaatatcgcattgcgcttgctcaatattct
gatcaagtatatagtgaattccagctggatacctacaaagagaagaatccaatgttaaat
catatcaaaaggaaaatggtgcttagaactggcttattaaaaactggcagtgctctctac
agagtacaggagattgattactggaaaccaattcttggagaaggaaggtccaagattttg
atagtgataacatctcaacaatctaaagatgatataaaaaatgctggttggctgctgcag
aaagctggagtaaagatcatttcaattggggtggaagaggcctctattgatgaactacgt
ctgttggctacaaagccattttatttcttctttcctaaaatagaagaacttagtttattt
gctcagaatatttctaggattgtggctgaactatatagaatccaaaatgcaatgttgtgt
ttccttcttattatagcatgtcatagtgatggagttgctgatttagtatttatagtggat
gcaggcacgtcacaaacaagcttcgaaaagatgcagctctttttagaaaacctggtgtct
tctttggatgtgaatcagaaatgcataagaataggcctagtgactttcagcactaagccc
caggtgatatcttcactgcagatgacaactgatggaattcacgttgtgcaaaacatccag
ggcctatcacctaagccaggaaaagctaacataggtaccgccattaattttacaagacag
aaagtcttcagtgtcagttctggaagtaggaaggctcaaggggtagaacaaatagccctt
ctgattagtcatagaccttcagaagaggatgtgagagatgcagctaaattacttagaaga
gctggtgtgactgtatttgccattggcattaaggaggccaatattacccaactaacccag
attgctgcttacccaccaccacagtacgttactcagctaagtacattttctcagttgctt
aacaaatctctggattttcagaagaaaattatgacacaaatacaggagaaactctacatg
gataccaaaagaacggaacttctgaaaagaggatgtgtggatatggaagaagctgatatt
tattttctcattgatggttcatcaaacctcgattattttgactttgtggatcttaaatta
tttttgaaagaaattattagattgtttgccatcggtccaaataaagtccgtattggagtt
atacagtatgcagaaaccagtgaggtggaatttgatcttgaggaatatggcaaaacaaat
gatatactgaaagccattgataacattcgtcaaattggtgggactcccccctacaccgga
gcagctttgacaatcattcaatccttgtttaggaaattgcaaagtcagccttccagaaca
gtaccctgccatctaattgtgttattagaccagatatcaaaagacaatgtagaggaacca
gccaggagattgaggaatgagaaaataaatctttatgccattggtgtaaggcatacaaat
gcatctcagatctacacaattgcagattcaaataaccgggcttattttgtgaatgatttt
gcctctttgaagtacataaagaatgatgttgttcgggagatctgtgctacagaagtctgc
aaagaaaagaaaacagatattgtgtttctggtggatagctctagaagcagtgcgactgag
gactttgaaaaaatgaagaatttcatgaggttgctggtggacaaatctgatattggtcca
gagacagtgcacattggagttgtccaattcagtgataaatgccaagaagaatttcagcta
aatcaatacttcacaaaaccagatatcaacaatgctattgggagaatgtctcttatggga
cagagcacattcactggagaagcactccaatttgtgtccaattatttcaaacctgctaaa
ggatcacggctatatgtcaagaaagttcttattcttataactaatggagaagcacaggat
gaggtaaaaaaccatgcagaagctttgagagaggaaaatataatcatctactcagtaggg
ctgttccaggctaacaaaatgcagctgatggagatcagtggaaagcctgagatggtgtat
tatgtagaagattttgaggttctaaagtatttaaaaaatgagatcctctttgaaatatgt
agctcttctgatgaatgccgaagaatagaacgtctagatattatttttgtcattgatggt
tctggaagtatagatcccaaagaatatgatattatgaaagatttcatgataaccttggtg
aaaaaatctgatgttggctacgatcgagttcagtttggagcagtcaaatattctgcagag
ccagaaacatttttctatctcaaccagttcaataccaaatcggcaatcattgaggctatt
cagaatgataaacctataggagaaacaacatacacagccaaggcattgcgtcattcagaa
agtcttttctccaagaagcatgggagccgcaaacacatccctcaagttatcatagtgata
actgatggggattctcatgatgcagcagagcttgaggaagtatcgaagaacctcagggct
cgtgggattgtgatctatgctattgggatagaaagagccaagccagatgaacttttgacc
atggcaggatctgaagacagatatttctatgtaaatacatttgaaggcctgaaaaatctc
tatcccagattatctgataatatttgtggtgtttcaaagtcagaatgtggaattccagca
gatctggtattcctgattgatggatctaatagtataagtgacagtgatttcactaagatg
aagatttttttacaagatgtaattcatccgtttgataccacccacaatgtgcaagttggt
attgctcagtatagtgacagataccaagaagagttcagtctcaacattttctcacggaaa
tcagaacttgaaaatcaaatcagacacattcaacagatggaaggacttcagacatatatt
ggtgctgcccttaagaaagtgaagctctactttactccagaaggtggcagcagaataaat
gaaaagatccagcagattttgctggtgatcactgatggaaggtcacatgatagagttgtt
caagcagcagaagatctgagaaagaaaggcgttgacatatatgccataggagtagggaga
attgaccatttgcagcttagtcagatagctggctcctcagacagaaaatacacagttgat
aatttcagcgaactgaaagtaattaaaaaaagactagttgacgatatttgtgagcaagaa
gataaaacatcatgcttcgtggatattgttgtgggaatagaggtctcttcacaaaatcaa
ggtgatcatgtattccttggacagccccagctggaattctatcttcctcaaattacaagt
gctctcacatctttaactagcctaagctgtaatgcaggatcacaaacacaaaccagtgtg
gcactgaaaattaaaaacacagatccattggtggcatcaaagttccaaattgacagtgaa
aaacttataaacagtcttgtgggcactaccatcaccaatgcatctcatcttactgcagag
tacttggattcactttgggaaacattccaaatcaaatctgcaaacagaaggaaagtacta
ctaatctttacagatggtttggatgatagaatagaaatcctgaaagacaaatcagaagaa
ctgaaaaaaaaaggattggatgcattaataactgtggttttggaaggagcttcaaatttt
gatgacctgcaattcattgaatttggaaaaggctacggctacaagatccagctgaatatt
ggcatgagagatattgcaagtcaattgttcaaatatatgaataacattgctgaacggact
tgttgctgcatatactgcaaatgcattggtgaagaaggagaaccaggtgaacaaggaaaa
tatggaatggagggatctcaaggttttgaaggaagcccagggcacttaggagatgaaggg
gaacctggtccaagagggttgccaggatcagatggtgataaaggttacagtggttgccaa
ggcaataggggacctaagggacaaagaggaataattggtgagaagggaagcaatggagaa
aaaggatttgatggcattaatggagagctaggctcccctgggcttccaggatttaaagga
gaaaaaggtgaccctggtaaccagggcagcccaggagtcaagggaattcatggtgaatgt
ggcaaaaatggtttccaaggagatctgggtgaaaggggaccctttggacctacaggagat
ccaggatccaaaggaaccaaagtaagaaccaaagaaagaaaaatttatattgatttttct
tatgagtga
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integrated database retrieval system
