KEGG   Thamnophis sirtalis (common garter snake): 106549588
Entry
106549588         CDS       T06107                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03013  Nucleocytoplasmic transport
tsr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106549588
  09122 Translation
   03013 Nucleocytoplasmic transport
    106549588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsr03019]
    106549588
   03041 Spliceosome [BR:tsr03041]
    106549588
Messenger RNA biogenesis [BR:tsr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106549588
Spliceosome [BR:tsr03041]
 Complex C
  Other components
   EJC/TREX
    106549588
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106549588
SSDB
Motif
Pfam: THOC2_N Thoc2 Tho2
Other DBs
NCBI-GeneID: 106549588
NCBI-ProteinID: XP_013922759
UniProt: A0A6I9YFH1
LinkDB
Position
Unknown
AA seq 836 aa
MPSILADVFCILDIETSCLEEKSKRDQFMQLVLACLNLVSDTILKERLDPETLESLGLIK
QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSELILENIKSL
IGCFNLDPNRVLDIILEVYECRPEYDEFFVPLIESYMYMCEPQTLCHILGFKFKFYQEPN
GETPVSLYRVAAILLQHNLIDLEDLYVHLLPSDHAILEEHRREIGEAKQIVRKLTMVVLS
SEKTEEKEKEKEKEEEKMEKPPDNQKLGLLEAMLKIGDWQHAQSIMDQMPPFYATSHKPI
ALALCQLLHVMIEPLYRRVGVLKGARGTPVPPLQNKRAPKPVEHFEDLRKEVFNMLCCLG
PHLSHDPILFAKVLRLGKAFMKEYQLDVNRQEDREKMEILFSCLLSITDQVLLPSLSLMD
CNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVKVKAQIIDRAKYIMKRLTKE
NVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEA
LANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVANQLKAGKSFDLLIL
KEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLA
LPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPS
IDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQQKVHKYITSCEVVMAP
VHDAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPRGSYEREVNKLKIQMKAIDD
NT seq 2508 nt   +upstreamnt  +downstreamnt
atgccttccattctggctgatgtattctgcatattagacatcgaaaccagttgtttagaa
gaaaaaagcaaaagagaccagttcatgcagttggtgttagcttgcttgaacctggtttcc
gatactatattgaaagagcgcctggacccagaaactctggaatcattagggcttatcaag
cagtcccagcagtttaatcagaagtctgtgaaaataaagacaaaacttttttataagcaa
cagaaatttaatttattaagagaagagaacgaaggctatgcaaaactgattgctgaactg
ggacaagatttatctggaaatatcaccagtgaattgatcctagagaatattaagtcttta
ataggatgttttaacctggatcctaaccgagtgttggatattatcttggaagtctatgaa
tgtcgaccagaatatgatgaattttttgtacctttgatagagtcgtatatgtatatgtgt
gaacctcaaactctctgccatatacttggattcaaattcaagttttatcaggaaccaaat
ggagagactccggtctctttgtacagagtcgctgccatccttttgcaacataacttaata
gatctggaagatctttatgtgcacctcctgccatccgaccacgctatcctcgaagaacac
aggcgggaaatcggggaggcgaaacaaattgtaaggaaacttaccatggttgtgctctct
tccgaaaagacggaagagaaagagaaggagaaggagaaggaagaggagaaaatggaaaag
ccaccagataaccagaaactgggtttattagaagccatgttaaaaattggtgattggcag
catgcgcaaagcattatggaccagatgcccccgttttacgcaacttcgcacaaacccatc
gctctcgctctttgccagcttctccacgtgatgattgagcctctctatcgaagagtcgga
gtcctcaaaggcgccagaggaaccccagtcccccctctgcaaaacaagagagccccaaag
ccggtcgaacattttgaagacttgaggaaagaagtgttcaacatgctttgctgtctcggc
ccgcatctctcccatgatcccattctcttcgcaaaagtgttgcgtcttgggaaagccttt
atgaaggagtaccagctggacgtaaacagacaagaggacagagagaaaatggagatacta
ttcagctgcttgctaagtatcaccgaccaggttctgcttccttctctttccctgatggac
tgtaacgcatgcatgtctgaggaactctgggggatgtttaaaacatttccataccagcac
cggtatcgtctctatggccagtggaagaacgaaacatacaatagccatccactgctagtg
aaagttaaagctcagataattgacagagccaaatatataatgaagcgtttaacgaaggag
aacgtaaagccttctggaagacaaattgggaaactgagtcacagcaacccaaccatttta
tttgactatattttgtcgcagatccagaaatatgataacttaataacgccagtggttgat
tcattgaaatacctcacttcactaaactacgatgttttggcttattgcataattgaagcc
ttagcaaatcccgagaaagagaggatgaaacacgacgacactacaatctctagttggctt
cagagcttagcgagtttctgtggtgctgtttttcgaaaatacccgatagaacttgccgga
ctcctccagtatgtggcaaatcaactcaaggcaggaaaaagttttgacctcctcattttg
aaagaagtggtacaaaaaatggctggaattgaaatcacggaagaaatgaccatggaacag
ttagaagccatgactggcggggagcagctgaaggcagagggaggctacttcggtcagatt
aggaacactaagaaatcttctcagagattaaaagacgccctcctggaccacgatctcgcc
ctcccgctgtgccttctcatggctcagcagcgcaacggcgtcatctttcaagaaggaggg
gagaaacatttgaagctggtggggaagctctacgatcagtgccacgatactttggtacaa
tttggtggctttctggcatccaatttaagcacagaggactatattaagcgagtgccttct
atcgacgtcctctgtaacgaatttcacactccgcacgacgctgctttcttcctttcgaga
cctatgtacgcgcaccacatatcgtcaaagtatgatgagttgaagaaagcagaaaagggg
aataagcaacagcagaaagtccacaaatacatcacgtcctgcgaggtggtgatggcccct
gtccacgatgcggtgatctccttgcaccttccgaaggtctgggatgatatcagtccccag
ttctacgccaccttctggtccctgaccatgtacgacctggcggtgccccggggtagctac
gaacgggaagtcaataagctgaaaatccagatgaaagccatcgacgac

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