Thamnophis sirtalis (common garter snake): 106551746
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Entry
106551746 CDS
T06107
Name
(RefSeq) uncharacterized protein LOC106551746
KO
K19719
collagen type II alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106551746
04518 Integrin signaling
106551746
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106551746
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106551746
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106551746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
106551746
NCBI-ProteinID:
XP_013925369
UniProt:
A0A6I9YN84
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MFSFLDSRTLVLLAAIQVILLEVVNCQNEDKEEAGSCVQDGQRYSDKDVWKPEPCQICVC
DTGTVLCDDILCEEMRDCPRPEIPFGECCPICPTDQPTASGQPGPKGQKGEPGDIKNVVG
PKGPPGAQGPSGEPGPRGERGDKGERGAMGPRGPPGLPGKPGEDGEAGKPGKSGERGLPG
PQGARGFPGTPGLPGVKGHRGYPGLDGSKGEAGAPGAKGEAGSSGENGSPGPMLQFSDGI
EGVHTSTMASANSVQCWVLVAFQVKEDVLAHLVLLDLLALLVDQGFQELQGQRVKLVPLA
LVALRVPKALEVNLDPLVLRDLQDLQATLEVTGSLVPKDQPEVLALLVLLVSLAHVGHLG
HKVQQDLWAPKVRRESPELQASKVNKAPRVNLALGDHKEPLGQPAKKGREEDVVNQELQD
QLDHLERGVLPENVAPLALGDSKVPLEILEGLENLACLAPGSNMLSQFCGIHNSQSFQIT
FYVHKSPFLNDLDSENLYRFKFVDLPHFQCQVVSLVALGMLVLKAKLAHLVFRVKMDGLA
HLVLKVLVVSLVSWVSQAPKVLMVKAVKLARKGYLVLLDYEVFLAKMAYSVVVVVSDDDD
DICRGLLEREVNKVPLDHLDSKDFQDPQALQVKVEKQVTKVFLEKLVLLVLLVPEVNVAS
QENADLQVPKVWVVLEGFPEPLVLMDPRVQLALLGLLEPKAPQACRECLVREELEVFLDQ
RETGVMLVRKAQKVLLAKMAAEVNQVLLAQVELLVLGVPLVSVEKPDPLAPLGLLVPLVL
MASLVLKASKVDLARKEMLGPLVHKGHLVLLVHSFWHAVDQDMLTWADGPCFKVQVQIY
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttctggattcaaggactctggtgctcctagcagctattcaagtaatttta
ttagaagttgtcaattgtcagaatgaggataaagaggaggcaggcagctgtgtacaggat
gggcagagatatagtgataaagatgtgtggaaacccgaaccgtgccagatctgtgtttgt
gacactggcactgtcctctgcgacgatattctctgcgaagaaatgagagactgtcccagg
cctgagatacccttcggagaatgttgccctatatgtcctactgatcagcccaccgccagt
gggcaacctggtcccaagggtcaaaagggagaacctggtgatatcaagaatgttgtagga
ccaaaaggccctcctggagcacagggaccttcaggtgaaccaggaccaaggggagaacgt
ggagataaaggagaaaggggtgcaatgggtccccgtgggccacctgggttacccggaaaa
ccaggagaagatggtgaagcaggcaaaccaggcaaatcaggagagcgaggattacctgga
cctcagggtgctcgaggtttccctggcaccccaggccttcctggtgtcaaaggtcacaga
ggatatcctggtttagatggctctaaaggagaagctggagctccaggtgctaagggtgaa
gctggatcttctggggagaatggttctcctggtcctatgttgcaattcagtgatggtata
gagggcgtccacacatctaccatggccagtgcgaattcagtccagtgttgggtcctcgtg
gccttccaggtgaaagaggacgtcctggcccatctggtgctgctggacctgttggccctt
ctggtggaccagggtttccaggagctccaggggcaaagggtgaagctggtcccactggcg
ctcgtggccctgagggtgcccaaggctctcgaggtgaatctggatcccctggttctccgg
gacctgcaggacctccaggcaaccctggaagtgacgggatccctggtgccaaaggatcag
ccggaggtcctggcattgctggtgctcctggtttccctggcccacgtgggccacctgggc
cacaaggtgcaacaggacctttgggccccaaaggtcaggcgggagagcccggaattgcag
gcttcaaaggtgaacaaggccccaagggtgaacctggccctgggggaccacaaggagccc
ctgggccagccggcgaagaagggaagagaggaggacgtggtgaaccaggagctgcaggac
caattggaccacctggagagaggggtgctcccggagaacgtggcccccctggccttgggg
gactcaaaggtacccctggagatcctggaaggcctggagaacctggcctgcctggcgccc
ggctcaaatatgctaagccagttttgtggcatccataattctcagagcttccagattacg
ttttatgtccataaaagtccttttttgaatgatcttgactcagaaaacctctacaggttt
aaatttgtagatctgccccattttcagtgccaggtggtctcactggtcgccctggggatg
ctggtgctcaaggcaaagttggcccatctggtgttccgggtgaagatggacggcctggcc
cacctggtcctcaaggtgctcgtggtcagcctggtgtcatgggtttcccaggccccaaag
gtgctaatggtgaaagcggtaaagctggcgagaaagggttacctggtgctcctggattac
gaggtcttcctggcaaagatggcttacagtgttgttgttgttgtttctgatgatgatgat
gatatttgcagggggctgttggagagagaggtgaacaaggtgcccctggaccatctggat
tccaaggacttccaggacccccaggcgctccaggtgaaagtggaaaagcaggtgaccaag
gtgttcctggagaagctggtgctcctggtcttgttggtcccagaggtgaacgtggcttcc
caggagaacgcggacctgcaggtgcccaaggtttgggtggtgctagagggcttcccggaa
cccctggtactgatggacccaagggtgcagctggccctgctgggcctcctggagcccaag
gccccccaggcctgcagggaatgcctggtgagagaggagctggaggtattcctggaccaa
agggagacaggggtgatgctggtgagaaaggcccagaaggtgctcctggcaaagatggca
gccgaggtgaatcaggtcctcctggcccaagtggagctgctggtactcggggtgcccctg
gtgagcgtggagaaaccggaccccctggccccgctgggtttgctggtccccctggtgctg
atggccagcctggtgctaaaggcgagcaaggtggatctggccagaaaggagatgctgggt
cccctggtccacaagggccatctggtgctcctggtccacagtttttggcatgccgtggac
caggacatgttgacctgggcagatggaccatgcttcaaagttcaggtccagatctattga
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