Telopea speciosissima (New South Wales waratah): 122657290
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Entry
122657290 CDS
T07910
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122657290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122657290
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122657290
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122657290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
122657290
NCBI-ProteinID:
XP_043707877
LinkDB
All DBs
Position
1:69860090..69905000
Genome browser
AA seq
2458 aa
AA seq
DB search
MLPFSSTVSNQIRFLLQSLNDSNSDSVVRELWQFTEYGSEGSILLLQTCLDHINFHGGNM
QNMPTKPDFLAAVFRYLLDKPNFSTVFCEALRNTSINEAFLGDFCNALHLSVSEKIGLGL
ALCDSENPDIRTCGQNFCMSQIEELCTNPTSFDSHGQIQNIVMFLRRSESLAKHMDSFMQ
MLSLLQLKDITTFISDPFLSDDLRGADSLRHLDLFYESNQNDFDAVLAEIEKEISMADVM
KELGYGCTINASHCKDVLSLFLPLTEGTLSRVLSTMAQTHYGLEDCQNAYSIFCSALSGN
SVPESPCLNSWNVDILVDSIKQLAPGTNWVSVMENLDHEGFYFPNEEAFSFFMSVYANAC
QDPFPLHAICGSVWKNAEGQLSFLRYAVSAPPEIFTFAHSARQLAYVDAVHGHKLPQGNA
SQAWLCLDLLEVLCHLAERGHAGSVRTILEYPLKNCPEVLLLGMAHINTAFNLLQYEVSS
TVLPKIIGNAIKNGVFLHLWHVNPNLLVRGFTDVHFGDQESMTRILGSCLELKIVSAVLD
ITPFSFSIKLAALASRKEQINLEKWLNDNLSTHKDVFFEECLKFLREIPLDATHDPANPF
QQSVGVLNAYSETSSTFFKVLQAHAAQIASDQLAEELKKLHLASMHATPRLQNGGAVEST
SDGYADDIEAEANSYFHQMFSGQLSIDAMVQMLARFKESPDKREQSIFECMIANLFEEYK
FFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDALRKSADSKMFIFGAKALEQ
FVDRLVEWPQYCNHILQISHLRGTHSELVAFIERALARISSGHTESNEVNSTSNDQPQGS
AQATSETLEASDSSWQLMGSNFTQPGQQVSSPLQLQQRHQGFLDDRHKASVTSVSYMKPL
PSPAGQPSLVSTHDAVGNQKSILSQPLQTVPSQNVGSGPAAVSSSPGFLRSSRGITSTSM
LRQHSYNTGFGSALNIETLVQAAERRDTPIEAPASEIQDKILFIVNNISTANLEAKAKEF
TEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLEKVNSKDLNKEIVKATYENCKVLLR
SELIKSSSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKALIIEAYEKGLMIAVIPFTS
KILEPCQYSLAYQPPNPWTMGILSLLTEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPT
SLLKDRVREVEGNPDFSTKDIGASQPQMVAEVNSGMIAALNQVDLQPEVSPPSHPGGHSN
VLSQYTAPLHLASGSLVEDEKMATLSLSDRLSTGQGLSQVSPSQSQFSVSQLSASIANIG
AHVVINPKLSALGLQLHFQRIVPMAMDRAIKEIMSPIVQRSVTIAMQTTKELVLKDYAME
SEENRIYHAAHLMVASLAGSLAHVTCKEPLRGSISSHLRNLLQALNIAGEILEQAVVLVT
NDNLDLGCAVIEQHATEKALGAIDGEISQLLSMRRKHREGVGPTYFDASTYTQGPMGVVP
EALRPKPGRLSHSQQRVYEDFVRYAWQNQSNQSSNAVPASPPASSGVSISSGMSRAYGST
IGQLNQGVYSSGQGAQGFGAVAQPMDLMSEEIDPGSQPFISASSTHIGVPDGVIQHGSEI
NSAVASLTSTVAASELHSVESSTAVKELGANVQPSPSPSATERLGSGSSEPFFTTGDALE
KYQFVAQKLETLVTKDAKEAEIQGVIAEVPEIILRCISRDEAALAVAQKVFKSLYENASN
NVHVGAHLAILVAIRDVCKLVVKELTSWVIYSDEERKFNKDIAVGLIRSELLNLAEYNVH
MAKLIDAGRNKTATEFAISLLQALVVQEPGVSVSELHNLVDALAKLAMRPGSPETLQQLV
DIARNPAANSAALSSLTTGKEDKTRQAREKKQSPGRSMAIREDYTNAESMAADPAGFREQ
VTVLFGEWCRICELPGANDAAYTHYISQLQQSGLLIGDDISDRFFRILTELSVAHCLSTE
VTTPASLSLQPHHSQHMSFFAIDMCAKLIFLILKYCTVDQGSNRLFLLPKILSVTVRVIQ
KDAEEKKTSFNPRPYFRLFINWLYDLGSLDPVLDGANFQVLTAFANAFHALQPLKVPGFS
FAWLELVSHRSYMPKLLTLNPQKGWPLVQRLLVDLFKFLEPYLRNAEMGEPVHFLYKGTL
RVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLA
EISQSPRILSEVDTALKAKQMKNDIDEYLKTRQQGSSFLAELKQRLLLPPSEAAQAGTRY
NVPLINSLVLYVGMQAIQQLQTRTAPHAQPMAQGASMDIFLVGAAMDIFQTLIGELDTEG
RYLFLNAVANQLRYPNNNTHYFSFVLLYLFAEANQEIIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPRYNFWNRSFTRCAPEIEKLFESVSRSCGGPKPMDESMVSGGISDSTH
NT seq
7377 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctcttcgacggtttcgaaccagattcggttcttgcttcagagcttgaac
gactcaaactccgattcggtcgttcgcgagctatggcagttcactgagtatggaagtgag
ggaagcatattgctgcttcaaacctgcttggatcacataaattttcatggcgggaacatg
cagaacatgcctacgaaaccagattttcttgctgcagtatttagatatttattggataaa
ccaaatttcagcacagtgttttgtgaagcattaagaaatacatccatcaatgaagctttt
cttggagatttctgtaatgcattacacttgtcggtatctgagaaaattggccttggcctt
gctttatgtgattctgaaaatcctgatatcagaacatgcggtcaaaatttctgcatgtcc
cagattgaggaattgtgtaccaatcccacatcttttgattctcatgggcaaattcagaat
attgtcatgttcctgcgtcgatcagagagccttgccaagcacatggattcctttatgcaa
atgctatccttattgcaattaaaagacattactacttttatatcagatccatttctttca
gatgatttacggggtgctgattctttgcggcatttggatctattctatgagtccaatcaa
aatgattttgatgcagttctagcagagattgagaaggaaattagcatggcagatgttatg
aaggaacttggctatggttgcactattaatgcgtcacattgcaaagatgttttatccctt
tttctaccactgactgaggggaccctctcccgggtacttagcacaatggcacagactcat
tatggtcttgaggactgccaaaacgcatattcaatattttgctctgcacttagtggcaac
tcagtaccagagtcaccatgtttgaactcctggaatgtcgatatccttgtagattcaatt
aaacaacttgctccaggaactaattgggtcagtgtgatggaaaacctggaccatgagggg
ttctatttccccaatgaggaggcgttttccttttttatgtctgtttatgcaaatgcatgc
caggatccgttcccactccatgccatatgtgggtccgtctggaagaatgctgaaggtcag
ctatctttcctaagatatgcagtttctgcaccaccagaaatattcacctttgctcattct
gcaaggcaactggcatatgttgatgcagtacatggtcataagcttccacagggaaatgca
agtcaggcgtggttgtgtcttgaccttttggaggtgctatgtcacctagctgagagaggt
catgctggctctgtgcgaacaattcttgagtatcctcttaaaaactgccctgaggtcttg
cttcttgggatggctcatattaatactgcatttaaccttctccaatatgaagtatcctca
actgtacttcccaagataattggcaatgcaataaaaaatggagtgtttcttcatctgtgg
catgttaatccaaatctgttggtccgtggctttacagatgttcattttggtgatcaagaa
agtatgaccagaattctgggcagttgcctagagctgaagattgtatcagcggtattggac
ataacacctttctcattcagtattaaactggctgcccttgcttctcggaaagagcaaata
aatttggagaagtggttgaatgataatctgagcacacataaggatgtcttttttgaggaa
tgccttaagttcttgagggagatacccttggatgcaacacatgatcctgctaatccattc
cagcaatctgttggtgtgttgaatgcctattcagagacgagctcaacatttttcaaggtc
cttcaagctcatgctgcacagattgcttctgaccagcttgctgaagaattgaagaagttg
catttagcatccatgcatgccactccgagactgcagaatggtggagccgtggagtcgaca
tctgatggttatgctgatgatattgaggcagaggccaactcttatttccatcaaatgttc
tctggtcagctgagcattgatgcgatggttcaaatgcttgctcgcttcaaggaatctcct
gataaaagggagcaatcaatttttgagtgcatgattgcaaatttatttgaggagtacaaa
ttcttcccgaagtatccagaaagacaacttaagattgctgcagttctctttggttcccta
ataaagcatcagctggttacccatcttacacttggtattgcccttcgtggagtcttggat
gcactgcgtaaatctgctgattccaaaatgttcatatttggggccaaagctttggagcag
tttgtggaccgtttagtggaatggccgcagtattgtaatcatatcttgcaaatatctcat
ctgcgtggcacccattcggagcttgttgcattcattgaacgtgctcttgctaggatctca
tcaggccacacagaatcaaatgaggtgaacagtacatctaatgatcagccgcaaggttct
gcccaggctacttcggaaactttggaggcatctgactcttcctggcagttaatgggatct
aattttacacaacctgggcaacaagtctcctccccgcttcagctgcaacaaagacatcaa
ggttttcttgatgacaggcataaagcctccgtaacttcagttagttatatgaagcccctt
ccttcccctgctgggcagccttcacttgtttccacacacgatgccgtgggaaatcagaag
tcaatactctctcagcccttgcagacggtgccttcacagaatgtgggaagtggtccagca
gctgtgtcatcttcacctggttttctgcgctcttcccgagggattacatcgactagtatg
cttagacaacattcatataatacagggtttggttctgctttgaacattgagacacttgtt
caagctgctgagagaagggacactcctatagaggcacctgcatcagagattcaagacaag
atactgtttattgttaataatatttcaactgcaaatcttgaagctaaagcaaaagaattt
actgagattctgaaggagcagtactatccatggtttgcacagtatatggtgatgaaaaga
gcgagcatcgaaccaaatttccatgatctctacctgaagttcttagagaaagttaattca
aaagatttaaataaggagatcgtgaaagctacttacgagaactgcaaggttcttttaaga
tcagagcttataaaatccagttcagaagagcgttccttgctaaaaaatcttggtagctgg
cttgggaagttcacaattggaagaaatcaagcattaagggctcgggaaatagatcccaaa
gccttgataatagaggcatatgagaagggattgatgattgcagtgatcccctttacctca
aagattttggaaccatgccagtacagtctagcatatcaacctcccaatccttggacaatg
ggaatccttagtttgcttactgagatctatgctttgccaaatttaaaaatgaacctcaag
tttgatatagaggtattgtttaagaatcttggtgtggatatgaaagatgttaaaccaact
tctcttcttaaagatcgggttagggaagttgaaggaaatcctgatttttcgacaaaagat
attggagcatcccagccccaaatggttgccgaagttaactctggaatgatagctgcatta
aatcaagttgatcttcagcctgaggtgtcccctccatctcaccctggtggtcattcaaat
gttttatcgcagtatactgctcctcttcatcttgcttcgggttcactggtggaggatgag
aagatggcgaccttaagcttatctgatcgactttctacgggtcaaggactttcacaagtc
agtccgtcccagtcacaattttctgttagtcagctttctgcttcaattgctaatattgga
gctcatgttgttatcaaccctaagcttagtgccttgggcctccagttgcattttcaaaga
attgttccaatggcaatggatagggctatcaaagagataatgtcccctattgttcaacgc
agtgttactatagcaatgcagacaacgaaggaactggttctgaaggactatgccatggag
tcagaggagaaccgaatatatcatgctgcacacttgatggtagcaagcctcgcaggaagt
ttagcacatgttacatgcaaggaacctcttcgtggttccatttccagtcacttgaggaat
ttgcttcaggccttaaatattgccggtgaaattcttgaacaagctgtggtacttgttaca
aatgataaccttgatctgggttgtgctgtgattgagcaacatgcaacggaaaaggctctg
ggtgccattgatggggaaatatctcaactactttctatgaggaggaagcatagagaaggt
gttggtccaacatattttgatgcaagtacttacacacaaggtcctatgggtgtagtacca
gaggccttgcgaccgaaacctggccgcttgtcccattcccaacagagagtttacgaggat
tttgtaaggtatgcgtggcaaaatcaatcaaaccagagctcaaatgctgtgcctgcttct
ccacctgcttcatctggtgtctctattagttcagggatgtctcgtgcttatggttccact
ataggccagctcaaccaaggtgtctactcatctgggcaaggggcacaaggatttggtgct
gttgcacagcctatggacctaatgtccgaagagatagaccctggttcacaaccatttata
agtgcttcctcaactcatattggagtgcctgacggtgttattcagcatggttctgagatc
aactctgccgttgcttcattaacttctactgttgcagcctcagaattgcattcagtggaa
tcctctactgctgtaaaggaattgggagctaatgtacaaccatcaccttcaccatctgcg
acggagcgcttgggaagtggttcatcggagccttttttcacgacaggagatgcattggag
aagtaccagtttgtggcccaaaagctggaaactttggtcactaaagatgccaaagaagca
gaaattcagggtgttattgctgaggttcctgaaattatactcagatgtataagtcgagat
gaggctgcattggctgtggctcaaaaggtttttaagagtttatatgagaatgcatcaaat
aatgtacatgttggtgcacatcttgcaattctggtggctattcgagatgtttgcaagctt
gttgtcaaggagctcacaagttgggtgatttactcggatgaggagcgcaagttcaacaag
gatatagctgttggtctcattcgcagtgaattactaaaccttgcagagtacaatgtacac
atggcaaagcttattgatgcaggaaggaacaaaactgctacagagtttgccatttctctt
ctccaagcgctggtggttcaggaacctggtgttagtgtgtcagaactccacaatcttgtt
gatgccttggcaaagcttgcaatgaggcctggatcccctgaaactttacagcaattggtt
gacattgccaggaatcctgctgctaattcagctgcattgtctagtttaaccactggcaag
gaggataagactagacaggcccgggagaaaaagcagtctcctggtcgctccatggcaatc
agggaagactataccaatgctgaatctatggcagcagatcctgctggtttccgtgaacag
gttacagtcctgtttggtgaatggtgtcgaatttgtgaacttcctggtgcaaatgatgca
gcttatacacattacatttcccaattacaacaaagtgggttgcttataggggatgatata
tcagatcgctttttccgtatcctaacggaactttcagtagcacactgcctatctactgag
gtaacaactcctgcctcattatcgctacagcctcatcattcccagcatatgtcatttttt
gctattgatatgtgtgcgaagctcatctttctaattctcaagtactgtacggtggaccaa
gggtcaaatagactgtttcttttgcccaagatcctatcagtaactgtgagggtcatccag
aaagatgcagaggaaaagaagacatccttcaatccaagaccatatttcagattgtttatc
aactggctttatgaccttggttctctagatccggtccttgatggtgccaactttcaggtg
ttgacagcatttgctaatgcttttcatgctttgcaacccctcaaagttcctggtttcagc
tttgcttggcttgagctggtgagtcacaggagttacatgcctaaattgctcacacttaac
cctcagaagggttggcctcttgttcaacggctgctggtggacttgtttaagtttttggag
ccatatttaaggaatgctgaaatgggtgaaccggttcactttctgtacaaaggaactttg
agagtgctgctcgtgctgcttcatgatttccctgagttcctctgtgattatcatttcagc
ttctgtgatgtaatacctcccagctgcatccagatgcggaatgttatcctcagtgcattc
ccccgcaatatgaggctgcctgatccgtccacgcccaacttgaagattgatctactagca
gagatcagccaatcaccgcgcattttgtctgaagttgatactgctctgaaggcaaagcaa
atgaagaatgacattgatgagtatctcaagacaaggcaacaagggtcttccttcttggca
gaactgaagcagagattgttgcttcctccaagtgaggcagcccaggctggaacccgatac
aatgtgcccttgatcaactccctcgtgctttatgtgggaatgcaggctattcagcaacta
cagacaaggactgcaccgcatgcacaaccaatggcacagggtgcctccatggatattttc
ttggtgggtgctgccatggatatcttccagactttgattggggaactcgatacggaaggt
cgctacctcttcttgaatgcagttgctaaccagctacgatatccaaataacaatacacat
tacttctcttttgtcctcctctacttgtttgccgaagcaaaccaggaaattatacaggag
caaataactagggtattgttggaacgcttgattgtcaacagacctcatccttggggcctg
ttgatcacttttattgagctcatcaagaatcctaggtataatttttggaatcgatcattc
actaggtgtgcaccggagatagagaaattgtttgagtcagtctcaagatcttgtggagga
cctaaacctatggatgagagtatggtttccggtggtatctctgacagcacacactga
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integrated database retrieval system
