Telopea speciosissima (New South Wales waratah): 122660234
Help
Entry
122660234 CDS
T07910
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122660234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122660234
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
122660234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_16
TPR_19
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
122660234
NCBI-ProteinID:
XP_043711389
LinkDB
All DBs
Position
4:complement(6676929..6692999)
Genome browser
AA seq
1006 aa
AA seq
DB search
MFTAAIKSYGRAIELEDSRFFALVEGGNILLMLGSFRKGIEQFRQALEISPHDVAALYGL
ASGLLGLSKECVHSGAFGWGTALLEEASEIVKTSTSLAGNNASSWKLHGDIQITYAKCFP
WMEEGLNFETDEEAFRNSILSWKRKCLSAAISASHSYQRSLHLAPWQANIYTDIAISLDL
ICSLEERIKPEPDAWQLSEKMCLGGLLLEGDNNDFWVALGCLSNNNALKQHALVRGLQLD
VSLAVAWAYLGKIYRNEGEKQLAKQAFDRARSIDPSLALPWAGMSVDIHAGGYTPDEAYE
SCLRAVQILPLAEFQIGLGKLAALSGHLSSPLVFGAICQAVQHAPHCPESHNLNGLVCEA
RSDYQSAVAAYRLARLTISTSTRMGPDSLFCDISINLARSLFLAGNALDAAQECELLKKE
GLLDSRGLQVYAISLWKLGKNDLALSMARSLAASVSTMESTAGATSISLIFKLLYHISGI
ESAVTSILKMPRELLQSSKISFIVSAIHALDHSGRLESTVSITRRFVTSHEEITGMHSLI
ALSKLVKHGSELNLDNQSRVNHLKKVLHMYPNSSLIRNELGHLLVSSKKWKDTHTVTRCV
VIDPPGRTSVEASNSAYKILGAAAIACYACGTTNQKFSFPTCKDQFMHEGQATKQMQKWL
HQEPWNHNARFLLLLNALQKAREERFPQHLCGTLERLLSAALLDEVYSKKDVSHQYQKFQ
LLLCASEISFQAGDHFGCINHATNASRLVLPDGILFFAHLLLCRAYAVQEDLSRLQDEYT
KCLQLKTDYQIGWVCLKFLVSRYKLQIDSNAIDLNFEECFKESESTSNLWMAIFELVRGQ
ISIRDHDYLSAQEAFARACSLARADSCVHLCHGAICMELARQGYGFQFLSVAASSLRKAQ
GCSVIPLPIVSAVLAQAEASLGSKAKWEKNIRLEWFSWPPEMRPAELYFQMYLLARQLKD
GSDSASNVESYQSPKRWVLRAIHLNPSCLRYWKVLLKWSDCPSFWY
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtttacagctgctataaagtcatatgggcgagccattgaattggaggactcaagattc
ttcgcattggttgagggtggaaacattttattgatgcttggctccttcagaaaaggaatt
gagcagtttcgacaggctttagaaatatcacctcatgatgttgctgcactctatgggctc
gcttccgggctgcttggtttgtctaaggaatgtgttcattctggtgcatttggttgggga
actgcattattggaggaagcatctgagattgtgaaaacaagtacatccttggctggaaat
aatgcctcttcctggaaattgcatggtgatattcagattacatatgcaaaatgtttccca
tggatggaagaaggattgaactttgaaactgatgaggaggctttcagaaattccatcctt
tcttggaaaaggaagtgtctttcagctgcaatatctgcgagtcattcctatcagcggtct
ttgcacttggctccatggcaagctaacatctatactgacattgcaatctctcttgatctc
atttgttctttggaggagaggattaaacctgaaccagatgcttggcagttatctgagaag
atgtgccttggtggtttactacttgaaggagacaacaatgatttctgggtggctctaggt
tgtttatccaacaacaatgcattaaaacaacatgctcttgtccggggattgcagttggat
gtatctcttgctgttgcatgggcataccttggaaaaatttacagaaatgagggtgagaaa
caactggcgaaacaggcatttgatcgtgctagaagcatagatccctcacttgcattacca
tgggcaggcatgtctgtggatattcatgctgggggttacacaccagatgaggcttatgaa
agctgtctacgggctgttcagatattgcctcttgcagagttccagattggtcttggaaag
cttgctgctctttcaggccacctgtcatctcccctagtttttggagccatctgccaggct
gtgcaacatgcacctcactgtcctgagtcacataatctaaatgggctggtttgtgaggcg
aggtcggattatcagtctgctgttgctgcttataggctagctcgattaaccatcagtact
tctaccagaatgggaccagactccctcttctgtgatatttccattaatctggctaggtca
ctgtttttggcagggaatgctcttgacgctgctcaagaatgtgagcttctgaagaaagaa
ggtttgcttgatagccggggcttgcaggtgtatgccatctctttatggaaacttggcaag
aatgacctggccctttctatggcgagaagcttagctgcaagtgtttctactatggaaagt
acagctggtgctacctccattagtttgatctttaaattgctctaccacatctcggggata
gaatctgcagtaacaagcatcctgaaaatgccaagggaactattgcagagttcaaaaatc
agttttattgtctctgcaattcatgctctagaccatagtggcagactggagtcaactgtt
tcaattacacgacgttttgttacatctcatgaggagattactggaatgcactctttaatt
gccttaagcaaactagtcaaacatggatcagaactgaacctggataatcagagtagagtc
aatcacctcaaaaaagttcttcatatgtaccctaacagcagtttaataaggaatgaactt
ggtcatcttttggtatccagtaaaaaatggaaagatacgcatacagttactagatgtgtc
gtcatagaccctcctggtcgcacaagtgtggaggcttcaaactcggcatacaagattcta
ggtgctgctgcaattgcatgctatgcctgtggtacgaccaaccaaaagttctccttccct
acgtgtaaagaccagttcatgcatgaaggacaggcaaccaaacaaatgcagaaatggtta
catcaagaaccatggaaccataacgcacggttcttgcttctacttaatgctctacagaag
gctcgtgaggagagatttcctcagcatctttgtggtacacttgaacggctactgtcagct
gctctcttggatgaagtatactcaaagaaagatgtctctcatcaatatcaaaagttccaa
cttctcctttgtgcttctgagatcagtttccaagctggggaccactttggatgcatcaac
catgctacaaatgcatcaaggcttgtgcttcctgatggaattctcttttttgcacatctg
ctactgtgccgtgcctatgcagttcaagaggatttatcgagactgcaggatgagtatacg
aaatgcttgcagctcaagactgattatcaaattggttgggtatgccttaaatttctagta
tctagatacaaactccagattgattcgaatgccatagacttgaacttcgaagagtgcttc
aaagagagcgagagtacctcaaatctgtggatggccatctttgagttagtaagaggtcaa
atttccatacgggatcatgattatctttctgctcaagaggcttttgcacgtgcttgttca
ttggcaagagcagacagttgtgtccatctttgtcatggggccatttgtatggagcttgcc
aggcaagggtacggtttccagttcttatcggttgcagcaagcagtctcagaaaagctcaa
gggtgctctgtcattcctctccctattgtatctgcagtgttggctcaagcagaagcaagc
cttggctccaaagcaaaatgggagaaaaacatccgtcttgaatggttttcttggccacca
gagatgagaccagcagaattgtattttcaaatgtatttgcttgcaaggcaactgaaagat
ggttctgattctgcatcaaatgtggagtcctatcagagtccgaagagatgggttctccga
gcaatacatttgaacccatcctgtttacgatactggaaggttttgctgaagtggagtgac
tgccctagtttctggtactaa
DBGET
integrated database retrieval system
