Telopea speciosissima (New South Wales waratah): 122671442
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Entry
122671442 CDS
T07910
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122671442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122671442
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122671442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_11
TPR_19
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
122671442
NCBI-ProteinID:
XP_043724581
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Position
8:43524668..43571012
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AA seq
853 aa
AA seq
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MDSRDLSSSATASRDGSSAEEDGLLSVTAGLAKEAALLFQSGRYTECIDLLNQLLQKKED
DPKVLHNIAVAEYFRDGCYDPRKLLDVLNKVKMRSEELARASGDQVEVSSNLGNNVVSGS
KGSTVTQHQFSAANSSSIAYTDESDTSVATLNTAVILFHLHEYSNALSVLEPLYQNIEPI
DETTALHICLLLLDVALALHDASKAADVIQYLEKAFGVGYMIGQGDNGSTNQHQSSNAVV
RPQSAPSNSTPADASNSDSAANSNSSENPLTRTISDEALESLLSTLDSGGQNLTRPVGLP
SNDLLRTSTDRPVPGVDLKLKLHLYKVRHLLLTRNLKATKREVKLAMNIARGRDSSMALL
LKSQLEYARGNHRKAIKLLMTSSNKTESGIASIFNNNLGCIYHQLWKHHTSTMFFSKALR
SSSSLRSEKPLKLSTFSQDKSLHIVYNCGLQYLSCGKPIIAARCFQKASLVFHNRPLLWL
RFAECCLLALEKGLLKSSESPTNGEEVRVHVVGNGKWRQLLVEDGISRNRYLDPVEEEDG
LLGGDGQHRLSISFARQCLLNALHLLNSLELKYLNDGLSNSATEEDDSSQSGSLKNSNSK
NLLVGDSKASNVAVVSASANANGDAKEARVVSLNNTLQSSVSAYEDMCKRENHWIKQAVL
ADLAYVELNLENPLKALSAANSLLKIPECSKIYIFLGHIYAAEALCCLNRAKEAAEHLSV
YVSDGNVELPFSEEDKKWQVERGGDGEELNGGSVAASYPSMEDSQGIMFLKPEEAHGTLY
VNLAAMSAMQGDLEQAHRFVTEALYQLPNNPQAVLTAVYVDLLLQKTQAALAKLKQYSHV
RFIPSNVTFNSCA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggactcccgagatttatcgtcctcagcgactgctagtagagatggttcttctgcggaa
gaggatggcctactctccgtcactgccgggcttgctaaggaggctgctttattgtttcag
tcggggaggtatacggaatgcatcgatctattgaatcagctcctacagaaaaaagaagat
gatccgaaggttcttcataacattgccgttgcggagtactttcgtgatggttgttatgat
ccaaggaagctacttgatgtgcttaataaagttaagatgagaagtgaagagcttgctcgt
gcatctggagaccaagtggaggtttctagcaatcttggtaataatgtcgtttcaggatct
aaagggagcactgtcacacaacatcaattttcggctgcaaacagttccagtattgcatac
acagatgaatctgacacttcagttgcaaccctaaacaccgctgttatcttgtttcatctt
catgaatattcaaatgcactatcagttctcgaaccattatatcagaatatagaacccata
gacgagacaacggctcttcacatatgccttttgttactggatgttgctctagcgttgcat
gatgcgtcaaaagctgcagatgttattcagtatctggaaaaagcttttggtgttggttat
atgattggtcaaggtgacaatggaagcaccaaccaacatcaatcatcaaatgctgtagta
agacctcaatctgcaccgagcaattcaactcctgctgatgcttctaattcagactcagct
gccaattcaaattcctctgaaaatcctttaacaagaaccatatcagatgaggcacttgaa
tcccttctatcaacactagacagtggtgggcaaaacttgacaaggccagttggcctccca
tcaaacgaccttttgagaacctccactgatcggcctgttcctggtgttgatctgaagctc
aagctgcatctctacaaggtgcgacacctgcttctcactaggaacctgaaagcaacaaag
cgtgaagttaagctagctatgaacattgcacgtggtagagattcttccatggcattgctt
ttaaagtcccagctagagtatgctcggggtaatcaccgtaaagctatcaagctcttgatg
acgtcaagtaataagacagaatctggaattgcaagcatattcaacaacaatctcggttgc
atctatcatcaactctggaaacatcacacatcaaccatgttcttttctaaggcactgaga
agtagttcatctcttcgatcagagaaacctcttaagctctcaacattctcccaggataaa
tccctccatattgtgtacaactgtgggttgcaatacttatcctgtgggaaaccaataatt
gctgctcgctgttttcagaaggccagtttagttttccacaatcggcccctcttgtggctc
cgatttgctgaatgctgtctattggcacttgagaaggggcttctgaagtccagtgagtct
cccaccaatggggaggaagttagagtccacgttgttggcaatgggaaatggaggcaactt
cttgtggaagatgggatatcaagaaatagatatttggatcctgtggaagaagaggatgga
ttgttgggtggtgatggccaacataggctttcgatctcctttgctcggcaatgtcttctc
aatgccttacatttattgaacagtttggagttgaagtacttgaatgatggtttgtccaat
tctgccacagaggaagatgactcaagtcaatcaggatcacttaagaactcaaacagcaag
aatttattggttggggattcaaaggcatctaatgtcgcagtagtttctgcctcagctaat
gcaaacggggatgcaaaagaggccagggtagtgagcctgaacaacaccctacagagttct
gtctctgcttatgaggatatgtgcaaaagggaaaaccactggatcaagcaggctgttcta
gctgacctggcgtatgtagagttgaatttggaaaatccattgaaagcactatcagctgct
aattcacttttgaagattccagaatgttcaaagatatacatctttctaggtcatatttat
gcagctgaggcgctgtgctgtctgaaccgggcaaaggaagcagctgagcatttgtcagtt
tacgtctcagatgggaatgttgagttgccattcagtgaagaagacaaaaagtggcaagtt
gaaaggggtggagatggtgaggagttaaatggtggttcagttgctgccagttacccatcc
atggaagattctcaaggtatcatgttcctgaagcctgaagaggcacatggaactctctat
gtaaatcttgcagcaatgtctgcaatgcagggtgatcttgagcaggctcaccggtttgtg
acagaagctttgtaccaattgcccaataatccacaggcagtactgactgcagtttatgtg
gatcttctgcttcagaagacacaagcagcccttgccaaattgaaacagtacagtcatgtt
agattcatccctagcaatgtaacatttaacagttgtgcctga
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