Trachemys scripta elegans (red-eared slider): 117869311
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Entry
117869311 CDS
T07347
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
3.6.4.13
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117869311 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tst04054
]
117869311 (DHX58)
Pattern recognition receptors [BR:
tst04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
117869311 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
Hydantoinase_B
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
117869311
NCBI-ProteinID:
XP_034611938
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All DBs
Position
23:complement(14637548..14654517)
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AA seq
727 aa
AA seq
DB search
MTAWLRDPRGGLQPAQRPTTDSLWCSRALRWARVSGRGSRPCASCRCPVPARMELRDYQW
EVIVPALEGENIIIWLPTGAGKTRAAAYVCKRHLETRERAKVAVLVNRVHLVDQHYTQEF
QALQDRFRVTPISSDSDQKFFFAKEVKLSDVVICTAKILQNALTSQDEDMHVELTDFSLL
VIDECHHTHKDCVYNQIMEDYLERKLTGQRKLPQILGLTASPGTGGATSIQGAKQHILQI
CANLDTAKIMSSQKHRVHLRAQVPQPRKQYDVSHERPQDPLGQKLKETMAHIHQYLDVGS
LPQDFGTQSYEQRIVELGKEGAQSFCRKKRTCALHLRKYNDALLINDTVRMIDAFNALDE
FYQLEKVTKVLQDPTERFLVSTFEEIKAALLALTSDPRYENPKLSKLEEILQEQFRTLDR
SRGIIFTKTRQSAHALHKWIQENAKLARLDIKAAVLTGAGYSNQTKHMTPNEQQDVIKLF
RKGDLNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMVQARGRARAENSLYSVLAKANS
KEVSRERLNETLEELTQRVIEEVQAMPEKKYRDTITALQRSAIISRKVKKAEGNQKRQLH
DPDAVRLHCINCNMAVCHGSDLRTVEKMHHVNVNPDFKIYYNATSNNVGIPRNFKDWKPG
GSISCANCGQAWGMEMIYRSVTLPILSIKNFVVATPDGNKHLKQWSRVTFTIEEFDYVEY
CSRNLGM
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacagcttggctgagggatccccgagggggactccagccggcgcagcgaccgaccacg
gattcactgtggtgtagccgagccctgcgctgggctcgtgtctcgggccgcggatccagg
ccctgtgcttcctgcaggtgcccagtgcccgcccgcatggagctgcgtgactaccagtgg
gaggtgatcgtgcccgccctggagggcgagaacatcatcatttggctgcccacgggggca
gggaagacccgggcagcggcctacgtgtgcaagaggcacctggagacccgggagcgggcc
aaggtggccgtgctggtgaacagggtgcacctggtggaccagcactacacgcaggaattc
caggccctgcaggatcgcttccgggtcacgcccatcagcagcgacagcgaccagaaattc
ttcttcgccaaggaggtgaagctgagcgacgtggtgatctgcacggcgaagatcctgcag
aacgccctgaccagccaggacgaggacatgcacgtggagctgaccgatttctccctgctg
gtgattgacgaatgccaccacacccacaaggactgcgtctacaaccagatcatggaggat
tacctggagcgcaagctaacaggccagcggaagctgccgcagatcctgggcctcaccgcc
tcacccggcaccgggggggccaccagcatccagggggccaagcagcacatcctgcagatc
tgcgccaacctggacaccgccaaaatcatgtcgtctcagaagcaccgtgtccacctgcgg
gctcaagtccctcagcccaggaagcagtacgacgtgtcccacgagaggccgcaggatccc
ttgggccagaagctgaaggagaccatggcccacatccaccagtacctggacgttggcagc
ctgccgcaggacttcggcacccagagctacgagcagcgcattgtcgagctggggaaggaa
ggagcccagtcgttctgccgtaagaagcgcacgtgcgccctgcacctgcggaagtacaac
gacgcgctgctgatcaatgacacggtgcgcatgatcgatgccttcaacgccctggacgag
ttctaccagctggaaaaggtcaccaaggttctgcaggaccccacggagcgcttcctcgtc
agcaccttcgaggagatcaaggcagccctgctggctctgaccagcgacccgcgctacgag
aaccccaagctgagcaagctggaggagatcctccaggagcagttccggaccctggaccgc
tcccgcggcatcatcttcaccaagacccgccagagcgcccacgccctgcacaagtggatc
caggagaacgcgaagctggcaaggctggacattaaggcagctgtcctgaccggagccggc
tacagcaaccagaccaagcacatgaccccgaacgagcagcaagacgtgatcaagttgttc
cgcaagggagacctcaacctgctcttctccaccagcgtggccgaagagggcctggacatc
ccagaatgcaacatcgtggttcgctatgggctgatgaccaacgagatcgccatggtgcag
gccaggggccgcgctcgcgccgagaacagtctgtactccgtcctcgccaaggccaacagc
aaggaggtgtcgcgggagcggctgaacgagaccttggaggagctcacgcaaagagtcatc
gaagaggtgcaggccatgccggagaagaagtaccgggacacgatcacagccctgcagcga
agcgccatcattagccggaaggtgaagaaggctgaaggcaaccagaagcggcagctgcac
gacccggacgccgtccgcctccactgcataaactgcaacatggccgtgtgccacggcagc
gacctgcgcaccgtggagaagatgcaccatgtcaacgtcaacccagacttcaagatttac
tacaatgccacgtccaacaacgtggggattccccgtaacttcaaggactggaagccaggg
ggcagcatcagctgtgcgaattgcggccaggcctggggcatggagatgatctaccgcagc
gtgacgctgcccatcctctccatcaaaaacttcgtggtggcgacgccggacgggaacaaa
catctcaaacaatggagccgggtgactttcaccatcgaggagtttgactacgtggagtac
tgcagcaggaacttgggcatgtaa
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integrated database retrieval system
