Trachemys scripta elegans (red-eared slider): 117883313
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Entry
117883313 CDS
T07347
Symbol
PASD1
Name
(RefSeq) circadian clock protein PASD1 isoform X1
KO
K09026
neuronal PAS domain-containing protein 2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117883313 (PASD1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117883313 (PASD1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HLH
PAS_9
TED_2
Motif
Other DBs
NCBI-GeneID:
117883313
NCBI-ProteinID:
XP_034638413
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All DBs
Position
9:11536244..11583495
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AA seq
837 aa
AA seq
DB search
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELCTMLQGHGHPLKMDKSTILQRTIDFLQK
QKEITAQTEAGEIRQDWKPSFLSNEEFTQLMLEALDGFLIALTTDGIIIYVSDSVSSLLG
HLPSDLVDQNILNFLPEREQSDVYKLLSPHVLMTDPVAADFLNTEKQIEFCCHLARGSLD
PNEPLTYEYVKFVVDFKYFTHVPTPSCNGFESAIARAFRSATEEQICLVATVRLVTPQFL
KELCNIEEPCEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHADDLELLAR
CHEHLMQFGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHLVVSYAEVRA
ERRRDLGLEESSIELASSSLKSHNSYLDIRQCGNNQETSRDRVSVSSPSSRRSSHTALSD
SASTSSMRHTEASTPTRQSVPMGQQEKASLRLASSGSAQAIVTPQASAEHLTQHHVAQPT
IPSQQAVMPVYHFPAQLGMMHQLKEQLEERTRILQADIKTQQEELHVIKEQLQLVQDSNL
QMLMQQPMPLVFNNVQQQSPRRPSQPQQPGATRQTTAKKSQQQGLMGSKHYSAPHLPSPH
QFLREPCVTSSQVQQQQQHLMRGSQAQQTCLPAQTSISMPLYNSPMVFSQTQPITVSAQL
PTEMSERQQPSDYSQDRSLRMLLDQPVQALMPSANGSNQSSQNSAGRQQAKFVPEQQMLP
PPLQMQPITCSTVRAPAPSPVFTPSVMIPQANFTSHQTQPPVHLHQWPSQQQVQQQHLYL
QMQAPESVQGSQNQRIFQPSHIPQQNTMGYFLQPQQQSHHPQGQSCNLQDLPEMQLP
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatgagaaggacagggcaaagagggcatcacgcaacaaatctgaaaagaaa
aggcgagatcagttcaatgtcctcatcaaagagctctgcacgatgctgcagggtcatggc
caccctctcaagatggacaagtccacaatattgcagaggaccattgacttcttacagaaa
cagaaagaaatcacagcacagaccgaggccggtgagattagacaagactggaagccttcg
tttcttagcaatgaggagttcacccagttgatgttagaggcattagacggatttctcatt
gcacttaccactgacgggattattatttatgtatctgatagtgtctcctctcttcttgga
catttaccgtcagatttggtggaccaaaatatattaaactttctgcctgagcgggaacag
agtgacgtatacaagctcctttctccacatgtgctcatgacagatcctgttgcagctgat
tttctaaacactgaaaagcaaatagagttttgctgccatttagcaagaggaagcttagat
ccaaatgagcccctaacatatgaatatgtgaaatttgtagtggattttaaatattttact
catgtgcctacaccctcctgcaatggctttgaatccgctattgcaagagcattcaggtca
gccacagaagagcagatttgccttgtcgcaactgttcgtcttgttacgccgcagttttta
aaggagctgtgcaacattgaagagccatgtgaagaattcacatcgagacacagtttggag
tggaagtttttattcttggaccacagggccccacctattataggttatttaccctttgag
gttctgggaacgtcaggttatgattattaccacgctgatgacctggagcttctcgctagg
tgccatgaacacttgatgcaatttggaaaaggaaagtcgtgttactacagattcttgacc
aaaggccagcaatggatatggttgcaaacgcactattacatcacgtaccatcagtggaac
tccaaacctgagttcattgtttgtacacaccttgtagttagttatgcagaggttcgagct
gaaagaaggagagatcttggccttgaggagtcatcaatcgaactggcctcttcttctttg
aagagtcacaatagttacctagacatcaggcaatgtggaaacaaccaagaaaccagcagg
gacagagtgtctgtatcctcgcctagctcccggcgatcttcacacaccgcactctccgac
tcagcatccacatcatccatgcggcacacagaggccagcactcccaccaggcaatcagtg
ccgatgggtcagcaggagaaggcgtctctgaggctggcctcgagcgggagcgcacaggca
atagtaactcctcaggcatccgctgaacatctcactcagcaccatgtggcccagccaaca
atcccctcgcagcaagctgtgatgccagtgtaccacttcccagcccagttagggatgatg
catcaactaaaagaacagctggaggagaggacgcgcatactgcaagctgacatcaagaca
cagcaagaagagctccatgttatcaaagagcagctccaactagtgcaagattccaatctg
cagatgctgatgcaacaacctatgcccttagtctttaacaacgtacaacaacagagccca
agaaggccatcccaaccacagcagcctggggcaaccaggcagaccacagccaagaagtct
cagcagcaaggccttatgggatccaaacactatagtgccccacacttaccgtcaccacat
caattcctcagggaaccttgtgtcacttcctcacaggtacagcagcagcagcagcactta
atgagaggcagccaggcccagcaaacatgtctgccagcgcagacaagcatttcgatgccc
ctctacaacagccccatggtgttttcccaaactcagcccatcactgtctctgctcagctg
ccgacggaaatgagcgaaaggcaacaaccgtctgactacagccaagataggagtctaaga
atgttgttagatcagccggtccaagccttgatgcccagtgctaatggcagtaaccagtca
tcacaaaacagtgctggcagacagcaagcaaaatttgttccagaacagcagatgctgcct
cccccattacagatgcagccaattacatgtagcacagtcagggctcctgccccttctcct
gtatttaccccttcagtcatgattccacaggccaacttcacctcccaccagacgcaacct
ccagttcatctccaccaatggccatcccaacaacaggttcagcagcaacatctctacctt
cagatgcaagccccagagtcggtccaggggagtcaaaatcagcgtattttccagccatct
catataccgcagcagaataccatgggctacttcctccagccacagcaacaaagccaccat
ccgcagggtcagtcctgcaacttacaggacttgcctgaaatgcagctgccctga
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