Candidatus Thiodictyon syntrophicum: THSYN_05665
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Entry
THSYN_05665 CDS
T05211
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THSYN_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsy03021
]
THSYN_05665
03400 DNA repair and recombination proteins [BR:
tsy03400
]
THSYN_05665
Enzymes [BR:
tsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THSYN_05665
Transcription machinery [BR:
tsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THSYN_05665
DNA repair and recombination proteins [BR:
tsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THSYN_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AUB80483
UniProt:
A0A2K8U4H5
LinkDB
All DBs
Position
1314883..1319055
Genome browser
AA seq
1390 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKRPTILDVPFLLATQIESYREFLQADAAPKKRLDEGLHAAFKTV
FPIESYSGYAVLEYVSYRLGEPPFDVRECHLRGATYAAPLRVLLRLVIYDKEAPAGAKVV
KDIKEQEVYMGELPLMTETGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATIVLRALGYGVEDILERFFETDTFRFSG
EDVSLDLVPERLRGETVGFDVKIGEQVIVEAGRRVTARHIRELQKAGVERLEVPPDFMVG
RVVARAQVDKATGEVIAEANTALTRELMALLIAKGIDHVETLFVNDLDQGPYISETLRID
PTTTELEAMVEIYRMMRPGEPPTKDAAQNLFHNLFFTPDRYDLSAVGRMKFNRRLGRPSE
EGPGVLYDGRYFSGRTDAFSVALRNENGDTSDIIDALKILVELRNGRGTVDDIDHLGNRR
IRCVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLARERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI
NSLAVYARTNRYGFLETPYRKVEGGRAGMEIDYLSAIEEGNFVIAQANATLDANGLLTDA
LVSCRHLNEFTMKAPDEVQYMDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPT
LRAEKPLVGTGMERAVAKDSGVVVRARRGGAIESVDAARIVVRVNDEEAEPGVPGVDIYT
LTKYTRSNQNTCINQRPLVKPGDSVAKDDVLADGPSTDMGELALGQNLRVAFMPWNGYNF
EDSILISERVVQEDRFTSIHIEELTCLARDTKLGPEEITSDIPNVGESALSKLDESGIVY
VGAEVRDGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRLPSGMTGTVVDVQ
VFTRDGVERDKRAQQIQDQELDRVRKDFADQARIMENDTFQRVERMLIGKVADGGPGTLK
PGSKITKTYLADLIEKGSRDRWFEIRMHSEEVAVQLEAVANQIKLQREEFRDRYEVKKRK
IASGDDLAPGVLKMVKVYVAVKRRIQPGDKMAGRHGNKGVISKVVPVEDMPFSADGEPVD
IVLNPLGVPSRMNVGQILETHLGWAANGLGVKIERLLRSQTAVAELREFLDKVYNTSGRK
EDLASFTDEEILELSRNLVKGVPLATPVFDGATEDEIRYMLALAERDNTAQGIPCGQSLL
RDGRTGDPFERPVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAGYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRS
LGINIELEQD
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcgttcaccgaaaaaaagcgcatccgtaaagacttcggcaagcgtccgacg
atcctggacgtgcccttcctcctggcgacccagatcgagtcctaccgcgagttcctgcag
gccgatgcggcgcccaagaagcggctggacgaggggctgcatgcggccttcaagaccgtg
ttcccgatcgagagctactcgggctacgcggtgctggaatatgtgagttaccgtcttggg
gagccgcccttcgacgtgcgcgaatgccacctgcgcggggcgacctacgctgcacccctg
cgcgtactgctgcgcctcgtgatctacgacaaggaggcgccggccggcgccaaggtggtg
aaggacatcaaggagcaggaggtctacatgggcgaactgccgctcatgaccgagaccggc
accttcatcatcaacggcaccgagcgggtcatcgtctcccagctccaccgctccccgggc
gtcttcttcgaccacgacaagggcaagacccactcctcgggcaagctcctgttctcggcg
cgggtgatcccctaccgcgggtcctggctggacttcgagttcgaccccaaggacaacgtc
ttcgtgcgtatcgaccggcgccgcaagctgccggcgaccatcgtcctgcgtgccctgggg
tacggggtcgaggatatcctcgagcgcttcttcgagaccgataccttccgtttctcgggc
gaggacgtctccctggacctggtgcccgagcggctgcgcggcgagaccgtcggtttcgac
gtgaagatcggcgagcaggtgatcgtggaggccggccggcgcgtcaccgcccggcatatc
cgcgagttgcagaaggccggtgtggagcgcctcgaggtgcccccggacttcatggtcggc
cgtgtggtggcgcgcgcccaggtggataaggcgaccggcgaggttatcgccgaggcgaac
accgcgctcacccgcgagctgatggcgcttctgatcgccaagggcatcgatcatgtcgag
accctgttcgtcaacgatctggatcagggaccctatatctccgagaccctgcgcatcgac
ccgaccaccaccgaactggaggccatggtcgagatctaccggatgatgcgccccggcgag
ccgcccaccaaggacgcggcccagaacctcttccacaacctctttttcaccccggaccgc
tatgacctgtccgcggtcgggcgcatgaagttcaaccgccggctcgggcgcccctccgag
gagggcccgggcgtgctctatgacgggcgctatttcagcggccggaccgacgccttctcg
gtcgccctgcgcaacgagaacggtgacacgtccgacatcatcgacgcgctcaagatcctg
gtggaactgcgcaacggccgcggcaccgtggacgatatcgaccacctgggcaaccggcgc
atccgctgtgtcggcgagatggcggagaaccagttccgggtcggtctggtgcgggtcgag
cgcgcggtcaaggagcgcctgtcgctcgccgagtccgagggtctgatgccccaggagctg
atcaacgccaagccggtgtcggccgcaatcaaggagttcttcggctccagccaactctct
cagttcatggaccagaacaacccgctctcggaggtcacccacaagcggcgcgtctccgcg
ctcggccccggcggactcgcgcgtgagcgcgccggcttcgaggtgcgtgacgtgcatccg
acccactatggccgggtctgcccgatcgagaccccggaaggcccgaacatcggcctgatc
aactcgctcgcggtctatgcccgcaccaatcgctacggcttcctggagaccccctaccgc
aaggtcgaaggcggtcgggccggtatggagatcgattatctctccgccatcgaggagggc
aatttcgtcatcgcccaggccaatgcgaccctggacgcgaatggtctcctgaccgacgcc
ctggtgtcctgccgacacttgaacgagttcaccatgaaggccccggacgaggtccagtat
atggacgtctccccgcgccagatcgtctcggtggcggcctcgctgatccccttcctggag
cacgacgacgccaaccgcgccctcatggggtccaacatgcagcgccaggcggtgccgacg
ctgcgcgccgagaagcccctggtgggcaccggcatggagcgggcagtggccaaggactcg
ggcgtggtggtgcgggcgcgccgcggcggtgccatcgaatcggtcgacgccgcgcgaatc
gtggtgcgggtcaacgacgaggaggccgagccgggggtgcctggggtcgatatctatacc
ctcaccaagtacacgcgctccaaccagaacacctgcatcaaccagcgtccgctggtgaag
cccggggatagcgttgccaaggacgacgtactggctgacggcccctccaccgacatgggc
gagctggccctgggccagaacctgcgcgtcgccttcatgccctggaatggctacaacttc
gaggactcgatcctgatctccgagcgggtggtccaggaggaccgtttcaccagcatccat
atcgaggagctgacctgtctggcccgcgacaccaagctggggccggaggagatcacgagt
gatatccccaacgtcggcgagtcggccctgtcgaagctcgacgagtcgggcatcgtctat
gtgggtgccgaggtccgcgacggcgacatcctggtcggcaaggtgacccccaagggcgag
acccaactcacccccgaggaaaagctgctgcgcgccatcttcggcgagaaggcgtccgac
gtgaaggacacctcgctgcggctgccctccggcatgaccggcaccgtggtggacgtgcag
gtcttcacccgcgacggggtggagcgcgacaagcgcgcccagcagatccaggaccaggaa
ctcgaccgggtgcgcaaggacttcgccgaccaggcgcgcatcatggagaacgacaccttc
cagcgggtggagcggatgctgatcggcaaggtcgccgacggcggccccggcaccctcaag
cccggctccaagatcaccaagacctatcttgcggacctcatcgagaaggggtcgcgtgac
cgctggttcgagatccgcatgcacagcgaggaggtggccgtgcagctcgaggccgtcgcc
aaccagatcaagctgcagcgtgaggagttccgcgaccgctacgaggtcaagaagcgcaag
atcgcgagcggcgatgatctcgcccccggcgtgctcaagatggtcaaggtctatgtcgcg
gtcaagcggcgtatccagccgggcgacaagatggccgggcgccacggcaacaagggtgtc
atttccaaggtcgtaccggtggaggacatgcccttctccgccgacggcgagccagtcgac
atcgtgctcaacccgctcggtgtgccgtcgcgtatgaacgtgggccagatcctggagacg
cacctgggctgggcggccaatggtctcggggtcaagatcgagcgcctgctgcgctcgcaa
acggcggtggccgagttgcgcgagttcctggacaaggtctacaacaccagtggacgcaag
gaggatctcgcgagcttcaccgacgaggaaatcctggaactgtcgcgcaacctggtcaag
ggcgtgccgctcgcgaccccggtcttcgacggcgccacggaggacgagatccggtacatg
ctggcgctcgccgagcgcgacaacaccgcccagggcatcccctgcggccagagcctgttg
cgtgacggccgcaccggcgaccccttcgagcgcccggtgaccgtcggctatatgtacatg
ctgaagttgaaccacctggtcgacgacaagatgcacgcccgctccaccggcccctacagc
ctggtgacccagcagcccttgggcggcaaggcgcagttcggcggtcagcgcttcggggag
atggaggtctgggccctggaggcctatggcgcgggctatacgctgcaggagatgctcacg
gtcaagtccgacgatgtgaacgggcgcaccaagatgtacaagaacatcgtcgatggcgac
caccgcatggaggccgggatgccggagtccttcaacgtgctggtgaaggagatccgctcg
ctcgggatcaacatcgaactggaacaggactga
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