Thermus thermophilus JL-18: TtJL18_1910
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Entry
TtJL18_1910 CDS
T02009
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttl
Thermus thermophilus JL-18
Pathway
ttl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TtJL18_1910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttl03021
]
TtJL18_1910
03400 DNA repair and recombination proteins [BR:
ttl03400
]
TtJL18_1910
Enzymes [BR:
ttl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TtJL18_1910
Transcription machinery [BR:
ttl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TtJL18_1910
DNA repair and recombination proteins [BR:
ttl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TtJL18_1910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AFH39771
UniProt:
H9ZTW1
LinkDB
All DBs
Position
complement(1765048..1769622)
Genome browser
AA seq
1524 aa
AA seq
DB search
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSA
TELEQVLYFSKYIVLDPKGAVLNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK
DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE
VLAELPEPYLFRAEEEGVVELRELEEGAFLVLRQEDEPVATYFLPVGMTPLVVHGEIVEK
GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR
VEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDV
LADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEE
MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL
RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKK
MEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL
VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAK
PSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLK
YVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI
QLDVPQEKNSLKDLVYQAFLRLGIEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK
KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPL
YVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKG
GADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADI
EAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV
CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI
ELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVE
AGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVE
VTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF
QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARR
EAVEAKERPAARRGVKREQPGKQA
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaggttcgtaaggttcgcatcgctttggcctccccggagaagatccgctcc
tggagctacggggaggtggagaagcccgagaccatcaactaccgcaccctcaagcccgag
cgggacggcctctttgacgagcgcatcttcggccccatcaaggactacgagtgcgcctgc
ggcaagtacaagcgccagcgctttgagggcaaggtgtgcgagcggtgcggcgtggaggtg
acgaagagcatcgtccgccgctaccgcatgggccacattgagctcgccacccccgctgcc
cacatctggttcgtcaaggacgtcccctccaagatcgggaccctcttggacctctccgcc
accgagctggagcaggtcctctacttcagcaagtacatcgtcctggaccccaagggggct
gtcctgaacggggtcccggtggaaaagcgccagctcctcaccgacgaggagtaccgggag
ctccgctacggcaagcaggagacctaccccctgccccctggggtggacgccctggtgaag
gacggggaggaggtggtgaagggccaggagcttgcccctggggtggtgagccgcctggac
ggcgtggccctctaccgcttcccccgccgcgtccgggtggagtacgtgaagaaggagcgg
gccgggctcaggcttcccctcgccgcctgggtggagaaggaggcctacaagcccggcgag
gtcctcgccgagctccccgagccctacctcttccgggccgaggaggagggcgtggtggag
cttagggagctggaggaaggggccttcctcgtcctccgccaggaggacgagccggtggcc
acctacttcctccccgtgggcatgacgcccctcgtggtccacggggaaatcgtggagaag
ggccagcccctggccgaggccaagggccttctccgcatgccccgccaggtccgggccgcc
caggtggaggcggaggaggagggggagacggtctacctcaccctcttcctggagtggacg
gagcccaaggactaccgcgtccagccccacatgaacgtggtggtccctgagggggcccgg
gtggaggcgggggacaagatcgtggccgccattgaccccgaggaggaggtcatcgccgag
gccgagggggtggtccacctccacgagcccgccagcatcctggtggtcaaggcccgggtc
tacccctttgaggacgacgtggaggtctccaccggggaccgggtggccccgggggacgtc
ctcgccgacgggggcaaggtcaaaagcgacgtctacggccgggtggaggtggacctggtc
cgcaacgtggtccgggtggtggagtcctacgacattgacgcccgcatgggggccgaggcc
atccagcagctcctcaaggagctggacctcgaggccctggagaaggagcttctggaggag
atgaagcacccctcccgggcccggcgggccaaggccaggaagcgcctggaggtggtgcgg
gccttcctggactcggggaaccggcccgagtggatgatcctcgaggccgtccccgtcctt
cccccggacctccggcccatggtccaggtggacggcggccgcttcgccacgagcgacctc
aacgacctctaccggcgtctcatcaaccgcaacaaccgcctgaagaagcttttggcccag
ggtgcccccgagatcatcatccgcaacgagaagcggatgctgcaggaggcggtggacgcc
ctcctggacaacggccgccgcggcgctcccgtgaccaaccccggctccgaccggcccctc
aggagcctcaccgacatcctctccggcaagcagggccgcttccgccagaacctcttgggc
aagcgggtggactactcgggccgaagcgtgatcgtggtggggccccagctcaagctccac
cagtgcggcctgcccaagcggatggccctggagctctttaagcccttcctcctcaagaag
atggaggagaagggcatcgcccccaacgtcaaggcggcgcggcgcatgctggagcgccag
cgggacatcaaggacgaggtgtgggacgccctagaggaggtcatccacggcaaggtggtc
ctcctgaaccgcgcccccaccctgcaccgcctgggcatccaggccttccagcccgtcttg
gtggaggggcagtccatccagctccaccccctggtgtgcgaggccttcaacgccgacttt
gacggggaccagatggcggtccacgtgcccctctcctccttcgcccaggccgaggcccgc
atccagatgctctccgcccacaacctcctctccccggcctccggggagcccctggccaag
cccagccgggacatcatcctgggcctctactacatcacccaggtgcgtaaggagaagaag
ggggcgggcctggagttcgccacccccgaggaggccctggccgcccacgagcggggagag
gtggccctgaacgcccccatcaaggtggcgggcagggagaccagcgtgggccggctcaag
tacgtcttcgccaaccccgacgaggcccttctcgccgtggcccacggcatcgtggacctg
caggacgtggtcaccgtccgctacatgggcaagcggctggagacgagcccgggccgcatc
ctcttcgcccgcatcgtggccgaggcggtggaggacgagaaggtggcctgggagctcatc
cagctggacgtgccccaggagaagaactccctcaaggacctggtctaccaggccttcctg
cgcctgggcatagagaagaccgcccgcctcctggacgcccttaagtactacggcttcacc
ttctccaccacgagcggcatcaccatcggcatcgacgacgccgtgatcccggaggagaag
aagcagtacctggaggaggccgaccgcaagctcctccagattgagcaggcctacgagatg
ggcttcctcaccgaccgggagcggtacgaccagatcctccagctctggaccgagaccacg
gagaaggtcacccaggcggtcttcaagaactttgaggagaactaccccttcaaccccctc
tacgtcatggcccagtccggggcccggggcaacccgcagcagatccgccagctctgcggc
atgcgcggcctcatgcagaagccctcgggcgagacctttgaggtgccggtgcgctcctcc
ttccgcgagggcctcaccgtcttggagtacttcatctccagccacggggcccggaagggc
ggggcggacaccgccctccgcaccgccgactccggctaccttacccgcaagctcgtggac
gtgacccacgagatcgtggtgcgggaggcggactgcggcaccaccaactacatctccgtc
cccctcttccagcccgacgaggtgacccgctccttgcgcctgaggaagcgcgcggacatt
gaggcgggcctctacgggcgcgtcctggcccgggaggtggaggtcctgggggtgcgcctc
gaggagggccgctacctctccatggacgacgtccacctcctcatcaaggccgccgaggcc
ggggagatccaggaggtgcccgtccgcagccccctcacctgccagacccgctacggggtc
tgccagaagtgctacgggtacgacctctccatggcccggcccgtctccatcggcgaggcg
gtgggcatcgtggccgcccagtccatcggcgagcccggcacccagctcaccatgcgcacc
ttccacacgggcggcgtggccggggccgcggacatcacccagggtctgccccgcgtcatc
gagctctttgaggcccgccgccccaaggccaaggcggtgatctccgagattgacggcgtg
gtgcgcattgaggagacggaggagaagctctccgtcttcgtggagtccgagggcttctcc
aaggagtacaagctccccaaggaggcgcgccttctcgtcaaggacggggactacgtggag
gcgggccagcccctcacccgcggggccattgacccccaccagcttttggaggccaagggc
cccgaggcggtggagcgctacctggtggaggagatccagaaggtctaccgggcccagggc
gtgaagctgcacgacaagcacattgagatcgtggtccggcagatgatgaagtacgtggag
gtcaccgaccctggggatagccgcctcttggagggccaggtcctggagaagtgggacgtg
gaggccctgaacgagaggctcatcgccgagggcaagaccccggtggcctggaagcccctc
ctcatgggggtcacgaagagcgccctctccaccaagagctggctctccgccgccagcttc
cagaacaccacccacgtcctcaccgaggcggccatcgccgggaagaaggacgagctcatc
ggcctcaaggagaacgtcatcctgggccgcctgatccccgcgggcacgggttcggacttc
gtccgcttcacccaggtggtggaccagaagaccctgaaggccattgaggaggcccgcagg
gaggcggtggaggccaaggagcgacccgccgcccggcgcggggtcaagcgggagcagccc
ggaaagcaggcttaa
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