Thunnus thynnus (Atlantic bluefin tuna): 137184756
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Entry
137184756 CDS
T11154
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137184756 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137184756 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137184756 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tty00535
]
137184756 (col9a3)
Proteoglycans [BR:
tty00535
]
Extracellular matrix (ECM) proteoglycans
Others
137184756 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
137184756
NCBI-ProteinID:
XP_067448832
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All DBs
Position
6:23302675..23318059
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AA seq
678 aa
AA seq
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MAVFSALWVLLLCQLLTSSSAQRPGPRGSSGPPGPPGEPGRDGTDGKPGPAGLQGKAGPK
GKAGIPGGLGKPGLPGLPGVDGLTGPDGPAGKDGPAGEAGDAGPAGPPGPPGRGRPGAPG
LPGTNGLPGGVGPQGPAGAEGLAGLPGPPGPDGPPGLPGTLHDLNGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGEKGEPGKDGEKGDAGPPGPPGIPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKPGIAGIIGKTGDAGEKGPQGFKGPKGEIGKIGPKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLQGKSGAKGSKGEVGDPGKAGETGPSG
EPGIPGDIGIPGERGIAGPRGVAGAIGPAGNIGPQGVKGFQGVKGALGDPGLPGPTGIRG
EFGDRGPVGASGPKGDMGVAGSDGLPGENGEPGHFGPVGQKGESGKRGELGPKGVTGPQG
ELGARGAPGKEGPMGFQGEQGLPGIPGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGMVGRPGRAGPPGKPGVTGSIGHPGSRGPPGYRGLPGELGDPGPRGDVGEAGDK
GPVGKAIEGPTGDQGYPGLPGVPGIVKDGRDGSPGDPGEPGEPGRVGRTGHQGTPGICDT
SACQGASVAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgttctccgctctttgggtgctcttactgtgccagcttttgacatcatcctca
gcccagaggccaggccccagaggatcgtctgggccaccaggacccccaggggaaccagga
agggatggcactgatggcaaacctggacctgctggactacaagggaaagcaggtcctaaa
gggaaagcaggaataccaggaggacttggaaaaccaggcctgccaggacttccaggggtg
gacggtttgacaggtcctgatggtcctgctgggaaggatggacccgcaggggaggcaggt
gatgctggacctgctgggccacctggacctcctggcagagggagaccaggagctccaggg
ttacctggaaccaacgggttgccaggcggagtcggacctcagggtccagcgggtgctgag
ggtcttgcaggacttcccggacctcctggccctgatggaccaccaggtcttcccggtact
cttcatgatctcaacggtgaccttctgtgtcctgcaatctgccctcctggtccctctggt
cctcctgggatgccaggattcaagggtcacacaggtcataaaggagaaaagggagagcct
gggaaagatggggagaagggtgatgctggtccacctggtccaccaggtattcctggtaca
gtgggtctgcagggcccacgtggtctaagaggtttgcagggcccaatgggatctgtagga
gacagaggcctgccaggattcagaggaaagcccggcattgctggcatcattggaaagaca
ggtgatgctggagaaaaggggccacaaggcttcaaaggtcccaaaggtgaaattggtaaa
attggtcctaaaggaggtcccggtggagcaggacccaaaggggagcctggtattcctggc
agggatggcaaagatggtacaccaggattggacggcgagaagggtgatcccggacgccat
ggagtagttggagagaaaggaccaaacggccttcctggtctacaaggaaagagtggcgcc
aagggatccaaaggagaagtcggtgatccagggaaagctggagagacgggaccctctgga
gagccaggtattcctggtgacattggcatcccaggagagagggggatagcaggacccaga
ggagtagctggagctattggaccagcaggcaacattggacctcagggagtgaaaggcttc
cagggtgtaaaaggagccttgggggacccaggtcttccaggtccaacaggaatccgtggg
gagtttggagacaggggtccagttggagcttctggacctaaaggagacatgggtgtggca
ggaagtgatggtttaccaggagagaacggagaacctggtcattttggaccagttggacaa
aagggagagtcagggaaacggggtgaactgggacctaaaggtgtgacaggtccacaagga
gagctcggagcaagaggggccccaggaaaagaaggaccaatgggcttccaaggggaacaa
ggtctgcctggaattccaggaaagacaggtgtacccggtaaactggcaagcgaacagcac
atcagagagctgtgtggctcaatgatcgatgatcagattgcacagctggccgctaacctt
cgaagacccctgtcccctggaatggtgggccgtcctggacgtgctggacctccaggaaag
ccaggagttactggctctattgggcatccgggttcccgtggaccaccagggtacagaggc
ctgccaggagagcttggagatcctggtcccagaggtgatgtcggtgaggcaggtgataag
ggacccgttggcaaagccattgaagggcccactggagaccaaggatacccaggtctgcca
ggagtacctggaattgtcaaagatgggcgtgatggatctccaggagatccaggtgagcct
ggagagccaggcagggtaggtaggactgggcaccagggcactcctggaatctgtgacaca
tcagcatgccagggagcatcagtcgctgggaaatcatccaaccccaaaaaccattaa
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