Thunnus thynnus (Atlantic bluefin tuna): 137195929
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Entry
137195929 CDS
T11154
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tty03019
]
137195929 (smg8)
Messenger RNA biogenesis [BR:
tty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137195929 (smg8)
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
DUF2794
Motif
Other DBs
NCBI-GeneID:
137195929
NCBI-ProteinID:
XP_067464753
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Position
13:complement(22510242..22519504)
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AA seq
926 aa
AA seq
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MKEANMALPVSVGTLLQADLQEDAAYRDDGLCVVGIFGKSNMQAGPLKESLINSLADKHI
FSLFGAPEEDGGTADCSSHIQALYSQEDRVLYLLLSSVCDSRQLLRACRSLSAGTGHSDA
HDFWKGLDRQHCLHLLYMFSVCHVLLLVHPNQTFDVSYDRLFRALDALRQKVLPLIRAAI
KDCPVSKEWKLNCRPCPPRLLFVFQMNGTLKVSANSSESGGNPDKPKKHSPRRRLQHALE
DQIYRIFRKSRVLTNQSSNCLFTVPANQAFVYVIPAVDEDPVGALLGQLRSNCILCDQDS
STSVAGPRRYQQMRRSVRQPSYIGDTGSMSMGSQLVDCSLKEFLWQHVELVLTKKGFDDS
VGRNPQPSHFELPTYSKWVQVASRLHQVLISNTEEEISELATKVQSQLKVLEGFLDADTK
FSENRCQKALPLAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGVAFQRYALQVHED
CYKFWSNGHQLCEERSLTDQHCVHKFHLLPQPGEKPDVDRNPPILNHNSRGRSTSSCNCG
RKQAPREDPFDIQAANYDFYQMLEEKCCGKLERIEFPVFQPSTPDPAPACNQAQRLPSEA
SGSGEAERLKEPSTAQSHTPGDTSLSLALSLGQSTDSLGPYGDGEGTETQVQQKRPSLVD
RQPSTVEYLPGMVHSGCPKGLLPKFSSWSLVKLGPAKSYNCHTGLEQPGFLPGSSFLLPW
DLVIRSRSEEDTGLVEPLDGGTSSWPAPNKSLVGKRGSTGGLGRSRRRDDMARVFVGFEY
EDSRGRRFISSGPDKIVKVLGPGGAKDPATRVLNTDMPLYIPSPSQGRGLKAHFAQLTRL
FIVVPDAQLEVTLNPQVQPGPPPCPVFHPEQTDLVLPPDGLWVLRFPYSYLTDRGPCYPP
KENQPLNNYKVLRGILKATTANPPPQ
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagcaaacatggctctccctgtgagtgtggggactctgctgcaggcggacctc
caggaggacgctgcgtaccgggacgacggcctgtgtgtcgtcggtattttcggtaagagc
aacatgcaggccggcccgctgaaggagtctctcatcaacagtctggcggacaaacacatc
ttctctctgttcggagcaccggaagaggacggcggcaccgcggactgcagcagccacatc
caggctctgtacagccaggaggaccgggtgctgtacctgctgctctcctccgtgtgcgac
agccgtcagctgctgcgggcctgccggtctctgagcgctggcaccggccactccgacgcc
cacgacttctggaaaggccttgacagacagcactgcctccacctgctctacatgttctcg
gtgtgccacgtcctcctgctcgtccatcccaaccagacctttgacgtgagctacgaccgg
ctgttcagagccctggacgccctgcggcagaaggtcttgcctctgatccgagctgccatt
aaagactgcccggtgtccaaagagtggaagctgaactgtcggccctgccctccgcgcctg
ctcttcgtcttccagatgaacggcactctgaaggtctctgcaaacagttcagagtctgga
ggaaaccctgacaagcccaaaaagcactctcccaggaggaggctgcagcacgccctggag
gaccaaatttatcgcatcttccgtaaaagccgagtcctgaccaaccaaagcagcaactgc
ttgttcaccgtgccggccaaccaagcatttgtttacgtgatcccagcggttgacgaggat
cctgtgggggccttgcttggccagctgcgatccaactgcatcttgtgtgaccaagactcc
agcacgtcagtggcaggaccgaggcgttatcagcagatgcgacgttcagttcggcagccc
agctacattggagacacaggcagcatgtcgatgggcagtcagctggtggactgcagcttg
aaggaattcctctggcagcacgtggagctggtgctgaccaagaaaggctttgatgacagc
gtcggccgcaacccacaaccatcacactttgagctgccgacctactccaaatgggttcag
gtcgcatccagactccaccaagtcctaattagcaacacagaagaagaaatatctgagcta
gccaccaaagtgcaaagccagctgaaggttttggagggctttctcgatgccgacacaaag
ttctctgagaacaggtgccagaaagctttgccactggctcacagcgcttaccagtccaac
cttccccataattacaccacaacggtgcacaaaaaccagctggcgcaggcactgcgagtg
tacagccagcatgcccgtggtgtggctttccagcgctacgccctgcaggttcatgaggac
tgctacaagttctggagcaacggccaccagctctgtgaggagcgaagcctcactgaccaa
cactgtgttcacaagttccacctactgcctcagccaggagagaagccagacgtggatcgc
aaccctcccatcctgaaccacaacagcagggggcgctccaccagctcctgtaactgtggg
aggaaacaggctcctcgtgaggatccgtttgacatccaggccgccaactatgacttctac
cagatgctggaggagaaatgctgtgggaagctagagaggattgaattccctgtgttccag
cccagcactcctgacccagccccggcctgcaaccaagcccagcgactcccatctgaggcg
tcaggctctggtgaggcagagaggctgaaggagccaagcactgcccagagccacacacct
ggagacaccagcctcagcctggctctcagtctcggccagtccactgacagcctgggacct
tatggggacggggaaggaacagaaactcaagtccagcaaaagaggccaagtctcgtcgac
cgccagccctccactgtggagtacctgcctggtatggtgcactctggctgccccaagggc
ctgctacctaagttctccagctggtcgctggtcaaactgggcccagccaagtcatacaac
tgccacactggtctggagcagccaggcttcctacccggttcttccttcctcttgccgtgg
gacttggtgatccgctctcggtcggaggaggatacgggactggtggagcctctggatgga
ggcacctcctcatggccagcccccaacaagagcctcgtgggaaagcgagggagcaccgga
gggcttggcaggagtcgcaggagggacgacatggctcgggtctttgtgggctttgagtat
gaagacagcagaggacgacggttcattagctccgggcctgataaaatagtgaaggtgctg
gggccggggggtgccaaggatcctgctaccagggtgctaaacacagacatgccgctgtac
atcccctccccttcccagggccgcggcctgaaggctcacttcgcccagctgactcgcctc
tttattgtggtgcccgacgcccagctggaggttacactcaaccctcaggtccagcctggt
cctcctccctgcccagttttccatccagagcagacagatttagtgttgcctcctgatggt
ctctgggtgctgcggttcccttattcctacttgacagatcgcggcccctgttaccccccc
aaggagaatcagcctctcaataactacaaggtgctgcgaggaatcctgaaggccacgacc
gcaaaccctcctccacaatga
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