Tenuifilum thalassicum: FHG85_04445
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Entry
FHG85_04445 CDS
T06728
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ttz
Tenuifilum thalassicum
Pathway
ttz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FHG85_04445 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttz03021
]
FHG85_04445 (rpoB)
03400 DNA repair and recombination proteins [BR:
ttz03400
]
FHG85_04445 (rpoB)
Enzymes [BR:
ttz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FHG85_04445 (rpoB)
Transcription machinery [BR:
ttz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FHG85_04445 (rpoB)
DNA repair and recombination proteins [BR:
ttz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FHG85_04445 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QKG79540
UniProt:
A0A7D4BAP0
LinkDB
All DBs
Position
1070117..1073941
Genome browser
AA seq
1274 aa
AA seq
DB search
MSQNNTNARINFSKTQSHFDYPDFLEVQLKSFMEFFKLGSTPEERKNEGLYKVFQENFPI
TDTRNNFVLEFLDYYVDPPRYTIEECIDRGLTYSVPLKAKLKLYCTDPEHEDFDTVVQEV
YLGTIPYMTPKGSFIINGAERVVVSQLHRSPGVFFGQSLHPNGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILQIFDLAEEVKVSKVSLNKVVGQR
LAARVLKSWIEDFVDEDTGEVVSIERNEVVLDRETVIEKEHIDLIIDSGVKSILVHKESQ
SISDYAIIYNTLQKDPSNSEKEAVVHIYRQLRNSEPPDEATARDVIDKLFFSDKRYDLGD
VGRYRINKKLNLNIPPDVKVLTREDMIEIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQ
MAAQFGVGLARMARTIRERMNVRDNEVFTPIDLINSKTLSSVINSFFGTNQLSQFMDQTN
PLAEMTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
RVNDLGFIETPYRKVENGKVGLSDDDIVYLSAEEEEAKIIAQANAPLEEDGRFQNPRVKA
RYEGDFPLAESETIDLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLQPE
SPIVGTGLEGQVVKDSRTQVVAEEDGVVEYVDADEIVVRYNKTEEELFVSFDPEVKRYKL
PKFKKTNQSTSVTLKPIVTKGQKVTKGQILTEGYATRGGELALGRNLKVAFMPWKGYNFE
DAIVISERLLRDDVFTSIHIDEYILEVRDTKRGMEELTADIPNVSEEATKDLDENGMIRI
GANVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLYGVVIDKML
FSRSIKDGKESRKGKSGDKAILEKLDNEFNKHVADLKNRLVDKLFSLINGKTSQGVYDAY
DQEVVPRGVKFTQKILSEIDYMNVNPNKWTTDKAKNELIKAVIQNYILKWKEYDAEYKRK
KFNATIGDELPAGIMQLAKVYIAKKRKITVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGT
PVDIVLNPLGVPSRMNLGQIYETVLGWAGQKLGIKFSTPIFDGATLEDITKYTDQAGLPR
FGKTYLYDGGTGERFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFG
GQRFGEMEVWALEAFGASHILQEILTIKSDDVVGRAKAYESIVKGEPMPEPGIPESLNVL
LHELRGLGLSVKMD
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaataatactaacgcgcgaataaatttctccaagactcaaagccatttcgat
taccccgactttctggaggtacagcttaagtcgttcatggagttttttaaacttggctca
acacctgaagagcgcaagaatgaaggcttatataaagttttccaagaaaattttcctatt
actgacactagaaacaattttgtacttgagtttctagactactatgtcgatcctccaaga
tataccattgaggagtgcatagatagaggtctaacttatagtgtcccattaaaggcaaaa
ctaaaactttattgtaccgatcctgagcatgaggattttgataccgtggttcaggaggtt
tatcttggtacaatcccatacatgacacctaagggaagctttataatcaatggggcagag
cgtgttgtagtttctcagctacatcgttccccgggggttttctttgggcaaagtttacat
ccgaacggtacaaaactctattccgctagaattattccttttaaaggatcctggattgag
tttgctaccgacatcaataatgtgatgtatgcttacatcgatagaaaaaagaaattacca
gtaactactcttttacgtgcaatcgggtttgaaaccgataaagatattctacaaatattt
gacttagccgaggaggtaaaagtttccaaggttagcttgaacaaagttgttggccaacgc
ttggctgcgcgtgttctaaagagctggatagaagattttgttgatgaggataccggagaa
gttgtatctattgaacgtaacgaggtagtacttgatcgtgaaacagttattgaaaaggaa
catatcgatcttataattgactctggtgtcaagtcaattcttgttcataaggaatcgcag
agcatttctgattatgccataatttataatacgctgcaaaaagacccaagtaactctgaa
aaagaggctgtggttcatatttacaggcagctacgtaactccgaaccacccgatgaagca
actgctcgtgatgttatcgataagttattcttttccgataaacgttacgacctgggcgat
gtaggacgttaccgtataaacaaaaaattaaatctaaatattccccctgatgttaaggta
ttaactagggaggatatgatcgaaatcatcaagtacctcattgagcttattaactcaaag
gcagaggttgatgatatcgaccatctaagtaatcgtagggttagaactgttggcgagcaa
atggctgcccaatttggggtaggtttggctcgtatggcacgtactattcgcgaacgcatg
aatgtccgcgataacgaggttttcaccccaattgaccttatcaattcaaaaactttatct
tctgtaataaactcgttctttggaactaatcagctatcccagtttatggatcaaaccaat
ccattagctgagatgactcacaaacgccgcttatcggcactaggacctgggggtcttacc
cgtgagcgtgctggtttcgaagttcgagatgttcactatacacactatggacgcctctgt
cctattgaaacaccagaaggcccaaatattggtcttatttcttcgctttgtgtgtttgca
agggtaaatgatcttggttttatagagacaccttatcgtaaagttgaaaacgggaaggtt
ggtctatccgatgacgatatcgtttaccttagtgccgaagaggaagaagctaaaataata
gcccaagccaatgcacctctcgaagaggatgggcgtttccaaaatcctcgcgttaaagct
agatacgagggcgacttcccattggctgaaagtgaaaccattgatttaatggacgttgcg
ccaaaccagatcgcatcaattgctgcatcgttaattccattccttgagcatgatgatgct
aaccgtgctttgatgggatcgaacatgatgcgccaggctgtgccattgctccaacctgaa
agccctattgttggtacaggtttagagggtcaagtggttaaagatagccgtactcaagta
gtagcagaagaggacggtgttgttgagtatgtagatgccgatgagatagttgtaagatat
aataaaaccgaagaagagctatttgttagcttcgatcccgaggttaaacgatataaatta
cctaagttcaagaaaaccaaccaaagtacttcagttacacttaaacctatagttactaag
ggacagaaggttactaagggacaaatattaactgaggggtatgcaacccgaggcggtgag
ctagctttaggtcgtaacttgaaggttgcctttatgccctggaagggttacaactttgag
gatgctattgtaataagtgaacgtttacttagagatgatgttttcacttctatacatatt
gatgagtacatccttgaagtgcgtgatacaaaacgagggatggaagagctaaccgctgac
attccaaacgtgtccgaagaagcaactaaagatttggatgagaatggaatgatcaggatt
ggagcaaacgtcaagcctggtgacatcctaattggtaagattactcctaagggggaatct
gatcctactcccgaagaaaaacttcttagggcaatttttggcgacaaggcaggtgacgtt
aaggatgcatcgcttaaagcttcgccttcactttatggcgttgttatagataaaatgctg
ttctctcgttccatcaaggatggcaaggaatcgagaaaaggtaaatcgggcgataaagct
atacttgaaaaactcgataatgagtttaacaagcatgtagccgacctgaaaaacagattg
gttgataaacttttctcgctgataaatggtaaaacaagccaaggtgtttacgatgcctac
gatcaagaagttgtaccacgcggggtgaagtttacacaaaagatcttatccgagatcgat
tacatgaacgtaaaccctaataagtggacaaccgataaggctaaaaacgagcttataaaa
gcagtaatacagaactacatccttaaatggaaggagtatgatgctgagtataagcgcaag
aaatttaatgctacaataggtgatgagcttccagcaggtattatgcagctagcaaaggtt
tatattgctaagaagcgcaaaatcactgttggagataagatggctggacgacacgggaac
aaaggtattgtagctaaaattgtacgcgacgaggatatgcctttccttgaggacggaaca
ccagttgacatagttctaaatcctctgggggtgccttcgcgtatgaaccttggacagatt
tatgaaactgttttgggttgggctggtcaaaaacttggtatcaaatttagcactccaatt
tttgatggtgctactttggaagatattaccaagtataccgatcaagcaggcttaccacga
tttggtaaaacttatctatacgatggaggtacaggcgagcgcttcgaccaaccagcaacc
gtaggggtaatatacatgctaaaactcggtcatatggttgatgacaagatgcatgctcgt
tcaattggaccatactcacttataacccaacaacctttaggtggtaaagcccaatttggt
ggacagcgttttggtgagatggaggtatgggctcttgaggcatttggtgcatcgcatatc
cttcaagaaatactcaccattaagtccgacgatgttgttggtagggctaaggcatatgag
tcgattgttaagggtgaaccaatgcctgaacctggtatcccagaatcgcttaatgttctt
ttacatgaacttcgcggtttaggtttaagtgtgaaaatggattaa
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integrated database retrieval system
