Triticum urartu (red wild einkorn wheat): 125507619
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Entry
125507619 CDS
T08232
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125507619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tua03019
]
125507619
Messenger RNA biogenesis [BR:
tua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125507619
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125507619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
Motif
Other DBs
NCBI-GeneID:
125507619
NCBI-ProteinID:
XP_048528106
LinkDB
All DBs
Position
5:complement(647370114..647386279)
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AA seq
1751 aa
AA seq
DB search
MVPLNHPGVAAEVRLVLQGATDADRESVRRELCQLVDYGHDGCLLLLQVCLDEVLLNDRE
AKNLQLKHDLLSATFRYCLDKTFFSTCFCEALMQIKTGTDGLLETLSSALELSAAEKVGI
GLALSDSDNSGMKLKGQQFAIAQIEELCLNPNQSVPNDQIHEIVVFLHQTDGLTKHMDTF
SNIASLLEVGQSPFFAPIPKDQHDVQSINHSRHLEMYLDSTNDDFESLLSEIGKEISMAD
IVTELGYGCTVDSTQCKEILSTFQPLDDVAISKLLGAVIGTQNSLAEAHNTYATFVSAIR
NTHLSESPQLTTWNTDVLVDSINELAPSTNWVHVMESLDHEGFSIPDEAAFCLLMNIYGR
ACKDPFPLHAVCGSMWTNTEGQISFLKHAISAPATIFTFAHSSRLLALPDFASLGPGNHA
WFCLDLLEVLCQLAEVGHTVSVRSMLDYPLGHCPELLLVGLGHINTAYNLLQFEVLSCAF
SAILKDTTKRNVVNYLWHINPCLTLRGFVDAHSDPSCLLRIVDVCHDLKILSAVLESTPF
AFSIRLVAAACRKDHSHLEKWLTEKLTVYKDGFVEDCVNFLKEAMNAASYAVEGTTEQPQ
FSVVDTYWEACPPFIKVLQSHLGQLLSNQLSDELRELCALYESRNQGPVARDIPTSEGGS
DDVEVEANAYFHQMFSGQINIDVMIQMLTRFKESPDKREQSIFNCMISNLFEEYKFFTKY
PDKQLKLAAVLFGSLIKHELVAHLGLGIALRAVLDALRKSVDSKMFMFGTTALEQFMDRV
IEWPQYCNHILQISHLRATHAEMVSAIERALARISSSQNEPNAGNLLSTEQLVSGSSSIE
AMEASEPSWQLMGTSPTQLGRTPYPLQQRQPSVLGDRSKISIGTSQNKSILPSQPSVPSA
SADSAFNLKTTVPPSLAHSMSMSNSAHSTSFLRPRNTSTVLPRQHSYTTGFGNALNIETL
VAAAEQRDNPIETPPSEVQDKILFMINNISTSNMEAKAKEFNEVLQEQYYPWFAQYMVMK
RASIEPNFHDLYLKFFDKLNSRSLSKEMLKATYENCKVLLRSDLIKSSSEERSLLKNLGS
WLGKFTIGRNQTLRAKEIDPKSLIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPNPWT
MGILSLLSEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPTSLLKDRGREVEGNPDFSNK
DVASSQTPVAAEVSSGVNPPIKHVDLQPEVNSTSRTLSLPTLYTAPVRLPPNSMVEDDKI
ALMMPEQVPSHTLTQVSSSQTPLVSLSPSPLSLTQLLSLIPHDEIRFKISSKLLPFGSQL
QFSKIMGVALDKAIKEIILPVIERSVSIASKTTKEIILKDYATESDYSAANRSARLMVGT
LAGSLAHVTCKEPLRVALLSHLRSLTQNLASNSETLEQVVQVLINDNLDLGCASIESVAA
RKAVDSIEGEITQSFSQQRKKREAAGPTYYDSFTYAQGPFAPVPEVFHTKAESPAQQRVY
EEFGHVWQSHGQSVGAAGSGTAAVSSNFGVPRAYSPSLAQASSAFLSAQTAPLTLTQPTE
LVYEELIPGAAQLSSDSPAQVGISDSSGWLGGTIGDASTSPPLMSNDLPAGGIMDLNVMT
PPPATFSDNLGSGLPDTLSTGDAMERYEQVSQKLEVLIAKDGKDVEIQSVVAEVPDILLK
CVNRDEAALAVAQKVFKSLYDNTSNSGFVMWSLATLVAIRDVCKLEPDVTTADYYYPDGA
YYYMETVDDQE
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgctgaaccaccccggcgtcgccgccgaggtgcggctggtgctgcagggcgcc
accgacgccgaccgcgagtccgtccgccgcgagctctgccagttagttgactatggtcac
gatggatgtcttttgctgctccaagtctgtttggatgaagtgctgctgaatgacagggag
gccaaaaacttgcagttgaagcatgatcttctatccgccactttcagatattgtctggat
aaaacgttttttagcacttgtttctgtgaggcactgatgcagataaaaactggtaccgat
ggcctccttgagactctgtcgagtgcactggaactctcagcggccgagaaagtcggtatt
ggtcttgcgctgtcagattctgataattcaggcatgaagctgaaagggcaacaatttgca
attgctcaaattgaggagttgtgtttgaatcctaatcaatcggtaccaaatgatcaaatt
catgaaatcgtcgtcttccttcaccagaccgatggcctgacaaagcatatggatactttt
agtaacattgcttctcttctagaagttggacagagtcctttttttgctcccatccccaaa
gatcagcatgatgttcagtcaataaatcattcaagacatttggagatgtacttggatagc
acaaatgatgactttgagtcacttctttctgaaattgggaaagaaataagtatggcggac
atagtaactgagttgggttatggatgcactgttgacagcacacagtgtaaggaaatactt
tccacttttcagcctcttgatgatgtggcaatatctaagttgctcggggcagttattggc
actcaaaatagtcttgcagaggcccataacacttatgcaaccttcgtatctgctattcga
aatacccacttgagtgagtcgcctcaattgactacatggaacacagatgttcttgtggat
tcaatcaacgaattggccccaagtactaattgggtgcatgttatggaaagccttgatcat
gagggtttcagtattcctgatgaagcagctttctgtttactgatgaatatatatggccgc
gcttgcaaggatccctttccgcttcatgctgtttgtgggtcaatgtggacaaatacagaa
ggccagatatcatttttaaagcatgcaatttctgcccctgctactatttttacatttgca
catagttcgaggctgctggcacttccggactttgcaagtcttggtccaggtaatcatgct
tggttttgccttgaccttctagaggttttgtgccagcttgctgaagttggacacactgtg
tcggtgcggtccatgctcgattatcctttgggacattgccctgaactcctacttgttggt
cttggacacatcaacactgcatataatctcctccaatttgaagtgctgtcctgtgcattt
tctgctattctgaaggacaccacaaagagaaatgtggtgaattatctctggcatattaac
ccatgcctcacccttcgaggatttgttgatgctcattctgatccaagttgtctcctgaga
attgtggatgtgtgtcacgacctgaagatcctatctgctgtcctcgagtccactccattc
gcatttagcattagattggtggctgctgcttgtaggaaagatcatagccatcttgagaaa
tggctcactgagaagttaactgtatacaaggacggttttgtcgaggactgcgttaatttc
ctgaaagaagctatgaatgccgcatcttatgcagtagagggtaccacggaacaacctcaa
tttagtgttgtggacacgtattgggaagcttgtcctccctttataaaggttctccagtct
cacttgggacagctcttatccaaccaactctcggatgaactaagggagttgtgtgctctg
tatgaatcgagaaatcagggtcctgtagcaagggacatacctacctcggagggaggttca
gatgatgttgaagtagaagcaaatgcgtattttcaccagatgttttctggacagataaac
attgatgtgatgatacaaatgctcactcgcttcaaagaatctccagataagagggagcaa
tcaatttttaattgtatgatctcaaatctgtttgaggaatacaagttctttacgaagtat
ccggataagcagcttaaactagctgctgtgctatttggatcccttatcaaacatgaactt
gtggcccacctcggacttgggattgctctacgcgctgttcttgatgccttacgcaagtct
gttgattcaaagatgtttatgtttggtacgacagcattggaacaattcatggatcgtgta
atagagtggccacagtactgcaatcacatattgcagatttcacatcttcgagctactcat
gctgaaatggtctctgcaattgagcgagcacttgcccgaatttcatcaagtcaaaatgag
cccaacgctggcaacttgctttctacggagcagcttgtttctggatcgtcatctattgaa
gccatggaggcatctgaaccatcatggcagttaatgggtacatctccaactcagctagga
aggacaccttacccgttgcagcaaaggcaaccaagtgtccttggagacaggtccaagatc
tccatcggcacctctcagaataagagcattttacctagtcagccttcggttccttcagca
tctgctgattcagcctttaatttaaagactactgttccaccttcattagctcactctatg
agcatgtcaaatagtgctcattccactagttttctgcgcccccggaatacctcgacagtt
ttgccccggcaacattcctacactacgggatttggaaatgctttaaatattgagacactt
gtagctgcagcggagcaaagagataatccaattgagactcccccatctgaagttcaggac
aagatcttgtttatgattaacaatatatccacctctaatatggaagccaaggcgaaagaa
tttaatgaagtgcttcaggaacaatattatccttggtttgcacagtacatggtcatgaaa
agggcaagcatcgagccaaattttcatgatttatacctgaaattctttgacaaacttaac
tcaagatccttgagtaaggagatgctgaaagctacatatgagaactgcaaggttttgtta
agatcagatcttatcaaatctagttccgaggaacgttccttgctaaaaaatttgggcagt
tggttgggaaaatttaccattggaagaaaccagacattaagagccaaggaaattgacccg
aaatctcttattgtggaggcttatgagagaggacttatgattgctgtaattccattcact
tcaaagattctcgaaccttgccattcaagtatagcatatcgtcctccaaatccgtggaca
atgggaattcttagtctactttctgagatctataatctaccaaacctgaagatgaatcta
aaatttgacattgaggtcctgtttaagaacctcagtgtggacatgaaagatgtgaaaccg
acttcccttcttaaagatcgaggacgtgaagttgagggaaacccagatttttcaaacaaa
gatgttgcttcgtcccaaaccccagtggctgcagaagtctcttcaggtgtcaacccccca
ataaaacatgtagacctgcagcctgaggtcaatagcacttcccgtaccctgagccttcca
actttgtatactgctcctgttcgtctccctcctaacagtatggtggaggatgataaaatt
gctctaatgatgcctgagcaagttccctctcacaccttgacccaggtctcatcttcacaa
acaccattagtatcactatcgccatcgccactctctctaactcagcttttgtcgctgatt
ccacatgatgagatacgcttcaaaataagctcaaaacttttgccttttggctcacagttg
cagttcagcaaaatcatgggtgtggctttggataaggctatcaaagagataatactcccg
gtcattgaaagaagtgtctcaatagcaagcaaaactacaaaagaaattattctaaaggat
tatgcaacggaatctgattacagtgccgcaaatcgctcggctcgtttgatggtcggaaca
ttagctggaagtctagcccatgttacttgcaaggaaccgcttcgtgttgcgctactgtct
catctccgaagccttactcaaaaccttgctagcaacagcgaaactcttgagcaagtagta
caggttctgatcaacgacaatttggatcttggctgtgcaagtatcgagtctgtagcggcg
cgcaaggctgttgattcgattgagggtgaaataactcaatccttttcacaacaaaggaag
aaaagagaggcagctggtcctacatattatgactcttttacttatgctcaaggtccattt
gcccctgtacctgaagtattccataccaaggcagagtctcctgcccaacaacgagtatat
gaggagtttggtcatgtatggcagagtcatggccaaagtgttggtgctgcaggttctggt
acagctgctgtatcgagcaattttggtgtacctcgagcttacagcccaagtttagcacaa
gcttccagtgctttcttgtctgctcaaacagctccacttacattaactcagcctacagag
ctggtgtatgaggaattgattcctggcgctgcacaactttctagtgattctcctgctcaa
gttgggatcagcgactcttctggctggcttggtggaaccattggtgatgcatccacatct
ccacccttgatgtctaatgacttacctgcgggtggaataatggatttaaatgttatgacg
ccacctccagctacattttctgacaatctaggatctggtttacctgatactttgagcact
ggtgatgctatggagagatacgaacaggtttcacaaaagctggaagtcttgattgccaag
gatggtaaagatgtggaaatccagtctgttgtagcggaagttcctgatatcttactcaaa
tgtgttaaccgggatgaggctgcattagctgttgcacaaaaggttttcaaaagtttgtat
gacaacacatcaaatagcggttttgtcatgtggtctctagcaaccttagttgcgataaga
gatgtatgcaagcttgagccagatgtcaccaccgccgactactactaccctgacggagcc
tactactacatggagaccgtcgacgaccaagagtag
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