Trichomonas vaginalis: 4767116
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Entry
4767116 CDS
T01022
Symbol
TVAGG3_0944390
Name
(RefSeq) nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4767116 (TVAGG3_0944390)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4767116 (TVAGG3_0944390)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4767116 (TVAGG3_0944390)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4767116 (TVAGG3_0944390)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
DUF3819
CNOT1_CAF1_bind
CNOT1_HEAT
CNOT1_TTP_bind
Stanniocalcin
BORCS6
Motif
Other DBs
NCBI-GeneID:
4767116
NCBI-ProteinID:
XP_001321421
UniProt:
A2EDN3
LinkDB
All DBs
Position
I:7120097..7125745
Genome browser
AA seq
1882 aa
AA seq
DB search
MARNRKEASIIPPPFNFGAIFSDNIIDTELESKNPADISNDLFTIVSSTDQNVSVAILLS
LFSKIQKQENAELKQKLIDIVQSFVNLIQNQVWFRLIVLKFFNKLSEFPEAVLHLLNSHT
SLTLLVHAASTKFTTESQAFIQNNIIRNLSNTANAKLSQNVLFELCDLHIPDFDPDTIFG
QKEAPEFSPYLSPLKLSSQQTNVEISSFENIPIQSVLAESNEKLISNKARLCELFSFYPD
FNEYHAASFIFCLVQPHYHYKEFLEKKLEPDSRNRLLEMHKEIFESKNLSIPNIINHFQD
LDTQQLQVDSCTLLFTILRSLTHGQPINPLSFTSQWKNPQLQHSILSYITVNSVPNLDFS
KTPKQINIDGFIPSGSSFDNCCNCWKSLEFVQRATQLLSNDSAMLNKFFEPLIQRYPAVL
IAIFSRSDFASTNNIIDIATQALGKLVHQNLSGIVNELFKTSSSFITLLLLNLYKNQPNV
VDRIYTTFSDHINQLLESTDIFFATDCAMIAAVNKTIDIGHFVENYTKKNGPDSIQHIID
FIVQKVKQVNSQQLLVITNLFSYLSEHINEYTINQQIFIETAAKSATEIQPALVIPSYDI
KVPQKMYTETKEQATQFMAKLLSNQISPNEFFSFLCKERFVNPLFFSETVLLIISEIERI
DELKIPTIKSLAKVTADLVISHHLNRSKTDKILQQIKLLLNNEEQTQSYLFGIIALEVIL
PKIDNFPQFIFDVMRETRIRDLSPEIFDQIQKVGQKINEPLHSTLPKTINIHPLLQRFFT
MKPPSPLIAKSLLNLSQEPLSLHDLFKRQTLPYDWTALAVVDTIQDKPALLPAFIPSIME
NPDFIPIVFHAAAARSLQHILSPEFGKYEGCLRRRRLYVLGNLIGTITLKENRPILSRFL
DLKKLLLYGISQGKLYGIVPFVVTILQSASPFFNPPNPYTSGLLYILAGICCMDSIKVYI
KEQILGLFNNMGITTAMFDNLPKYFPLNTDSNYDYLITPYSMIHFLSAPDIERITTFDTN
SLSQFIQQNVIIPDNSEIPLSLKEKIKEVVVNYLVSFLHKDGPLLADKAANTTLELVRKD
FKNAQAPEIMLEPAHQMVHQLSNSLTLFNAIYKLPANLVKKLHSVISTPDNDWIDEIAAK
NYEWIAQVLRDSVAIRSWNTVKTILMKEIEEERQHRSRNFTTLPPGLSSNGCIQSQQVYS
EYRDLSFSQQSYPFNKDDKVVIDKEFDEYLSEFKVIVPFEQSYTGNTPDDGSVNDLLDKC
PNFVIETITFDRFKSILKAILKYASKCPSRPFEIVLCHVIEKVVTSVNPSIIKQSRQYVM
SWVHNLLPPYIVCELVRLKLVVEKDLDIEFSTLMNSEPFNTRIMIHVMQALYFGMVETSK
LNAREMISSLTFVCTILQSQLDILKDTQLSRYSQYLKSLTKVFETVFAPENGIPTDTRLS
KLVTYDASENLTNQRHINAIQKWHAAYCDRDIMDYTEETKEVLVCGASTIAALFGQESLK
ACNLFMETVSKLQNTTQYALDVLEAASQNVKGIGNVIGHDMTKYYQIIRKCIVMLTNTDK
FEQIAMTLHNIRPSISPSFAFAWVQLISDKIFVSPLLQNNNSWTSFFVLLADYISSVGLM
TKKMSDSDKEAFDVMYRALLRLILILSHDYNEFMASAAPLLVQIVPLSFTQMRNVLLSLD
SKPNSSFTRAASQFSFVPEKFRTSLNATFPQKSFDKSQCLNCVQMLTEKDSPVTLIYAFV
SSILQSMTFLKQADNTEDSPAFMAMQVLFEECDASHAYDVICAIVDNVRGDEKEATNPKR
LLLSLLNSTMSIKQGLTASELSLRAIFERCSAAAKPPNALQQFFKDILAQDSRTQFLSSM
NYVKNNPQVSDYIQKNLANTKK
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atggctaggaatagaaaagaagcttcaataattcccccaccatttaactttggagctatc
ttctctgataatatcatcgatacagagctcgaaagtaaaaatccagctgatatatctaat
gatttatttactattgtaagttcaacagaccaaaacgtgtctgttgcgatattactatca
ctattttctaaaatacagaagcaagagaatgcagaattaaaacaaaaacttattgatatc
gtccaatcttttgttaatttgatccaaaatcaagtttggtttagattaattgtattaaag
ttctttaacaagcttagcgaattcccagaggcagtgctgcacttgttaaacagccacaca
agcttaactttgcttgtccatgctgcaagtacaaaattcacaacagaatcccaagcgttc
atacaaaataatataattcggaatctctcaaatacagccaatgcaaaattatctcaaaac
gttttatttgaactatgtgacctccatatccctgatttcgacccagatactatatttggc
cagaaggaagcaccagagttctcaccatatttatcacctctgaagctttccagccaacaa
acaaatgttgaaatttcatctttcgaaaatataccaattcaatcagttctagccgagtca
aatgaaaagttaatttccaataaggctaggctctgcgaattgttctcattttaccctgat
ttcaacgagtatcatgcggcctccttcattttctgcttagtccagccacattaccactac
aaagagttcctagaaaagaaactagagccagattctcgcaacagactccttgaaatgcat
aaggaaatctttgaatcaaagaatttatcaattcctaacattatcaaccatttccaagac
ttagatacacaacaattacaagtagattcatgcactcttctctttacaatccttagatct
cttactcatggacaaccaatcaatcctttgtcatttacaagccaatggaagaatcctcaa
ttacaacattcgattttatcttacattacagtcaattccgttccaaatcttgacttttcc
aagacgccaaagcaaataaacattgatggcttcattccaagcggttctagctttgataat
tgctgcaattgctggaaatcccttgaattcgtacaaagagccacacaattgctatcaaat
gactcagcaatgctcaataaatttttcgaaccattaattcagcgttatccagccgtttta
atagcaattttctcaagatccgacttcgccagtactaacaacatcatcgatatcgctaca
caagctcttggaaagcttgtccatcaaaatttgagcggaatcgtcaacgaactcttcaaa
acatcatcatcgttcattacattacttcttctcaacctctacaagaaccaacccaacgtt
gtcgatcgtatttacactacattttccgatcatatcaatcaactcctcgaatctacggac
atcttctttgctacagactgcgcgatgattgccgctgtcaataagaccatagacatcggc
catttcgtggaaaactacactaaaaagaacggtccagattcaatccaacatatcattgat
ttcattgtccaaaaagtgaagcaagtcaattcccaacagttgcttgtcatcacaaacctc
ttctcctacctctcagaacacataaacgagtacacaatcaatcaacaaattttcatagaa
accgccgcaaaaagtgccacggaaatccaacccgcattagttattccttcttatgacatc
aaagttccacagaagatgtacacggagacaaaagaacaggccacacaattcatggcgaaa
ctcctttcgaaccaaatttcaccaaacgagttcttttctttcctttgtaaagaacggttt
gtcaatccgttatttttcagtgaaaccgttttgttgattatttctgagatcgagagaatc
gatgagcttaagattcctaccatcaagagcctcgcaaaagtcacagctgatcttgtaatt
tctcatcatttaaaccgctcaaaaactgacaaaattttacaacaaatcaaattattgttg
aataacgaagaacagacgcaatcctatttatttggtatcattgctttggaagtgattctc
ccaaagatcgacaatttcccacagttcattttcgacgtaatgagggaaacaagaatcaga
gatttgagtccagaaattttcgaccaaattcaaaaagttggtcagaaaataaacgaacca
cttcactccacacttcctaaaactatcaacatacatccattactacaaaggttcttcaca
atgaagcctccttcacctcttattgccaaatcccttctaaacttatcccaagaaccccta
tccttgcatgatttgttcaaacgacaaacattgccatatgattggacagctctggctgtt
gttgacacgatacaagacaaaccggctcttttacctgctttcattccaagtatcatggag
aatcctgactttattcctattgttttccatgcagcggccgcaagaagtcttcaacacata
ttgagtccggaattcggaaaatacgaaggttgtttgagaagaagaagattgtatgtgtta
ggaaatttgataggaacgataactttgaaagaaaaccgtccaattttgtcacgttttctt
gatttgaagaaacttctattatatggaatttcacaaggaaagttatatggcattgttcca
tttgttgttacaatattacaatcagcgtcaccattctttaatccgccaaatccatataca
tctggattgttgtatattttggcaggaatctgttgcatggattcaatcaaagtatacata
aaagagcagatcttaggattgtttaataacatgggaataacaacagcgatgtttgacaat
cttccaaagtatttcccattgaatactgattcgaattatgattatttgatcactccttat
tcgatgattcatttcttgagtgctcctgatatagagagaattacaacattcgatacaaac
agtttgtcacagttcatacaacagaatgttataattcctgataactcggaaattccttta
tctttgaaggagaaaatcaaagaagtcgttgtcaattatttggtttctttccttcataaa
gatggacctcttttagctgacaaagctgcgaatacgacattggaacttgttagaaaagat
ttcaagaacgcacaagctcctgaaataatgttggaaccagcacatcaaatggttcatcaa
ctgagtaattctttgactttgtttaacgcaatttacaaattgccagcaaatttagtcaaa
aaattacattcagttatttccacacctgacaatgattggattgacgaaattgcagcgaag
aactacgaatggattgcacaggttttaagagattctgttgcaatcagaagctggaacact
gtgaagacaattttgatgaaagaaatcgaagaagaaagacaacatagatctcgtaatttc
acaacattaccacctggtttgtcatcgaatggatgcatacaatcacaacaggtttattcc
gaatacagagatctgtctttctcccaacaaagttatccatttaacaaagacgacaaagtt
gttattgacaaagaattcgatgaatatctttccgaattcaaagtcattgttcctttcgaa
caaagttacacaggaaacactcctgatgatggatcagtcaatgacttactcgataaatgc
cccaatttcgttatcgaaacaatcactttcgatagatttaaatctattctcaaagcaatt
ctcaaatacgcttctaaatgtccttcaaggccatttgaaatcgttttgtgccacgtgatt
gaaaaagtcgttacttctgtcaatccttcgataattaagcagtcaagacaatacgtaatg
agttgggtacacaacttattacctccttacatcgtttgcgaattggtcagacttaaattg
gtcgttgaaaaagacttggacatcgaattttcaacattaatgaattctgaaccattcaac
acaagaataatgattcatgtcatgcaagctctttatttcggtatggtcgagacatcgaaa
ttgaacgcgagagagatgatctcgtcattgacttttgtctgcacaattctccagagccag
ttggatatcttaaaggatacacagttatccagatattcacagtacttgaaatcactgaca
aaagtctttgaaactgttttcgctccagaaaacggaattccaactgatacaagattatca
aagctcgtgacatatgatgcatcagagaacttgacgaatcaaagacacatcaacgcaata
cagaaatggcacgcggcgtattgcgacagggatatcatggattacacagaagaaactaaa
gaagttttagtttgtggagcatcaacaattgctgctttatttggccaggaatcattgaaa
gcatgtaatcttttcatggaaacagtttctaaacttcaaaacacgacacaatacgcattg
gatgttttagaagctgcatcacaaaacgtgaaaggaataggaaatgtcattggccatgat
atgacgaaatattaccaaataattcgtaaatgcattgtcatgttaacgaataccgataag
ttcgaacaaatcgcaatgacattgcataacatcaggccaagtatcagtccatcatttgct
tttgcatgggttcaattgatatcagacaaaatctttgtttctccacttttgcaaaacaac
aattcatggacatcattctttgttttgctggccgattatatatcatctgttggattgatg
acgaagaaaatgagtgattcagataaagaagcattcgatgtaatgtacagagcattatta
agactgatcttaatattgtcacatgattacaacgaattcatggcttcagctgctcctctt
ttagttcaaattgttcctctttctttcacacaaatgagaaatgttttgttgagtttggac
tcaaaaccaaattcatcatttacaagagctgcatcacaattctcattcgttcctgagaaa
ttcagaacaagtttgaatgccacattccctcagaaatcatttgataaatcgcagtgtttg
aactgcgtgcaaatgttaaccgaaaaggattcacctgttacattgatctacgcatttgtt
tcgtccattcttcagtcaatgacattcttaaagcaggcagataacactgaagacagccct
gctttcatggcaatgcaagtcttgtttgaagaatgcgatgcaagccacgcttacgatgtc
atctgcgcaattgttgataacgttagaggtgacgagaaagaggcaacaaatccaaagaga
ttgttgttatccctccttaattcaacaatgtcaatcaaacaaggtttgactgcttcagaa
ttgtcattgagagcaatcttcgaaagatgctctgcagcagcgaaacctccgaatgctttg
cagcagttcttcaaggatattcttgctcaggactcaaggacacagttcttgagctcaatg
aactacgtcaagaataatccacaagtaagtgattacatccagaagaatttggcaaatact
aagaaataa
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