Trichomonas vaginalis: 5463664
Help
Entry
5463664 CDS
T01022
Symbol
TVAGG3_1010380
Name
(RefSeq) nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5463664 (TVAGG3_1010380)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
5463664 (TVAGG3_1010380)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
5463664 (TVAGG3_1010380)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
5463664 (TVAGG3_1010380)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
5463664
NCBI-ProteinID:
XP_001579150
UniProt:
A2DMY7
LinkDB
All DBs
Position
I:18892950..18898587
Genome browser
AA seq
1699 aa
AA seq
DB search
MPEQISQTMPTSLSIFTDSFYPENKLSLSLSNPSLYDAVIECEPRSLISPANLERLLSFF
QDFNASHAASYLTAISSSSCSFRQYFETLEDMQKGSVVKIIMKAFTDRGVDPSTIVNYLD
QPNLKSLDKDGCSMLISFLSLISANQKIDAYPFVIPWNNTRSQLDFLMYIATSQTNITFG
SKCRMIPQEILSHINYDISTISNGCWICIDFVERFVELARIYPKDVVPFFQSCIHKFSHV
ILFAISQVKEQQSKEYIDFVNYIFNIVLYSQLGSRDYFEELWKHSSNFCMRAIFLFSKSS
LQKLTKIAEIFSSHLKELLDSDNLEFSLDLAFNVTIKDSINMEEFIDSIVSKNGQDILIS
FLQLVKTRALESHPTSMQVFISTLNAIFKWLSNHFKTLNLETQLIANSLYSICENIGNGL
QQFNFVDSLPPVNPSDIKLASSEYFKQYFDGKTTLNKFLLILHHLKAVNNQLFEDMIHYP
ILELNYISNNDIKFATKMGQLVGNMILENLYGESDLSAIFATFHKTYSEDSDQPLIIFTS
SALSICYSKLTRIPIYVFNLLKQPSFKQREPILYQNIKKISMSLSAPIQLSQTTKLNIHP
KIRRFEKLQQPPPRLRRNLQNLNNDSQMLHPTIQAFTGYLDWLALHLVEDIEDHPCLLQT
FLPSIIEDREFTEIMIQAASYEVYNLVEKSDEIATYEGGFKRRRLSILGRLIGNLTFALN
RPILSKYIDIKRLLLYSLAHGKLFGVLPFVAAVLRCATSFFEPPNPYMSAILQVLASINS
IDLLKLSIKNQITLIMNHFKVTSSQFMIIPLIPNINEDNFDFITKPFSLLYFSNQADIDK
IISFEDSAFYTLTSQHFIIPEYEGENAEEKQSKFRNALTNATLSFLKTEGKNLSQVASST
ASELILKDFVLCNNMNLIYQTAETLTKQLSASLVMFTVFQKQQIYLHHNVMHDIDQKDSE
WALQGVQANHNFIGQLLKDVVYLKAWKIVQQKIENFEQQKKENSHNQRHQDLIPLSIQHL
VPPSILPTEQGLLPQHNFIYQDLAELALNPSQIQIIDKTADSKSKSYEAYESYFQWVAKR
ISSETNATDLNDQINSLLQLVSEKIPDVGPNFESFTSLIRTMMKYMYKNNHRINDTVFSR
ILEQIVGKAPPEYVTRMQPLIVSWLRNFIPSIQLLCEFLRTGLLTTKQLDKFFFDSLNRQ
PFNGRLYMFAVRFLHQTLIEKPTLKPSDMIDSLSFVVTTPNILIESITTQTQQLPIDELQ
KVLDTMDVPLNVLSTNSKLQSVSIFDPLEELQDLEKIQLLLMEWKEIADDDSVDKIMECL
EYGKNFFVYLFFSESEETISKFISLVHKAKLLDASFSHILESLELVIQGNSHVISFDFRK
YYDILIRLITFYANNTKLLIIASLLHNLRPLNAPTFTPDWAQLITHNHFVSYLIQNYPEV
MKLLLEDYTFAVTYLQGAHAKDAFEVYYKSLLRFILILFHDFPDFMYDISLEVCSMFGSH
FTQLRNIFLSVSPKGKLPPITEQFTDDSFTKLKQVTPKLISELSFDEIQNEETMKKFVSQ
VEKRSGTTALHSFIVYLINKTECKDINKMLDLLVDNSTPETMINVLHVLFDQLRNPGRIT
NVFMKYIINLMKKPKIDELIVTLAIERFSTPSPQPWGLRCFINHIITDKEINLSNKKFVS
DSTEVQQFIEVIKKSVAQQ
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcaaatctcacaaacaatgcccacatcattatccatatttactgactcattt
tatccagaaaataagctatctttatcgctatcaaacccttcattatacgatgccgtgatc
gagtgtgagccgcgaagtttaatttcaccggcaaatctcgagagattattgagctttttc
caagacttcaatgcatcccacgcagcttcttacttaacagcgatttcttcttcatcttgc
tcatttcgtcaatatttcgagactttagaggacatgcagaaaggaagtgttgttaagatt
ataatgaaagcatttacagaccgcggcgtcgatccttcaacaattgtaaactatttggat
cagccgaatctaaagtctcttgataaagatggatgctctatgctgatatctttcctttca
ttgatatcagcaaaccagaaaatcgatgcttatccgttcgtgattccatggaataataca
agatcacaattagacttcctcatgtatatagcaacatcacaaacaaacataacattcgga
agcaagtgcagaatgattcctcaagaaatattaagccatataaattacgatatttctaca
atttcaaacggttgttggatctgcattgattttgttgagagattcgtagagcttgcaagg
atataccccaaggatgtcgtaccatttttccaatcctgcattcataaattcagtcatgtg
attttatttgcaatttctcaagtgaaagaacagcaatctaaggaatatattgattttgtg
aactatatattcaacattgtactgtattcgcagctaggaagtcgtgattatttcgaagaa
ttatggaaacactcatcaaatttctgcatgagagctattttcttattctcaaagagttct
ctgcagaagctaaccaagattgctgaaatattctcttcacatcttaaggaattgttggat
tctgataatcttgaattttctcttgacctcgccttcaatgttacgatcaaggattcaata
aatatggaagaattcatcgattctatcgtatccaagaacggccaggatattctaatttca
ttccttcagcttgtaaaaacaagagctttggaaagtcatcctacatcaatgcaagtcttc
atttctacactaaacgcaatatttaaatggctttccaaccattttaagacactaaatctc
gagacacaactaattgcaaattcattgtactcaatttgtgaaaatatcggtaacggacta
cagcaattcaactttgtggactcattgccacctgtaaatccatccgatatcaagcttgct
tcgtcagaatatttcaaacaatactttgatggcaaaacaacactcaacaagttccttttg
atattacatcacctcaaagcagtcaataaccaactttttgaggacatgatccattatcca
atccttgaattaaattatatctcaaataatgacataaaatttgccacaaagatgggccaa
cttgtcggaaacatgatcttagagaacttatatggcgaatcagacctctcagccatcttc
gcgaccttccacaaaacgtattcagaagattccgaccaaccacttataattttcacttca
tctgccctatccatctgttattccaagcttacacgtattcctatttacgtgtttaacctt
cttaaacagccaagtttcaagcaaagagagccaattttgtatcaaaacataaagaagatt
tctatgtcactttccgcaccgatacaactttcccaaaccacgaaattgaacatccatcct
aagattcgtaggtttgagaagctccagcagcctccaccacgtcttcggaggaatttgcag
aacctaaataacgacagtcaaatgcttcatcctacaatccaagcatttacaggttattta
gattggttagcacttcatttagtagaagacattgaagatcatccatgtttgttacagaca
ttccttccatcaataatagaagacagagaattcaccgaaataatgatacaagcagcttca
tatgaagtctacaatttagtagaaaaatcagatgaaattgcaacatacgaaggtggattt
aaacgcaggagattatcaattttaggaagattaattggtaatttaacattcgcattgaac
agaccaatactttccaaatacattgatatcaagagattgttattatattctttagcacat
ggaaaattatttggtgttttaccatttgttgctgcagttttaagatgtgcaacatcattc
tttgaaccaccaaatccatacatgagtgctattttgcaagtattggcttctatcaactca
attgatttgttaaaattgagtataaagaatcaaattactttgattatgaatcatttcaaa
gtaacaagttcccaattcatgattattcctttgataccaaatatcaatgaggataatttc
gatttcatcacgaaacctttctctttgttgtatttctccaaccaagccgatatcgacaaa
attatttcatttgaagattccgctttttacactttgacgagtcagcatttcattattcca
gaatacgaaggagaaaacgcagaagagaaacagagtaagttcagaaacgctttaactaat
gcgacattgagtttcttgaagacagaaggaaagaatttgtctcaagtcgcaagttctaca
gcttctgaattaattctaaaagattttgtactttgcaacaacatgaatttgatttaccaa
acagcggagacattaacgaaacaattaagtgcaagccttgttatgtttactgttttccag
aaacagcagatctatttgcaccataatgttatgcacgacatcgaccagaaagacagcgaa
tgggcattgcaaggtgtacaagcaaatcataatttcattggccaattattaaaagacgtt
gtttatttgaaagcctggaaaattgttcagcaaaagatagagaatttcgaacagcagaag
aaagaaaacagtcataaccagagacatcaagatcttataccattaagtatccaacattta
gttcctccttcaattcttccaacagaacaaggtttgttgccacaacataatttcatttac
caggatttggcagaactcgctttgaatccatcccaaatccagatcatcgacaaaactgcg
gatagcaagagtaagtcatatgaagcgtacgaaagttacttccaatgggtagcaaagagg
atttccagtgaaactaatgcaacagatttgaatgaccaaataaattctttgttacaatta
gtttcagaaaaaattcctgacgttggaccaaatttcgagagtttcacatcattaataaga
acaatgatgaaatacatgtacaagaataaccatagaattaatgatactgttttctctcga
atccttgaacaaattgtcggcaaagctcctcctgaatacgtcacaagaatgcagccattg
attgtttcttggttaagaaacttcattccaagtatacaactgctttgtgagttcttgagg
acagggttgctcacaacgaaacaactcgacaagttcttcttcgattcgttaaatagacaa
ccatttaatggtcgtttgtatatgtttgctgtcagatttttacatcaaacattgatcgaa
aaaccaacacttaaaccgagtgatatgattgactctttgtcatttgttgtaaccacacca
aacattttgattgagtccatcacaacacagacacaacagttgccaattgatgaactccag
aaagttttggatacaatggatgttcctttgaatgttttgagtacaaactcgaaattacag
agtgtatcaatattcgatccattggaagaactccaggacttagagaagatacagttatta
ctaatggaatggaaagaaatcgctgatgatgacagtgtagacaaaataatggaatgtttg
gaatacggaaagaatttctttgtttatcttttcttttctgaatcagaagaaacaatttcc
aaattcatttcattagttcacaaggcaaaattattagatgcatcgttctctcatatcctg
gaatccttggaacttgtaatacaaggaaattctcacgtaatatctttcgattttagaaaa
tattacgatattttaataagactcataactttttatgcaaacaacacaaaacttctaatt
attgccagtttgctgcataacttaaggccattgaacgcaccaacattcacaccagactgg
gcacaattaattactcacaaccatttcgtttcttatttgatacaaaattatccagaagtt
atgaaattattgttagaagattatacatttgctgtcacttatttgcaaggagcacatgca
aaagatgcattcgaagtgtactataagtcattacttcgcttcatcttgatattatttcat
gatttccctgatttcatgtatgatatttcccttgaagtttgctcgatgtttggttcacat
tttacacaactaagaaacattttcttaagtgtttctcctaaaggaaaattacctccaatc
actgaacagtttactgatgatagctttactaaattgaaacaagtaacacctaaactaatc
agtgaattatcatttgatgaaatacaaaatgaagaaacaatgaagaaatttgtttctcaa
gttgaaaaaaggagtggaacaacagctttgcattctttcattgtctatttgattaacaag
actgaatgcaaggatatcaacaagatgttagacttattagttgataacagtactcctgaa
acaatgataaatgttttacatgttttattcgaccaattaagaaatccaggaagaataaca
aatgttttcatgaaatacataattaatttgatgaagaagccgaagattgatgaattgatt
gtcacattggcaatcgaaagattctctacaccatctccacagccatggggattgcgttgc
ttcatcaaccacatcatcactgacaaagaaattaatctatcaaacaaaaaattcgttagt
gattcaacggaagtgcaacagtttattgaagttatcaagaaatctgttgcacaacaatga
DBGET
integrated database retrieval system
