Trichomonas vaginalis: 5465921
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Entry
5465921 CDS
T01022
Symbol
TVAGG3_0998200
Name
(RefSeq) CCR4-NOT transcription complex family
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5465921 (TVAGG3_0998200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
5465921 (TVAGG3_0998200)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
5465921 (TVAGG3_0998200)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
5465921 (TVAGG3_0998200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
XPC-binding
GlutR_dimer
Motif
Other DBs
NCBI-GeneID:
5465921
NCBI-ProteinID:
XP_001581373
UniProt:
A2DGK0
LinkDB
All DBs
Position
I:16738725..16744384
Genome browser
AA seq
1879 aa
AA seq
DB search
MSKSSGFQTLSKDSGYRCIAGFLSELTAEVDVDLIFIKIKSLIENMDISLLSPTIKNILE
TLSKQGLPDIQKQQLLYCVNKLIEYFVNFPQFHSTISALFSTAKSIPTAISMLDLTTALS
ILVFTDSTPIFGDAKAFISKNIIPKLAPEAYEKLPEVVLFELSNLFLPEFSIPEIMTPNI
PPSLSLLSETLPYDNKLSLALSNPSLYDAVVESEPRSLIAKVPLDRLFGFFPDFNESHAA
SYLTAISSSACSFRPYFDTLEDMQKERVVKVTMEAFVSRGVDLSSIVNYLDQPNLKPLDK
DGCAMLFSTVSSISQNQKIDAYPFVIPWSNTRSQLEYLIYIATMPTNITFGSKCRMIPQE
ILTNIKYDISPIPNGCWICIDFVERFLELASIYPKEVNPFYQASVQKFGHVILFALSQAK
EQQTKEYIDFINYIFNIVLYSQLGGRDYFEELWKYSPKFCVRAIFLFAKSSPQKLTKIAE
TFTAHLKELLDSDNLEFSIDLAFNVTIKDSINIDEFIDSLVAKHGQEILVTFLQLVKSRA
LESQPTSMQVFITTLNAIFKWLSNHFKTLNPGTQLIANALYSICENIGNGLQKFNFAESL
PPVNPPDLKHASSEYFTNYFDSKTTLNDFLLILHHVKVVNNQLFDAMIHYPIYELNYLSN
YDTKFTSKLGQLVGNMVLENLFGESELNSIFQAFHKTYSEESDQSTMVFTSTALNICYFK
LTRIPIYAFNLLKQPQFKQKEPILYQNLKKISMSLSAPIQLSQSTKLNIHPKIRRFEKLQ
QPPPRLRKVLQQLNTDNTQLSQTIQSFSGFVDWLALHLVEDIEDHPALLQDFLPQFLENR
EFTEIIIQAASFEVYNLVEKSNDIATYEGGFKRRRLSILGRLIGNLTFALNRPLLSKYID
IKRLLLYALAHGKLFGVLPFVGAILRCATPFFNPPNPYMSAILQVLASINSIDLLKLSIK
NQISLIMSHFEVTSSQFMVIPLIPNINETNFDFITAPFSLLYVSSQTEIDKIISFEDSAF
YTLASQHFIVPDYEGENAEEKQSKFRSALTQATLAFLKTEGKSLSLVVSSTASELIMKDF
VLCNNMSLIYQTAETLTKQLSASLAMFTVFQKQQIYLHHNVLHELSQEDSDWALQGVQAN
HNWIGQLLKDVVYLKAWKIVQQKLEVFEQQKKENTHSHRHQDPIPQKIQHLIPPSILPTE
QGLLPQHNLIYQDLAELALNPAQIAVFDKPGEKVNKSFEQYETFFQWVSKRIASETELNE
QINSLLQLIYDKIPDVGPNFESFMCLIRTMMKYMYKNNHKINDIVFSKILEKVVSDAQPG
YIVRMQPLIVSWLRNFIPSVSLLCEFLKTELLTTKLLDRFFFDNLNRQPLNGKLFLFAVR
FLHQTLVEKPTLKPGDMIDSISFVVTTPYSLIESVTTSPQNYTIDELQKVLDNMDVPLNV
LSTNSKLQSVSIFDPVEDLQDLDKIQANFTEWKEIAENVTILTNSDRSEIIEKTLECIEF
GKSFFIYLFFSETEEIITKFLMVIFHSNNLENCFLVILEALEVLIQGNSHVISFDFRKYY
DIIIRLITHSLNTSKLLNIASLLHNLRLLCAPTFTPCWTQLITHNHFVSFLVKHAPEVMK
LLLEDYTYSITYLQGAHAKETFDIYYRSLLRFVLIMVHDFPDFMDSISLEICSMFGSHFT
QLRNIFLSVTNNILPPITNDPFKFDTFVSLNQPMPELTKELAFDEIDDEESIKKFVSQLE
KRSGTTALASYVVYLINKSECKDIQQKLEKLIEFTSPETTINILHVCFDQLRYPGRVTSV
FIKFLVSLMKKPKLDELIVTIALERYSTPAPQPWGIRCFVMYLVTDKEIDLENRKFVSDS
PEVQTFIKAIKASVVQQSQ
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaatcttccggttttcagacactttccaaagacagcggatatcgctgcattgca
ggatttctgtctgagttaaccgcggaggtagatgttgatctaattttcatcaaaatcaag
tcattaattgaaaatatggatatttccttgctatcaccaacaatcaaaaacatactcgaa
accctctccaagcaaggattaccagatattcaaaaacaacaacttttatattgcgtaaat
aaattaatcgaatattttgttaattttccgcaattccattccacaatttccgcattattc
agtactgcaaaaagcattccgaccgcaatttcgatgttagatctcactactgctttatca
attttagtttttaccgattcaacaccaatatttggcgatgctaaagcatttatttcaaag
aacatcattcctaaattagcacccgaagcgtatgagaagttacctgaagttgttttgttc
gaactttcaaatcttttcttgccagagttctcaattcctgaaattatgacaccgaatatt
cctccttcactttcattactctcggaaacattaccttatgacaataaactctctttggcg
ctttctaatccttcattatacgatgcagttgtcgaaagtgaaccaaggagtctaattgcc
aaagtccctcttgatcgtcttttcggtttcttccctgatttcaacgaatcccacgctgct
tcttatttaactgcgatttcatcttcagcatgttcgttccgtccttactttgatacacta
gaagatatgcagaaagaaagagtcgttaaagttacaatggaagccttcgtttcaagaggt
gttgacctttcttcgattgtaaattatcttgatcagccgaatctcaagcctctcgacaaa
gatggatgcgctatgcttttctctactgtatcgtctatctctcagaaccagaaaattgac
gcttatccatttgttattccttggtcgaatacaagatcgcaattagagtatttaatatac
atagcaacaatgcctacaaacattactttcggaagcaagtgcagaatgatacctcaggag
attttaacgaacataaaatacgatatttctccaattccaaacggctgttggatttgcatc
gattttgttgaaagattcctcgaattagcgagtatataccctaaggaagtcaacccgttt
taccaagcttccgttcaaaaattcggtcatgtgattttatttgcactttctcaagcaaaa
gagcagcaaacaaaggaatatatcgattttattaactacatattcaacattgtcctgtat
tctcagctcggaggccgcgattatttcgaagaattatggaaatattctccaaagttctgt
gttcgggccatcttcttatttgcgaagagctcaccccagaaacttactaaaatcgcagaa
acatttaccgcgcatcttaaggaactccttgattcagataatcttgaattttccattgac
cttgcgtttaatgttacaatcaaggactccattaacattgacgagttcatagattcactt
gttgctaagcatggccaggaaatcctcgtaactttccttcaattagtaaaatctcgcgca
ttagaaagccaaccaacatccatgcaagtattcattactacattaaatgccatattcaaa
tggctctcaaaccacttcaaaacattaaatccaggcactcaattaattgcaaacgcttta
tactcaatttgcgaaaacattggcaacggattacagaaattcaacttcgcagaatcatta
ccgccagttaatcctccagatttaaagcacgcatcttcagaatatttcacaaattacttt
gattcgaagacaacactaaacgatttcttacttatactacatcacgtcaaagtagtcaat
aaccaactctttgacgccatgatacattatccaatttacgaattaaattatttatcgaat
tatgatactaaatttacctctaagctcggccagcttgtcggcaacatggtccttgagaac
ctctttggcgaatccgagctcaactccatcttccaggccttccacaaaacgtattccgaa
gaatccgaccaatcaaccatggttttcacctccacagccttgaatatctgttatttcaag
cttacacgtatccccatctatgcgtttaacctattaaaacagcctcaattcaagcaaaaa
gagccaattttatatcaaaacttgaagaagatttctatgtcactttctgcaccaatacaa
ctttcccaatcaactaaactaaacattcatccaaaaatcagaaggtttgagaagttgcag
cagcctcctccacgtcttcggaaagttttgcaacagttaaatacagataacacacaacta
tcacaaacgatacaatccttcagtggatttgttgattggctagctcttcatttagtagaa
gacattgaagatcatcctgctctattgcaagacttccttccacagttcttagagaacagg
gaattcacggaaatcatcatccaagcagcatcatttgaagtctacaatttagtagaaaaa
tcaaatgacattgctacatacgaaggtggatttaaacgcaggagattatctattttagga
agattgataggtaatctaacatttgctttgaacagaccattgttatcgaaatacattgat
atcaagagattgttattatatgctttagctcatggaaaattatttggtgttttacctttc
gttggtgcaatattgagatgtgcaacaccattctttaatccaccaaatccttacatgagt
gctatattacaagttttagccagtattaattctattgacttattgaaactgagtattaaa
aatcaaatcagtttaataatgtcacattttgaagtaactagttctcaattcatggtcatt
cctttgataccgaatattaatgagacaaactttgatttcatcactgctcctttcagtttg
ttgtatgtatcaagccaaacagagattgacaagatcatttccttcgaagattccgctttt
tacactttagcaagtcaacatttcattgttcctgattacgaaggtgaaaatgctgaagaa
aaacaaagtaagtttagatcagcattgacacaagcaactcttgcttttcttaagactgaa
ggaaagtcattgagtttagttgtaagttctacagcatcggaactcatcatgaaagacttt
gttttgtgtaataacatgagtttgatttatcaaacagctgaaacattgacgaaacaattg
agcgcaagtctcgcaatgttcactgttttccagaaacagcaaatatacctccatcacaat
gtattgcatgaactaagtcaggaagacagcgattgggctttgcaaggcgtacaagcaaat
cataattggatcggccaattattgaaagacgttgtttatttgaaagcttggaaaattgtt
caacaaaaattggaagttttcgaacaacagaagaaagaaaacactcattcacacagacac
caagatccgatacctcaaaagatacaacacttaatacctccttctattctgccaacggaa
caaggcttgttaccacaacataatttgatttaccaagatttggcagaactcgcattgaat
ccagcacaaattgctgtgttcgataaacctggagagaaagtgaataagtcttttgaacag
tacgaaacattcttccaatgggtgtctaagagaattgcaagcgaaactgagttaaatgaa
caaattaattctcttttgcaactgatttacgacaaaatacccgatgtcggaccgaatttc
gagagtttcatgtgcttgataagaacaatgatgaaatacatgtacaagaataaccacaag
atcaatgatatcgtgttctcaaagatcttggaaaaggttgtaagcgatgcacagcctgga
tacatcgtgagaatgcagccattgattgtttcgtggttgagaaacttcattccaagtgtt
tctttactttgcgaatttctcaaaactgaattattgacaacaaaactgttggatagattc
ttcttcgataatttgaatagacaaccattgaatggtaaactgttcttgtttgctgtaaga
ttcttgcatcaaacacttgtagaaaaaccaactttgaagccaggtgacatgatcgattca
atttcttttgttgtgaccactccttattcattaattgaatcagtaacgacttcaccacaa
aactacacaattgacgaactccagaaagtgttagataacatggatgtacctctcaacgtt
ctaagcacgaactccaaactccagagcgtctccattttcgatccggttgaagatctacag
gatctggacaagatacaagcaaactttactgaatggaaggaaattgctgaaaacgtgaca
attttgacaaattctgacagatcagaaatcattgagaaaacacttgaatgcattgaattc
ggcaagagcttctttatctatttgttcttcagcgaaacagaggagatcattacgaagttt
ttgatggttattttccattcaaacaacttagaaaactgtttcttagttattttagaagct
ttggaagttttgatacaaggaaactctcatgtcatttcctttgatttcaggaaatactat
gatataatcattagattaatcacgcattcattaaacacttccaaacttctaaatatcgca
agtttgttacataacttgagacttctttgtgctccaacatttacaccatgttggacacag
ttaattactcataaccacttcgtttctttcttggtgaaacacgctcctgaagtaatgaaa
ctgttacttgaagattacacgtattccattacttatttgcaaggagcacacgcgaaagaa
acattcgatatctattacagatcattgttaagattcgtgttgataatggtacacgatttc
cctgatttcatggattctatttcccttgagatctgctcaatgtttggttcacatttcact
cagttgagaaatatctttttgagtgtaacaaacaatattttgccgccaataacaaatgat
ccatttaaatttgacacttttgtttcattgaatcaaccaatgccggaattgacgaaagaa
ttggctttcgatgaaattgatgacgaggaatcaataaagaaattcgtttctcagttggaa
aagagaagcggaacaacagctttggcaagttacgtcgtttatttgatcaataaatctgaa
tgcaaagatattcaacaaaaattggagaaattaattgagttcacttcacctgagacaact
atcaatattctccatgtttgtttcgaccagttgaggtatccaggaagagttacatcagtg
tttattaaattcttagtttcgttgatgaagaaaccgaaattagatgaattaattgtcaca
attgcactcgaaagatactcaactcctgctcctcaaccatggggaattagatgtttcgtc
atgtatctcgtgactgataaagaaatagatttggaaaatagaaagtttgtcagtgattcc
cctgaagtacagactttcattaaagcaatcaaagcttctgttgtacaacaatctcaataa
DBGET
integrated database retrieval system
