Trichomonas vaginalis: TVAG_2v0530780
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Entry
TVAG_2v0530780 CDS
T01022
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase family
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TVAG_2v0530780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
TVAG_2v0530780
Enzymes [BR:
tva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TVAG_2v0530780
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
TVAG_2v0530780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5688
zf-RING_7
Motif
Other DBs
NCBI-GeneID:
5466514
NCBI-ProteinID:
XP_001581953
UniProt:
A2DEX5
LinkDB
All DBs
Position
II:complement(12117472..12122763)
Genome browser
AA seq
1657 aa
AA seq
DB search
MDTQEIRKLSTVFVHENELYEPRDLKPKVGGTLDLRLGAASKNQICQTCGQPQENCPGHF
GSLELVLPVYNIGFYPAILHCLKCICKTCSNILLPNEEINSRLKKFYSKPPQTVSAKIDR
VKALMKECEKVTICPHCGAINGPVKKTKTTLIITHNVGQKNDKLREPFLSKFSKLDIKGD
DYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADMIITSIVIPPNCIRPA
VIAAGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWSSLQQNVNSSINSEAA
DTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSGRTVISPDPNVNVDQVVIPVS
MAKILTFPTRVTKFNKKDLMRYVKNGPDKYPGANNIIKADTGFKLSLAYGNKEQRAQELR
EGDIVERHLLDNDTVLFNRQPSLHRISIMGFRAKVMEWCTMRFNESVCAPFNADFDGDEM
NVHLPQTLEAAADARYLMNVLYNLFSPRAGEMIVAPTQDFLSGAFILTRKNVFLDYSHFT
FLISQIFDNLEEVDIPPPAIVKPYQLWTGKQVVSLMIAPNKKTDLHFTHQVGNKEYTGNK
EMCKKDGYVSFLDNYMVSGVLEKSLIGGGPKSLWAIMARDHSPKFAAVCMQRIAKMSCRY
LMNRGFSIGIMDVRPDENLTNNKNAQISKTYQDCYDKIAEYDSGKLEAAPGMTKLATLEA
FLNGQLSELRNKIGKMCMAELSPINTPLVMAKSGAKGSDINICQMMACLGQQSVGGKRII
DDFIDRSIPHFKHGSKDPISKGFIASSFYTGLTPSDFFFHTMGGREGLVDAAVKTAQTGY
MQRRLMKSLEDLVIAYDQTVRMSDGTIVQFTYGDDGLDPLNLETTYFPVDLNRVSQEYLF
KFSQEPLMDQIEARERIETLFNDIREEQQGRGLVRVPEFLIDRLKKYIDDLLEKYIKAND
QYIGEDLSMDSYIRATIPFTKSFLEEFVKFCMHRCEKSMAEPGMTVGAVAGQSIGEPATQ
MTLRSFHFAGVASMNVTLGVPRIEEVMNAVSEIKTPIITANLLSQRDEIAARIVKGIIDR
VTLGQVCKHIEYNQNEKSCYIDIELDAEIIREAKLNITSETVRRSIVNTPKIGVKDENTA
NNGDYNVRVFMQGANPKAFSFIMQQLMLKLPDVVVSGVPGVERVHVGKENGCFKLFVEGN
PFLKVLNTPGIDPKRTVSNHVLDVEKVLGVEAARSVIISEITNVMKNYSLNIDRRHLMLL
SDLMTIRGKVLGVTRHGLAKTSVSSLKLASFETTQEHLFNAAFHNVDEVANGVSASVILG
NFAPIGSGMIDVLVSDELLKRTSLTPRCHLIEDYINPMFLTAPYATNDGFLKPQFSVKSF
LSLEKFLKSEFLTEQGYLKPQYLRLEKFLKKDLLAKDKDPNDPFKIYNEDGTVNQELLTK
DGLLKRSVLDSEKYFSYDFITSEGMMSPRDLIKFDNLARNDHLRREFLGEDGLLKPEYLT
EEGFVKEELQTKEGKPIPRSFMKHEFLTRDGLLKKEFYTSSGLLQAKNFLKLEYINTRGE
PIPDFDLKPEYLTRDGMLKMEYIADDNGKNNKCYIKPEFMKQQYWWPKYTGPDYVKPELL
NPENFVNPDYLKPQFLTPQPQSKYREQIEKGTFKPRK
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaagaaatcagaaaattaagtactgtttttgtccatgaaaatgaattatat
gaaccacgcgatcttaaaccaaaggtcggaggcacattggatttaaggcttggtgcagca
tctaagaatcagatctgccagacttgcggtcagccccaagaaaattgccctggacatttt
ggttctttagagctagtacttcccgtttacaatattggtttttatcctgctattttacac
tgcttaaaatgcatttgcaaaacatgttcgaacatacttcttcctaacgaagagatcaat
tctcgtctcaagaagttttattccaagccacctcaaacagtttcagcaaagatagatcgt
gtcaaagctcttatgaaggagtgcgagaaggtaacgatttgccctcattgcggagccata
aatggacccgttaaaaagacaaaaacaacacttattattactcataatgttggacaaaag
aacgataaacttcgtgagccatttctcagcaaattcagtaagctagatatcaaaggagat
gattataaaaaatatcttgataacatttgcgacgatattactccattaagagctttacaa
ctcttcaaagcaattcctactcgccaaatccctcttcttttgagcggattttccgtttct
tcaccagccgatatgattattacttcaattgtcattcctcctaactgtattcgtccagca
gtcattgcagcaggcgaaggcacaaaccaggatgatcttactgtccgccttgtcgattcc
gttcatttcaatgacgaaatccgcaaatccatcgaagttggtcgccaagccagctcaacc
atggagctctggagctcactccaacagaacgtcaatagctccatcaacagtgaagcagcg
gatacagcagccaaaacgaagaaaaagaacaaaccagttatcggcgttatccaacgtctt
aaaggcaaacaaggacgttttagaacgaacctttcaggtaaacgtgtcaactactccggt
cgtacagttatttcccctgatcctaatgtcaatgtcgaccaagttgtcattcctgtttcc
atggcgaaaattttgacatttccaactcgtgttactaaattcaacaagaaagacttgatg
agatacgtcaagaacggtccagacaaataccccggtgcgaacaacatcatcaaggctgac
acaggattcaaactttcacttgcttatggtaataaagagcagagagcacaagaattgaga
gaaggcgatattgttgagagacatcttcttgataatgatacagttcttttcaacagacag
ccttctttgcacagaatctctatcatgggattcagagctaaagtcatggaatggtgcaca
atgagatttaatgaatctgtttgcgctcctttcaacgctgatttcgatggtgatgaaatg
aacgtccatttaccacaaactctcgaagccgcagccgatgctagatacctcatgaacgtt
ctttacaacttgttctctccgcgtgccggtgaaatgatcgtcgctccaacacaggacttc
ttgtcaggtgctttcatcttgacaaggaaaaacgtttttcttgattattctcacttcact
tttcttatatcacaaatttttgacaaccttgaagaagttgatattcctccacccgccatt
gtcaaaccataccaattatggacaggcaaacaagttgtttctttgatgattgcgccaaac
aagaagacagatctccatttcacacaccaagtaggaaacaaagaatacacaggaaacaag
gaaatgtgcaagaaagacggttacgtttccttccttgataactacatggtttccggtgtt
ctcgagaagtctcttattggtggtggtcctaaatctctttgggcaatcatggcaagagat
cattcaccgaaattcgcagctgtttgcatgcaaagaatcgcaaaaatgtcttgcagatac
ttaatgaacagaggtttctcaatcggtatcatggatgtccgtcctgatgagaatttgacg
aataacaagaatgcgcagatctctaagacataccaagattgttacgacaagattgcggaa
tacgattcaggaaaactcgaagcagctcctggtatgacaaaactcgcaactcttgaagca
tttctcaacggccaattatcagaattgcgtaacaaaattggtaaaatgtgcatggcagag
ttaagtccaatcaatactcctttagtcatggctaagtcaggtgctaaaggttctgatatc
aacatctgccaaatgatggcttgtttgggtcagcaatctgtcggcggcaagcgtatcatc
gatgatttcattgatagatctattccacacttcaaacacggttctaaagatccaatttca
aagggtttcatcgcaagctctttctacacaggtttgacaccgtcagatttcttcttccac
acaatgggtggcagagaaggacttgtcgatgctgctgtcaagacagcgcagacaggttac
atgcagagacgtctcatgaagtccttagaagatttggtaatcgcatacgaccaaaccgtc
agaatgtcagatggaacaattgttcagttcacttatggtgatgatggcttagatccattg
aacttggagacaacgtatttccctgtcgacttgaacagagtttcccaggaatatctcttc
aagttctcacaggaaccattgatggatcaaatcgaagcacgtgagagaatcgaaacattg
ttcaatgacattcgcgaggaacaacaaggccgtggattagtccgtgttccagagtttttg
atcgacagattgaaaaaatacatcgatgatttattggagaaatacatcaaggcaaacgac
caatacatcggagaagatttgagcatggacagctacatcagagctacaattcctttcacg
aagtcattcctcgaggaattcgttaagttctgcatgcacagatgcgagaaatccatggca
gaacccggtatgacagtcggtgctgttgcaggccaatcaattggtgaaccagcaacacaa
atgactctcagatctttccactttgctggtgtcgcatcaatgaacgttactttgggtgtt
ccaagaattgaagaagtcatgaacgctgtttctgagatcaaaacacctatcatcactgca
aacctattgtcgcagagagatgaaattgctgcaagaattgtcaaaggaattattgataga
gtcactcttggacaagtttgcaaacacatcgagtacaatcagaacgagaaatcatgctac
attgatatcgaactcgatgcagaaatcatcagagaagcgaaattgaacattacttcagaa
acagtcagaagatcaattgtaaacacaccaaagatcggtgtcaaagatgaaaacacagct
aacaatggtgattacaatgttagagttttcatgcagggagcaaatccaaaggctttctct
ttcatcatgcagcagttgatgctcaaacttcctgatgtcgttgtttcaggagttcctggt
gtagagagagttcacgtcggcaaagaaaacggctgcttcaagttgttcgtcgaaggtaat
cctttcttgaaggtcttgaacacaccaggtatcgatccaaagagaacagtttcaaaccac
gttttggatgtagagaaagtcctcggtgtcgaagccgcgagatcagtcattatctccgaa
atcacaaacgtcatgaagaactattccttgaatatcgatagaagacacttgatgcttctt
tccgatttgatgacaatcagaggcaaggttttgggtgtcacgagacatggtttggcaaag
acatctgtttcttcactcaaactcgcttctttcgaaacaactcaggaacatttgttcaat
gccgcttttcacaacgttgatgaagttgcaaatggtgtttctgcatcagttattttgggc
aatttcgctccaatcggatccggaatgattgatgttttggtgtccgatgaactcttgaag
agaacaagtttgacaccaagatgccatttgatcgaagactacatcaatccaatgttcttg
acagctccttacgcgacaaatgacggattcttgaagccacaattctccgtcaaatcattc
ctttctctcgagaaattcctcaaatcagagttcttgacagaacaaggctacttgaagcca
caatatctcagacttgagaagttcttgaagaaggatttgctcgcgaaggacaaagatcca
aacgatccattcaagatctacaacgaagatggaacagtcaatcaagagttgttgacaaag
gatggattgttgaagagatctgttctcgacagcgagaaatacttctcttacgacttcatc
acgagcgagggaatgatgtcaccacgtgatctcatcaagttcgacaacctcgcaagaaac
gaccacctcagaagagaattcttgggcgaagatggtttgttgaagccagaatatttgaca
gaagaaggcttcgtcaaagaagagcttcaaacaaaggaaggaaagccaattccaaggagt
ttcatgaagcacgaattcctcacaagagatggacttctcaagaaggaattctacacttca
agcggactccttcaagccaagaacttcctcaaattggagtacatcaacacaagaggagaa
ccaatcccagatttcgatctcaagcctgagtatttgacaagagatggaatgttgaagatg
gaatatatcgctgatgacaacggaaagaacaacaaatgctacatcaagccagagttcatg
aagcaacaatactggtggccgaaatacactggtcctgactatgttaaaccagaacttttg
aacccagagaatttcgttaacccagattacttgaagccacagttcttaactccacaacca
caaagcaaataccgtgaacagatcgaaaaaggtactttcaagccaagaaaataa
DBGET
integrated database retrieval system
