Tenacibaculum vairaonense: T19A02B_2208
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Entry
T19A02B_2208 CDS
T11462
Symbol
rpoB
Name
(GenBank) RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tvai Tenacibaculum vairaonense
Pathway
tvai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T19A02B_2208 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvai03021
]
T19A02B_2208 (rpoB)
03400 DNA repair and recombination proteins [BR:
tvai03400
]
T19A02B_2208 (rpoB)
Enzymes [BR:
tvai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T19A02B_2208 (rpoB)
Transcription machinery [BR:
tvai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T19A02B_2208 (rpoB)
DNA repair and recombination proteins [BR:
tvai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T19A02B_2208 (rpoB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAL2087491
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Position
T190524A02B:complement(2628688..2632497)
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AA seq
1269 aa
AA seq
DB search
MATINTTERINFASSKLGADYPDFLDIQVKSFQDFFQLQTKADQRGNEGLYKTFMDNFPI
TDTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDV
YLGTIPYMTNSGTFIINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIE
FATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLKKVLGRK
LAARVLKTWHEDFVDEDTGEVVSIERNEIIFDRDTILEKEHIDEIIEAGAKTILLHKEDN
LQADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIEKLFFSEQRYSLGE
VGRFRMNTKLGLDEDLDQKVLTKTDIITIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQ
LAGQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFA
KVNNLGFIETPYKKVDGGVVSIEEPIYLSAEEEEGMKIAQSNLPVNEDGTFGTDRVIARE
EGDFPVETPEAINYMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESP
IVGTGLERRVAKDSRILINAEGNGVVEYVDANKIIIKYDRTEEERMVSFDPDEKSYDLIK
FRKTNQGTNINLKPIVRRGDRVEEGQVLCEGYATQQGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFK
RAVKDKNKRARDKEAIATLEASYVSRFDGLKDNLVDKLFNLVTGKTSQGVYNDLGEEVLP
KGKKFTQKMLNSVEDFTHLSGTWTTDKELNALVVELVHNYKIKVNDLQGSLRREKFTISV
GDELPAGILKLAKIYVAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGQKLHQKYATPIFDGANINEINALTDEAGIPRYGHTYL
YDGGTGKRFDQPATVGVIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSILREILTVKSDDVLGRAKTYESIVKGEAMPEPGLPESFNVLMHELKG
LGLDVRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacgataaacactactgaaagaattaacttcgcatcatctaaattaggagctgac
tatccagatttcttagatattcaggtgaaatctttccaggatttcttccaacttcaaact
aaggctgatcagcgaggtaatgaaggtttgtataaaactttcatggacaactttccgatt
acagacacacgtaatcaatttgtattagaatttttagactattttgtagatccaccaaga
tacagcatccaagaatgtattgaaagagggttaacttatagtgtacctctaaaagcgcgt
ttaaaattatactgtacagacccagaacatgaagattttgagactatagtacaggatgtt
tatttaggtacaattccttatatgaccaactctggtacctttattattaatggagcggag
cgtgttgtggtatcacaattacaccgttcaccaggggtgttctttggtcaatctttccat
gctaatggaactaagttatactcagctagagttattccttttaaagggtcgtggatagaa
tttgccacagatatcaatcaggtaatgtatgcctatattgatagaaagaaaaaattacca
gtaactacgttattcagagccataggttttgaaagagataaagatattttagagattttt
gatttagctgaagaagtaaaagtttctaaggctggattaaaaaaagtattaggtagaaaa
ttagcggcaagagttttaaaaacatggcatgaagatttcgttgatgaagatacaggagaa
gttgtatctattgagcgtaatgaaattattttcgaccgtgatactattttagaaaaagag
catattgatgaaataattgaagctggagctaagactatcttactacataaggaagataat
cttcaagctgattacgcaattattcataatacattacagaaagatcctacaaactcagaa
aaagaggctgtagaacatatatatagacaattacgtaatgctgaaccgccagatgaggaa
actgcaagaggaattattgaaaaattattcttttcagagcagcgctatagtttaggtgaa
gttggacgttttagaatgaatacaaaacttggtttagatgaagatttagatcaaaaagta
ttaactaaaacagatattattacgataattaagtaccttattgagttaataaactctaag
gctgaagtagatgatattgatcacttatctaaccgtcgtgttagaacagttggtgagcaa
ttagcaggacaatttggtgtaggtttagctcgtatggctcgtactattcgtgaaagaatg
aatgtgcgtgacaatgaggtttttacgcctattgacttaattaacgctaagactttatcg
tctgttattaattcatttttcggtacaaaccagttgtctcagtttatggatcaaaccaat
ccattagcagagataacccataaacgtcgtttatcagctttaggacctggaggtttatct
cgtgaaagagctggtttcgaggttcgtgatgttcactatactcactatggacgtttatgt
cctattgaaacacctgaaggaccaaacattggattaatttcttctttagcagtatttgct
aaggttaataatctaggttttatagaaactccatataaaaaagtagatggtggagttgtt
tcaatagaagagccaatttatctttctgctgaagaagaagaaggaatgaaaatagctcaa
tctaacttaccagttaatgaagatggtacttttggaacagatagagttattgctcgtgaa
gaaggtgattttccagttgaaacaccagaggctatcaattatatggacgttgctccaaac
cagatagcttcaatctcagcatcgttaattcctttcttagagcatgatgacgcaaaccgt
gccttaatgggatcaaacatgatgcgtcaagctgtaccattattacgtcctgaatctcca
attgtaggaactggattagaaagaagagtagctaaagattctcgtattttaataaatgca
gaaggtaatggagttgttgaatatgtagatgcaaataaaataataattaagtatgataga
actgaagaagagcgaatggtaagctttgatccagatgaaaaatcatacgacttaattaag
tttagaaaaactaaccaaggtactaacattaacttaaagccaattgtaagaagaggtgat
agagttgaagaaggacaagtactttgtgaaggatatgctactcaacaaggagaacttgct
ttaggaagaaatatgaaagttgctttcatgccttggaaaggatataacttcgaggatgca
attgtaatttctgaaaaagtagttcgggaagatatctttacttctatacatatagatgaa
tattcattagatgttagagatactaagttaggagctgaagaattaacaaatgacattcca
aatgtttctgaagaggcaactaaagaccttgatgaaaatggaatgattcgtattggagct
gaagtaaaacctggagatattttaataggtaaaataaccccaaaaggagagtcagatcca
acaccagaagagaaattattacgtgctatctttggagataaagcaggagatgtaaaagac
gcatcattaaaagcttctccttcattaagaggtgtggtaatagataaaaagttatttaaa
cgtgcagttaaagataaaaacaagagagctcgtgacaaagaagcaattgctactttagaa
gcatcttacgtttctagatttgatggtttaaaagataacttagttgataaattatttaat
ttagtaacaggtaaaacttcacaaggagtttataacgatttaggagaagaagtattgcct
aaaggtaagaagtttactcaaaaaatgttaaactctgttgaagatttcacacacttaagt
ggaacttggacaactgataaagagttaaatgctttagtagttgaacttgtacataactat
aaaattaaggttaatgaccttcaaggtagtttacgtcgtgaaaagtttactatttctgtt
ggtgatgaattaccagcaggaatcttaaaattagctaaaatatacgtagctaagaaacgt
aaattaaaggtaggtgataaaatggctggacgtcatggtaacaaaggtattgttgcaaga
atcgtacgtcaagaagatatgccattcttagaagatggaacaccagttgatattgtatta
aatccattaggggtaccatcacgtatgaacattggtcagatttatgaaactgttcttgga
tgggcaggtcaaaaattacaccaaaaatatgcaactcctatttttgatggagcgaatatt
aatgagataaacgctttaacagatgaagcaggaatccctcgctatggccatacttattta
tatgatggaggaacaggaaaacgatttgatcaacctgcaacagttggagtaatttatatg
attaagttaggtcacatgattgaagataagatgcatgctcgttcaattggtccttactca
ttaattacacaacaaccattaggaggtaaagctcaatttggaggtcagcgtttcggagaa
atggaagtttgggcacttgaagcatatggtgcttcaagtatcttaagagaaattctaact
gtaaaatccgatgatgtattaggtagagcaaaaacttacgagtcaatcgttaagggtgaa
gcaatgccagaaccaggtttaccagaatcatttaacgtattaatgcacgaacttaaaggt
ttaggattagacgttagattagaagaataa
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