Tachysurus vachellii: 132850253
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Entry
132850253 CDS
T09596
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tvc04040
]
132850253 (scn1laa)
Ion channels [BR:
tvc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
132850253 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
Lustrin_cystein
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
132850253
NCBI-ProteinID:
XP_060732613
LinkDB
All DBs
Position
8:16851802..16890476
Genome browser
AA seq
1823 aa
AA seq
DB search
MCTILANCVFMTFTERAERRSLFKKIEYTFTAIYTFDSLIKIIAMGFCMGKFTFLRDPFN
WLDFTVIVLAYVTEFGSGLGNVSALRSFRVVRALKTISVIPGLKTIVGALFQSVKKLSDV
MILTVFCLSVFALIAMQLFMGNLKNKCLKIPTNDTQQDFNGSFTVFNFTQYINDSNNYYK
IDETKDPLLCGNNSDAGQCPDGYVCFKGGPNPNHGFTSYDSFGWAFLSLFRLMTQDYWEN
LYQQTLRASGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATMEEALQKEEKFQA
MMEQLRRQQAEAQAAVAVFETGNHSGDSSSLASKLSSKSAKERCNRRKKRKQKEGEEKGD
NEKVQNSDPGSIIRRTSFRYSVDGNILSYDRPYQSPHQSLVSIQGSVFSPRRNSRTSIFT
FRGRLGSETGFADDEHSAFEDAGSRRGSLFLPHCSERLYSTGSRTSLTPRVFLSPNGKVR
SSVDCNGTVSYVTGNSLPSSPDVLQLPDVPTDKAMTDDSKKKEEYRKRYEAEQLSPGFLT
EPTARERALSVASIITNTMEELEDSRRKCHPCWYKFAKTFLIWDCFPLWVKIKKLVNLFV
MDPFVDLFITICIVINTIFMAMEHHNKADYFVVALTVGNYVFTGIFTAEMIFKIIALDPY
KYFQESWNIFDSVIVTLSIVELGLENVPGMSVLRSFRLLRVFKLAKSWPTLNMLIKIIHN
SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYTSCYCKSTTGDCRLPRWHMSDFFHSFLIV
FRVLCGEWIETMWDCMNVAGQSKCLTVFLLVMVIGNLVVLNLFLALLLSSFSADNLAATN
DDCEMNNLQIAMGRIHRGVAFTKASVHSFFQSSCFRRRRNKVKEEDGLKDCKKLADMSTH
TTVELIKEPQCEKEALGTDSGSENFIFDPTLSVSVPIATADSDPECNMDDLSSYSSDMNE
DKEKLSDCMSSSEGSTVDLQPLKERRESLDFELELPADDPEACFTQGCVNRFPCCQVNVE
KGKWKTWWTLRHTSYRIVEHNWFESFIIFMILLSSAALAFEDIHIEKRKNVKTVLEYADK
VFTYIFILEMLLKWLAYGFAKYFTNAWCWLDFLIVGVSLISLVASALNYSELSAIKSLRT
LRALRPLRALSRFEGMRVVVNALFGAIPSIVNVLLVCLIFWLIFSIMGVNLFAGKFYECV
NATNGSRMSMEVVMNRTDCEQLGNSTRWKNLKITFDNVGAGYLALLQVATFKGWMDIMYA
AVDNRGVDQQPQYEASLLYYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPTNKLQALLFDIVTNQAFDIFIMVLICLNMVTMMV
ESENQTQDTRHHLKKINMVFVVIFTMECVLKMIALRHYFFTLGWNIFDFVVVILSIVGTF
VSEVIKYLFSPTLIRVVRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYAIVAMSQFAYVKKEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLSPILNKPPDCD
PNKEHPGSQYKGDCGNPAIGIIFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSE
DDFEMFYEVWEKFDPDATQFIEYKQLSDFADTLDPPLRIPKPNRIQLIHMDLPIVSGERI
HCLDILFAFTKRVLGESGDMDVLRGQMEDRFMASNPSKESYEPITTTLRHKHEFMSAIII
QRAFRMHLRRQNVKMDSEPYKEAVQENGIVSNRCNNHSASDKSETSSSTIVPPSYASVTQ
SGKNKYEKDKREKEIKGKDNNER
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacgatccttgcaaactgtgtgtttatgactttcactgaacgtgcggagcgtcgt
tccttgttcaagaaaatagagtacacatttactgcgatatatacatttgattcattaata
aaaatcatagccatgggcttttgtatgggcaaatttaccttcctcagagacccattcaac
tggctggacttcactgtgattgtgttggcgtatgtgacagaattcggcagcggtttgggt
aatgtctctgctttgagatctttcagagttgttcgggccctgaaaacaatatctgttatt
ccaggcctgaagaccattgtaggagctctgttccagtcagtaaagaaactttcagatgtg
atgattctgactgtcttttgtttgagtgtatttgcactgattgccatgcagctttttatg
ggaaacctgaagaataaatgcctaaagatcccaacaaacgacactcagcaagatttcaat
ggaagcttcactgttttcaacttcacccagtacattaatgattcgaataattattataaa
attgatgaaacgaaagatcctctgctctgtggaaacaacagtgatgcagggcaatgtcca
gatggctatgtctgtttcaaaggaggccccaatccaaatcatggcttcaccagctatgat
agctttggttgggctttcctctctctctttagactgatgactcaagactactgggaaaat
ctctaccaacagactcttcgagcttcagggaagacgtatatgatcttctttgtattggtg
atattcctgggatcgttctacctggtgaatctgatcctggctgtagtggccatggcctat
gatgaacagaaccaagccaccatggaagaggccctgcaaaaagaggaaaaatttcaggcc
atgatggaacagctcaggaggcaacaagcggaggcccaggcggcagttgcagtatttgag
actggcaaccatagtggagacagttcctctttggcctccaaactcagttccaaaagtgcc
aaagaacgatgcaaccggagaaagaagaggaagcagaaagagggagaggagaaaggggac
aatgaaaaagtccaaaattctgacccagggagcatcattagaaggaccagcttccgatat
tctgtggatggaaacatactgtcatatgatagaccatatcaatctcctcatcagtcactt
gtgagtattcagggctcggtcttctctccacgccgcaacagtaggactagcatctttacc
tttcgtggccgcctgggatcagagactggatttgcggatgatgagcacagtgcgtttgaa
gacgcaggcagccgccgtggctcgttgtttctgccacattgctctgagcgtctttacagt
actggaagcaggacaagcttgaccccacgtgttttcctgtccccaaatggaaaagtgcgc
agttctgtggattgcaatggcacagtgtcatatgtgactgggaactcattgcctagctct
ccagatgttctgcagctccctgatgtacccacagataaagccatgacagatgacagtaaa
aaaaaagaggagtacagaaagagatatgaagctgaacaactctcgcctgggtttttgact
gagcctacagctagagagagggctctgagtgtagctagtattatcaccaacacaatggaa
gagctggaggattcgaggcggaagtgccatccatgttggtataagtttgcaaaaacattt
ctaatctgggattgctttccactgtgggtgaaaataaagaaactagttaacttgtttgtt
atggacccatttgtggatctgttcatcaccatctgcattgtaattaataccatattcatg
gccatggagcatcacaacaaggctgattatttcgtggtagcccttacagtgggaaactat
gttttcacagggatctttacagctgagatgatcttcaagattatagcattggatccttat
aaatacttccaagaaagctggaatatatttgatagtgtcattgtaaccctgagtattgta
gagcttgggttggaaaatgtacctggaatgtctgtccttaggtcattccgtttgcttaga
gtctttaagcttgccaagtcttggccaactttaaatatgctgatcaaaatcattcacaat
tcagttggtgccctcggcaacctgacgctcgtcctggccatcattgtcttcatctttgct
gtagtaggcatgcagttgttcggaaagagttatacaagttgttattgtaagtctacaact
ggagactgcaggctccctcgctggcacatgagcgatttcttccactcctttctgatagtg
ttccgtgtgttatgtggcgagtggatagagaccatgtgggactgcatgaatgtagctggg
cagagcaagtgcctaactgtcttcctcctggtgatggtgattggaaaccttgtggttctg
aacctcttcctggccttattgcttagctcttttagtgccgataacctggcagccacaaat
gatgactgcgaaatgaataacctgcagattgcaatggggcgcatccacaggggtgtagcg
ttcactaaagccagtgtgcacagcttctttcaaagcagctgctttagaaggagacggaat
aaggttaaggaggaagatggcctgaaagattgcaagaagctggctgatatgtcaactcat
accacagtggagctgattaaagagccacagtgtgagaaagaggcattgggtaccgacagt
ggctctgagaatttcatcttcgatcccaccttgtctgtctctgtacccatagccactgct
gactctgaccctgagtgcaacatggacgatttaagcagttactcttcggacatgaatgaa
gataaagagaaactgtcagactgtatgagctcttcagagggcagcacagtggaccttcag
cccctgaaggagagaagagaatcacttgactttgagcttgaattacctgcggatgatcca
gaggcctgttttacacaaggctgtgtgaacaggttcccttgttgccaggtgaacgtggaa
aaaggcaaatggaagacatggtggaccctcaggcacaccagttacaggatagtggagcat
aactggtttgagtcattcatcatctttatgatcctgctgagcagtgctgcactggccttt
gaagacatacacattgagaaaaggaagaatgtaaagactgttttggaatatgcagataaa
gtgtttacctacatcttcatattggagatgcttctgaaatggctggcgtatggatttgcg
aaatatttcaccaatgcctggtgctggcttgacttcctgatagtgggcgtctctctgatc
agcctagtggccagcgctctcaattattcagagctttctgccatcaaatctctgcgtaca
cttcgagccctgagacctcttcgcgctctatcacgctttgaaggcatgagggtggtggtc
aacgctctttttggtgccattccctccatcgtgaatgtactgcttgtctgtctcatcttc
tggctcatctttagcatcatgggtgtcaacttgtttgctggaaagttttatgaatgtgta
aatgcaactaatggttctcgcatgagtatggaagtggtcatgaacagaaccgattgtgag
cagctgggcaacagtacccggtggaaaaatttaaagattacctttgataatgttggagca
ggatatctggctttgctgcaagtagctactttcaaaggctggatggatattatgtatgct
gcagttgacaaccgtggtgtggatcaacagcctcagtatgaagcaagtctgttgtactac
atctactttgtagtcttcatcatatttggctccttcttcacattgaatctttttattggc
gtcattattgacaactttaatcagcagaagaaaaagtttggaggtcaggacatttttatg
acagaggaacagaagaaatattacaacgctatgaagaaacttggttcgaagaaaccacaa
aaaccaattccccggccaacaaacaagctccaggctcttctttttgacattgttacaaat
caagctttcgacatcttcattatggtacttatatgccttaatatggtcactatgatggtg
gagtcagaaaatcagacccaagatacacgccatcatctgaagaagatcaacatggtgttt
gtggtaatcttcacaatggaatgtgtactaaagatgattgcacttcgacactactttttc
actcttggctggaacatctttgactttgtagtggtcattctctcgatagttggcacgttt
gtctctgaagtcattaagtacctgttttctccaaccttgatccgtgttgttcgacttgct
cggattggccgtattttgcgcctcatcaaaagtgccaagggaatacgtacccttttgttt
gccttaatgatgtctctcccagccctattcaacatcggacttcttctcttcttagtcatg
tttatctacgcaattgtcgccatgtcacaatttgcctatgtcaagaaggaggctggaata
gatgacatgtttaactttgagactttcggcaacagcatgttatgtttgtttcagatcact
acctctgcagggtgggatggactcctgtcacccatacttaacaagcctcctgattgcgat
ccaaataaggagcaccctggcagccaatataaaggtgactgtggcaacccagctattggt
atcatcttctttgtgagctacattattatatgcttcttgatcgtggtgaatatgtacata
gctgtgatccttgaaaacttcagtgtggccacagaggagagtgctgagccattaagtgag
gatgactttgaaatgttctatgaggtgtgggaaaaattcgatcctgacgctacacagttc
atagaatacaaacagttgtctgactttgccgatactcttgacccacctctgcgtatacct
aagcccaataggatccagctaattcacatggacttgccaatagtaagcggggagcgtatc
cactgcttggacatcttgtttgcatttacaaagcgtgtcctgggagaaagtggtgatatg
gatgttcttcgtgggcagatggaggatcgtttcatggcttctaacccttctaaggagtct
tatgagcccatcactacaactctacgccacaagcatgagttcatgtcagctatcatcatt
cagcgggccttcaggatgcatcttaggagacagaatgtaaaaatggactcagaaccatac
aaagaagctgtacaggagaatggaattgtttcaaacaggtgtaacaaccactctgcttca
gacaaatctgaaacatcatcctctaccattgtcccaccatcatatgccagtgtaacacaa
tctggtaagaacaaatatgagaaagacaagagggaaaaggaaataaaaggaaaagataac
aatgagcggtaa
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integrated database retrieval system
