Tachysurus vachellii: 132854473
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Entry
132854473 CDS
T09596
Symbol
skic3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132854473 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132854473 (skic3)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132854473 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_11
TPR_16
TPR_17
TPR_12
TPR_9
TPR_CcmH_CycH
ANAPC3
ChAPs
HAT_PRP39_N
ARM_TT21_C
PknG_TPR
Retrotran_gag_2
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
132854473
NCBI-ProteinID:
XP_060738886
LinkDB
All DBs
Position
12:14675107..14699449
Genome browser
AA seq
1589 aa
AA seq
DB search
MTEALCGACALFSCARKLLCTVKMSNKDVKSALKSARDAIKNKEFKEALKHCKAVLKLEK
NNYNAWVFIGVAASELEQPEQAQTAYKKAAELEPEQLLAWQGLANLYEKSDQADFKGELP
KIYQKLIKLYEISDKVKCFEVSRKLVDIYQTEKNYLQVARVWQHLIQVREAEDGIENFEL
IELWRELIRLLLVSVDQQDNETQQHLLSAFEKALRLTENVPSEDHKQLIQDYIKCLSKLP
HEVMKMKEMCDLMLTLYPKVSYPLEVLAQHYLLLDDCSEETVGCYTRLLELDAVSSLAHF
GLGKKALQDKKYEDAFKSFGLGLKQMRSSIIGWYGLAQAELKMHKYTDSALSSSQGLKSS
TGFSEDWTHKLMRVKLEALVRAGTDPSADEALGMLSQMPDANNDPALLVLKVRAYLQKRK
LEEALQVSSELLSSHPCSVEGLIVKGLTHRAKNEYQQAEQCFTEAVSQRPDSGELYFLLG
QLYWNMGEDTRRDKSKVHTHLLKAAKLDPHLGSVFRYLGHYYREVAKEQGRARGCYKKAF
ELDSTDTEAGAATVDLSMEQGDMDYALAVLQAVTERATPGSAKWAWMRRGLYHLKVGQNA
QAIADLQAALRADREDWVCWECLGEAYLNRHSFTAALKAFAQAHMLQPSSIYSLYQMASI
KQILGRYKEAAVEYRQIIKSEEYVPALKGLGECLLAMAKTAMEDYLDGRAVDLIQEAITY
LFRAVQKRADLSCLWKLLGDACTKCSSVSPNRICVLVPGVLCGTEPSDKPHTLDQNELLS
LGERCYGRALKLMPDTPSLWCDLGLNYYHQSRLIWSTSTEQDVQSLLEKALQCVKKAVML
DSGNHMYWNALGVVAMTKGIENFALAQHSFIKSVRTEPNNVVAWTNLGTLYFKKGNIELA
HEAFKIAQSLEPLYVNCWIGQAFIAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCST
LLDKSNRDSELYRYNIVQMNAVSAAQVALTKYTERIQTDAEAFVMLGFLNEHMQLKKQAT
RAYKRAVELLQNSPQTEEISFALRGYARALCDMDQWEEAIRHYSSTSLEELHDHTGMALA
CFRAGRLQESVNAYEKALAVASKEKEKAYILTALALLQHRLGNMDTAKTLLFKCSLLKEP
IPESLLCLCALGLVHGDVTLASAALSELLKLDGALRGAVEEHCLLTCTLLALQGNYSAVQ
REASRAVFRNPGNPSLWALLSRLVPQFCPSKADGGAVAGSVACHASMTLGKRALLYSGIN
QLASGRHSGEDRRKNALKTIQRAILLCPDDPAVWAGLMAACHTENVACALSGSSPCREGL
EKVLMTLVSEKVKSLQREDGLLAQALEGWVLQQTVTGLKQSGHYDEAEALCSQVLNVSPE
HPAVFLLLRQVQCECLLLSDARDCIPSAVLDQLSAAVMANPTSVSAWHWLADVYRSQGLL
AQASVALRQSLQLASQLGHYSGKLSSLLRLALLSLTPCMAGVGGVEWSSLVREACTEVQK
LALCPVALLFQALLQFSIKMGARETRRLLEKIVYGSGSRDMKTVAGVARWYLLRHLHAKD
DLELIDTLMMEAEAAGDLRLLEFHKQLYP
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagcattgtgtggcgcatgcgcactcttcagttgtgcacggaagctgctgtgc
actgtgaaaatgtcaaataaagacgtaaaatcggctctaaaaagtgccagggacgctata
aaaaacaaggagtttaaagaagctctgaaacactgcaaggctgttctgaagcttgagaag
aataactacaatgcctgggtgtttattggagttgcagcgagtgagctggagcagcccgaa
caggctcagacggcctacaagaaagctgcagagcttgaacctgagcagctacttgcgtgg
cagggccttgcaaacctatatgaaaaaagtgatcaagcagattttaaaggcgagcttccc
aaaatctatcaaaaactcataaaactgtatgaaatctctgataaagtcaaatgctttgaa
gtgagcaggaagttggtggacatttatcagacagaaaagaactacttacaggtggcgagg
gtgtggcagcatctcattcaggtgagagaggcagaggacggtattgagaactttgagctg
atcgaattatggagagaactgatcaggctgctcttggtctcagtggaccagcaggacaat
gagactcagcaacatctcctgtctgcatttgaaaaagctcttcggctaactgaaaatgtg
cctagtgaggatcataaacaactcatccaggattacattaaatgcctctcaaaactccct
catgaagtaatgaagatgaaggagatgtgtgatctcatgctgaccctttacccaaaagtc
tcttatcctctggaagttctagcacaacattatttattattagacgattgcagtgaagaa
actgtcggctgttatactcgtctcttggagctggatgcggttagttccctggcccacttt
ggtctgggtaaaaaagctctacaggacaagaaatatgaggatgctttcaagagctttggc
ctgggactgaagcagatgcgctccagtatcattggttggtacggtctcgctcaagctgag
ctgaaaatgcacaaatacactgatagtgctttgtcctccagccaagggctgaagtcgagt
acagggttttctgaagactggacccacaagctgatgagagtaaagctggaggctctggta
agagctggaacagatcccagtgcagatgaagctctagggatgctttctcagatgccagat
gctaacaatgaccctgctctattagtgttaaaagttagagcctatttacaaaagcggaag
cttgaagaagctttgcaggtgtcttctgagttgctgagctcacatccttgctctgtggaa
ggtttaatcgtaaagggactgacacatagagctaaaaacgaataccagcaggcagagcaa
tgttttactgaagctgtgtctcagaggccagacagtggggagttgtacttcctactggga
cagctttactggaacatgggagaagacacacggagagataagagcaaagtacacactcat
ctgctgaaggctgctaagctggatccccatcttggctctgtgtttcgctacctgggtcac
tactacagggaagtggccaaagagcagggtcgagctagagggtgctacaagaaagcgttt
gagctggactccactgacactgaggctggcgctgccactgtggacctcagcatggagcag
ggagacatggactatgctttagcagttcttcaggcagtgacagagagagcaactcctggt
tcagctaaatgggcctggatgaggagaggcctgtatcatctgaaagtgggccagaatgca
caggctattgcagacctgcaggcagcattgagggctgatcgtgaggactgggtgtgttgg
gagtgtttaggcgaggcctatttgaaccgccacagctttacagctgccctcaaagctttt
gctcaggcccacatgctgcagcccagctccatctacagcctctaccagatggcctccatc
aaacagattctgggcaggtacaaagaggcggcagtggagtaccggcagataataaaaagt
gaagagtatgtgccagctctgaagggacttggagaatgtcttttggccatggctaaaaca
gcaatggaggattacctggatgggagagcagtagaccttatacaggaagccattacatat
ttgtttagggcagtgcagaagcgtgcggatctgtcatgtctgtggaagttgcttggagat
gcctgtaccaaatgcagttctgtttctcctaaccgaatctgtgtgcttgtgcctggtgtg
ctatgtggaacagagccttctgataagcctcacacactggaccagaatgaactgctcagt
ctcggagagaggtgctatggccgtgctctgaaactgatgccagatacaccaagcctgtgg
tgtgacctgggcctaaactattaccaccagtcgaggttgatttggtccacatctacagaa
caggatgtccagtcactgctggagaaagctctgcagtgtgttaaaaaggcagtcatgctg
gacagtgggaatcacatgtactggaatgcactaggggttgtggctatgaccaaaggaatt
gaaaactttgcccttgcacagcacagtttcattaagtcagtcagaacagagccaaataat
gttgtagcatggacaaaccttggaaccttatattttaagaagggcaacattgagcttgca
catgaggccttcaagatagctcagtctctggagccgctgtatgtgaactgttggattgga
caggcgttcattgctgagacagtaggaagctatgacaccatggatctcttcagacacacc
actgagctcagcactcatactgaaggcgtgaagggttatgcatattgggtctgttctact
ctgctggacaaaagtaaccgagactcagaattgtaccgctacaacatagtccagatgaac
gctgtctcggctgcacaggtggccttaaccaaatatacagagagaattcagacagacgct
gaagcttttgtgatgttgggcttcctgaatgagcacatgcaactgaaaaagcaggcaact
agagcctataagagagctgtggagttgctccagaacagcccacaaactgaagaaatcagc
ttcgctctcagaggctacgctcgggccctctgtgacatggatcagtgggaagaagctatc
cgtcattattcctccacatctctggaggagctgcacgatcacacaggcatggctctagcc
tgctttcgagcaggacgcctgcaggagagtgttaatgcctatgagaaagctcttgcagta
gcttccaaagagaaggagaaagcttatatactaacagctctagctttactacagcaccga
ctggggaacatggacactgccaaaactttactctttaagtgctccttgctgaaggagcca
attccagagagtttgctgtgtttatgtgctttgggcctggtccatggagatgttaccctg
gctagtgctgcactttcagagctgttgaagctggatggtgcattgagaggagctgtggag
gagcactgcctgcttacttgcacacttctggccctacagggcaactacagtgctgtgcag
agagaggcttccagggcagtattcagaaacccaggaaatccatccctctgggcactgctg
tccagactggtgccacagttctgtcccagcaaagctgatggtggagctgtggcaggtagc
gtggcatgtcatgctagcatgactctaggaaagagggcactgctgtacagtggaataaat
cagttggcctcaggcagacactctggagaagacaggaggaaaaatgctctaaagaccatc
cagagagctattctgctctgtccagatgatcctgcagtctgggcagggcttatggctgca
tgtcacacagagaatgtagcctgtgccctgtcaggctcctccccatgcagagagggtcta
gagaaagttcttatgacactggtgtcagagaaagtgaaaagcctgcagagagaggatggg
cttttggctcaggctctggaaggctgggtgctgcagcagactgtgacaggactcaaacag
agcggccactatgatgaagctgaagccctgtgttcacaggtgttgaatgtgtctcccgag
catcctgcagtgttcctgttgctcaggcaggttcagtgcgagtgcctcctcctgtctgat
gccagagactgcatcccctcagcagtactggaccaactgagtgctgctgtcatggccaac
ccaacttcagtgtctgcttggcactggctggcagacgtgtaccgctctcaggggttgctg
gcacaggcatcggtggctctgagacagagtctgcagcttgcctctcagctcggtcactac
agcgggaagctcagcagcctgctgcgactcgccctgctctccctcaccccctgcatggct
ggagttggaggagtggaatggagcagtcttgtacgtgaagcctgtactgaggtacagaag
ctggctctgtgtcctgtggctttactttttcaggctctgctccagttctccatcaagatg
ggagccagggagacacggcgtctgttggaaaagattgtttatggatcaggttcaagagac
atgaaaacggtggcaggagttgctcgctggtacctcctgcgccacctgcatgccaaagac
gacctggagctgatagataccctgatgatggaggctgaagcagcaggagacttgaggctg
ctggagttccataaacagctgtacccctga
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integrated database retrieval system
