Tachysurus vachellii: 132856085
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Entry
132856085 CDS
T09596
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132856085 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132856085 (cnot1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132856085 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132856085 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
132856085
NCBI-ProteinID:
XP_060741469
LinkDB
All DBs
Position
13:complement(2769265..2793476)
Genome browser
AA seq
2378 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVFLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFPQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFVKQKLPDLLRSYVDADLGGSQEGGFQDIAIEA
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIALQSISAPGSGIWSDGKDKSDSSQLHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHAGFMIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQQSLMSPEVFC
FADYPCHAVVIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPTIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKARATSTSSLDAISPVDPLTAMGSLNL
GGSATSHTQNIQGFPTPLSSAFSNPQSPAKAFPPLTTPNPSTAFGGISSLSSQLPGPLSS
GSLSGIGSGLGMPAVSSDPFGPRKMSTPGLNPPTFQHCRFKNSDLSQVWPEANQHFSKEI
DDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQ
YPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNR
LKDYPQYCQHLASIGHFLQFPHHLQEVMYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QSQPPKAPQPGQASTLVTTTTTTTTVAKTSTITRPTAVGFKKDMPPSINTTNIDTLLVAT
DQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPQNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLEEQLSAPKKE
TKPPEEMLPVVTSAAPSAPAATATAATTGPPTPQFSYHDINVYALAGLAPHININSTIPL
LQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAH
HMMRNLTAGMAMITCREPLINNITANLKNTFAAALRAPTPQQREMMEEAANRIAQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVG
GVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQQQQVWPTDDMAHIYDKCISD
LEQHLHAIPPALAMNPQAQALRSLLEAVVMARNSRDGITALGLLQKAVEGLLDATSGADA
ELLLSYRECHLLVLKALQDSRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTCAHS
RANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQ
HNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDH
DVRQADFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAW
LELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPFLRNVELNKPMQILYKGTLRV
LLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEI
NIAPRILTNFTSVMPTQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
SHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAT
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
accaagaaaaactacagagccagccagcaagaaatacagcatattgtgaatcgtcacggc
cctgaggcagacaggcatctattacgttgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgcgtgttc
cttattacgaagccaaattttatttcaacgctctgctacgctattgacaatcctctgcac
tatcagaagagtttgaaaccttcgccacatttgtttcctcaactaagtaaagttcttaaa
ctaagcaaggtccaggaggtgatctttggcctcgctcttctgaactcgagtaacacagac
cttcgagggttcgcggctcagtttgtaaagcagaagctgcctgacctcctgcgctcgtac
gtggacgccgacctcggaggtagccaggaaggtggcttccaggacattgccatagaggct
ctgcacctgctgctctcacacctcctgtttgggcagaaaggctccagcggagtcgggcaa
gaacagatcgacgccttcctcaaaacactgtgcagagatttcccgcaggagcgctgccct
gtggtgcttgcaccactgctgtaccctgagaaacgggacattctcatggacaggatccta
ccagactctggggagttagccaagaccatgatggagagttccctcgcagagtttatgcag
gaagttggctatggtttttgtgcaagtgtcgacgaatgcaggaacataatcctgcagtat
ggggtgcgagaggtgaccgccagccaggtggccagagtgctcggcatgatggctcgcact
cactctggcctttctgatggaattgcgctacagtccatctctgctccgggtagcggaatc
tggagtgacgggaaagacaaaagcgacagctctcaactgcacacctggaacgttgaagtt
ctgatcgatgtcgttaaagagctcaaccccaatctgaacttcaaagaggtcacctacgag
ctggaccatgcaggcttcatgatccgggacagtaaaggcctgcagatcgtagtgtacggt
attcagagaggtctgggtatggaggtcttccctgtggacctcatctacagaccatggaag
catgcagagggacagctttcattcatccagcaatccttgatgagtccagaggtcttctgc
ttcgccgattacccgtgtcacgccgtcgtcatcgacatcctcaaagcgccgccggaggac
gacaacagggagatcgctacgtggaagagcctggacctggtggagagtctgctgcgactg
tctgaggtgggccagtacgagcaggtgaaacaacttttcagcttccccatcaagcactgt
ccggacatgctggtgctggcgctgctgcagatcagcacatcctggcacacgctgcgccat
gagctcatctctacgctcatgcccattttcctgggcaaccaccccaactcggccatcatc
ctgcattacgcctggcacggacagggccagtcaccatctattcggcagctcatcatgcac
tcgatggcagagtggtacatgaggggggagcagtatgaccaggccaagctctctcgtatc
ctggacgtggctcaggacttgaagtctctgtctatgctgctaaacggtactccgtttgcc
ttcgttattgatcttgctgcactcgcctctcgccgtgaatacctcaaactagacaaatgg
ctgaccgataaaatccgagagcacggggagccgttcattcaggcttgcgtaaccttcctg
aagaggcgctgtcctaccatcatgggaggtctggctccggaaaaagaccagccaaagagt
gcacaactgcctccagaaactttggctactatgctggcctgtttgcagtcctgtgcaggg
agtgtgtcacaagagctgtctgagaccatcctgaccatggtggccaactgtagcaacgtg
atgaacaaggctcgccagcctcctccaggtgtcatgccaaaggcccgggcaaccagcacc
agcagtttggacgccatttccccggtggaccctctcactgcgatgggctctctcaatctg
ggcggctcagccacttctcacactcagaacattcaaggcttccccacgcctctgagctcg
gccttcagcaaccctcagtcccctgccaaggccttcccccctctcacgacccctaaccct
agcacggcattcgggggcatcagcagcctctcctcacagctcccaggtccgttgagttca
ggcagcttaagcgggattggatcaggcttgggcatgccagcagtgagcagtgatccgttt
ggcccaagaaagatgagcacaccagggctgaacccacccaccttccagcattgtaggttt
aagaactctgacctctctcaggtgtggcccgaggctaaccagcacttcagtaaggagatc
gacgacgaagccaacagctacttccagcgaatctacaaccacccccctcacccaaccatg
tctgtggatgaggtgctggagatgctgcagaggtttaaggactccaacatcaagcgggag
cgggaggtgtttaactgcatgcttcgcaaccttttcgaggagtaccgtttctttcctcag
tacccagataaagagctacacatcaccgcatgcctgtttgggggcatcatcgagaagggt
ctggttacctacatggcccttggtctcgccctacgatacgtcctggaagccttgcgcaaa
ccctacggctccaaaatgtattacttcggcatcgccgcactggaccggttcaagaacaga
ttgaaggactacccacagtattgtcagcacttggcctccataggccattttctgcagttt
cctcaccatctgcaggaggtaatgtatatcgagtacggccagcagtcccgtgaccctcca
gtgaagatgcagggctccattactacaccaggcagcctggcgttggcccaagctcaggct
cagtcccagccccctaaagcccctcagcctggccaagccagcaccctggttacaaccaca
acaaccaccaccaccgtggcaaaaacctccaccatcaccaggcccactgcagtaggtttt
aagaaggatatgccaccttcaataaacaccacgaacatagacacgctactggtggctacg
gaccaaacggaaaggatcgtggagcctccggagaacattcaggagaagatagctttcatc
tttaacaacctgtcccaatccaacatgactcaaaaggtcgaagagctgaaggagaccgta
aaggaggagtttatgccctgggtgtctcagtacctcgtgatgaagcgcgtcagtatcgag
ccaaacttccacagcctttactcaaacttcctcgacactctgaagaatccagagtttgtt
aaaatggttctgaacgaaacctacagaaacattaaggttctcctgacctctgacaaggca
gctgctaacttctctgatcgatccctgctgaagaacttgggccactggcttggcatgatc
accctggcaaagaacaaacccattctgtatactgatttggagttaaagtctctgttactg
gaggcctacgtgaaaggccaacaagagctgctatacgtggtcccgttcgtggctaaagtc
ctggagtccagtctgcgtagtgtggttttcagaccacagaacccttggaccatggccatc
atgaacgtattggccgagctccatcaggagcacgatctgaagctaaacctgaagtttgag
atcgaggtgctttgtaagaacctgtctctagacattaacgacctgaaacctgggaacctg
ctgaaagacaaagaaaagctgaaaaacctggaggagcagctgtccgcaccaaagaaggaa
accaaacctcctgaagaaatgttgcctgtagtcacttcagctgctccttcggctcctgct
gccacggcgaccgccgccaccacggggccgccaacaccacagttcagctaccatgacatc
aatgtgtatgcattagcaggcctggccccccacatcaacatcaacagcaccatcccgctg
ctgcaggcacatccccagctgaagcagtgcgtgaggcaggcgatcgagcgcgccgtgcag
gaactcgttcaccctgtggtggaccgttccatcaagatcgcaatgaccacatgcgagcag
atcgtcaggaaggactttgctctggactctgaggaatcgcacatgcgtgtcgctgctcac
cacatgatgcgcaatttgaccgccggaatggccatgatcacctgcagggagccgcttatt
aataacatcaccgccaacctgaaaaacaccttcgctgctgccctcagggctcccacaccc
cagcagagggaaatgatggaagaggcagctaaccgcatcgctcaggataactgtgagctg
gcctgctgcttcatccagaagactgctgtggagaaagctggaccagagatggataagaga
ttggccactgagttcgagctgaggaaacacgctcgtcaggagggccggcgctactgcgac
cccatggtgctcacttaccaagcagagcgcatgccagagcagatccgccttaaggtgggc
ggtgtggatcctaagcagctggctgtttatgaagagtttgcccgcaacgtgccaggcttc
ctgccaagcaacgatctttctcagcccactggatttctggcacagcctatgaagcagcag
cagcagcaggtttggcctacggacgacatggcacacatctatgataagtgcatctctgac
ctagaacagcacttgcatgccattcctccagctttggccatgaacccacaagcccaggcc
ctgcgcagcctgttagaggctgtggtaatggcacgtaactcccgcgacggcatcaccgca
ttgggtctgctgcagaaagctgtcgagggtctgttggatgccactagcggcgcagacgcc
gaactgctgctgagctacagagagtgccacttgctggttctgaaggctctgcaggacagc
cgtgcctacgggccacaatggtgcaacaagcaaatcaccaggtgcctgatcgagtgccgt
gacgagtacaagtacaatgtggaggcagtcgagctcttgatcagaaaccaccttgtcaac
atgcagcaatacgacctgcaccttgcacagtccatggaaaacggtctgcactacatggcc
gtggcttttgctatgcagctggtaaagttgctgctggtggacgagcgcagcgtgagtcac
atcactgaagcagacctgttccacaccatcgagactctcatgaggacatgcgcacactcc
agagctaatgcacccgaaggcctgccccagctgatggacgtggtccggtccaattacgag
gccatgatcgaccggcaccacggaggacccaatttcatgatgcactctgggatctcacaa
gcatcagagtacgatgatcctccaggcctgcgtgagaaagcggagtatctgctgagagag
tgggttaatttgtaccactcagctgctgctggcagggacagcaccaaagccttttctgcc
ttcgtgggccagatgcatcagcaaggcatcctgaaaactgacgacctcatcactcgtttc
ttccggctgtgcacggagatgtgtgttgaaataagctaccgtgctcaggccgagcagcag
cacaacccggccgccagcgccgccatcatccgcgccaaatgctaccacaacctggatgct
ttcgtccgcctcatcgccctgctcgttaagcactccggagaggccacgaacacggtcacc
aagatcaacctgctaaacaaggtattgggcatcgtagtgggtgtgctgatccaggaccac
gatgtgaggcaggcagattttcagcagttgccgtaccaccgcatcttcatcatgctgctg
ctggagcttaacgcccctgagcatgtgttggagaccatcaacttccagaccctcactgcc
ttttgcaacacctttcacatcttgagaccaactaaagcacctggttttgtatacgcctgg
ctggagctcatctcacatcgaatcttcatagcccggatgctggcgcacacgccacagcag
aagggatggcccatgtacgcccagctgctgatcgacttgtttaaattcctggcccccttc
ctgaggaacgtagagctcaacaaacctatgcaaatcctctataagggcaccttgcgggtt
cttctggtcctgctgcacgatttcccagagttcctgtgcgattatcactatggcttttgt
gacgtgattccacccaactgcatccagctgagaaacctgatcctgagtgcctttccacgc
aacatgaggcttccggaccccttcactcccaacctcaaggtggacatgctgagtgagatt
aacatcgctccacgcattcttaccaacttcaccagcgtgatgcccacccaattcaagaag
gatctggactcgtacctgaagactcgctcgcccgtcacgttcctctcagagctgcgcagc
aacctgcaggtgtccaatgagccaggcaaccgttacaacatccagctgatcaatgctctg
gtgctgtatgtaggcacacaggccatcgctcacatccacaacaagggtagcaccccctct
atgagcaccatcactcactccgcacacatggacatcttccagaacctcgcagtggacctg
gacactgagggtcgctatctgttcctcaatgctattgccaatcagctgcgttacccaaac
agccacacgcactacttcagctgcaccatgctctacctgttcgctgaagctaacgcagag
gccattcaggagcagatcactcgggtactactggaacgcttgatcgtgaacaggccacac
ccctggggattgctcatcaccttcatcgagctgatcaagaatcctgcctttaaattctgg
agccatgactttgtgcactgcgcaccggagatagagaaattgttccagtctgttgctcag
tgctgcatgggacagaagcaggcccagcaggtgatggagggcacgggtgccacttag
DBGET
integrated database retrieval system
