KEGG   Tachysurus vachellii: 132860765
Entry
132860765         CDS       T09596                                 
Name
(RefSeq) collagen alpha-1(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc04510  Focal adhesion
tvc04512  ECM-receptor interaction
tvc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132860765
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132860765
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132860765
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:tvc00535]
    132860765
Proteoglycans [BR:tvc00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   132860765
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 132860765
NCBI-ProteinID: XP_060748020
LinkDB
Position
2:complement(35003797..35028879)
AA seq 681 aa
MPRATGFRESLYVILLVMCLSTSAQKYVGQVGPPGPTGVPGFDGIAGERGEDGDVGSAGL
DGEPGKPGSAGLPGLPGDDGLTGPTGDAGPSGPIGQKGEPGKPGHRGEAGIGPDGPLGPP
GPGGLPGELGKVGPTGAMGVRGPEGPRGPTGPRGAAGSQGGTMELCPNACPPGTPGHPGL
PGMKGHKGVKGEAGEPGKQGHMGEVGDQGAPGEVGAYGSRGLQGIQGATGIMGSKGEMGP
RGNDGDPGPQGVVGATGDQGQRGLMGESGPRGEQGSQGQRGITGLPGPKGESGLPGVAGR
DGIPGLPGVKGSLGKSGNPGEVGLQGIPGLPGVSGPKGAQGEKGNAGKPGLLGTMGSAGK
PGERGNHGEVGPVGPIGGSGDRGEPGPTGPMGNPGSRGSKGDAGLPGLPGSPGTPGEKGQ
RGDQGEIGSKGEQGGQGAEGSPGDKGDVGEPGEPGPKGTTGNPGERGNRGPEGARGQPGI
EGPTGSPGPRGVQGNRGVPGPRGSQGPAGKGPGDQNIKQVCMRVMQEQLAQLAASLRRPE
SGAIGLPGRPGPPGPPGLPGDSGFPGQAGARGLPGLKGPPGTIGLKGPKGETGDRGDRGQ
TVRGPKGMPGPPGLPGEPGKPAYGQDGHDGGSGLPGLPGQPGVPGPPGPAGPSGHCDPSA
CNLGTASQSLTNYDLKGPAGY
NT seq 2046 nt   +upstreamnt  +downstreamnt
atgcctcgcgctacaggcttccgcgagtcgctttatgtgattttgttggtgatgtgtctt
agcacttctgctcagaaatatgtgggtcaagtcggtccaccaggcccaactggtgtcccg
ggattcgacggaattgccggggaaagaggtgaagatggagacgttggctctgcaggactt
gatggtgagcctggaaaacctggttctgctggacttcctggactgcctggagatgatggt
ttgactggacccacgggagatgctggcccaagtggccccattggacaaaagggagagcca
ggaaaacctggacatcggggagaagctggtattgggcctgatggacccctgggaccacca
gggcctggtggacttccaggtgaacttggtaaagttggcccgactggagccatgggtgtc
agagggccagaaggaccccgtgggccaacaggacctcgtggtgctgcaggcagtcagggt
gggacaatggaactgtgccccaatgcgtgtccacctggcacacctggccaccctggatta
cctggcatgaaaggccacaaaggtgtgaagggtgaggccggagaaccaggtaaacaggga
cacatgggagaagtgggagaccagggtgcccctggagaggttggagcctatggctcaaga
ggtctgcaggggattcaaggagccactggaattatgggttccaaaggagaaatgggacca
cggggcaatgatggtgatccaggtcctcagggggtcgttggtgctactggtgatcaagga
cagaggggcttaatgggagaatctggtcctaggggagaacaaggatcacagggacaaaga
ggcatcactggacttccagggccaaagggtgagagtggtttacccggtgtagctgggcgt
gatggaattcctggattacctggagttaagggcagccttgggaaatctggaaaccctgga
gaggtcggacttcaaggaatacctggcttacctggtgtttcaggaccaaagggagcccaa
ggtgaaaagggcaatgctggaaagccaggccttcttggaactatgggatctgctgggaag
cctggagaacgtggaaatcatggagaagttggacctgttggcccaattggtggatcggga
gatagaggtgagccagggccaactggacctatggggaacccaggatctagaggctctaaa
ggtgacgctggtcttcctggacttcctggatcaccaggcacacctggagagaaaggtcaa
aggggggaccaaggggaaatcggatctaaaggagaacagggagggcaaggtgcagaggga
tcccctggagacaaaggagatgttggggagcctggagaacctggacctaaaggaacaact
ggtaatccaggagaacgtgggaacagaggccctgaaggtgcccgtgggcagcctggcatc
gagggacccacaggtagtcctggaccccgtggtgtacaggggaaccgaggagttccaggt
cctcgtggttctcagggccctgcagggaaagggccaggtgatcagaacattaaacaagtt
tgtatgcgagtaatgcaggagcaactggcccagctagctgccagtctgaggcggcctgag
tctggtgctattggtctgcctggcagacctgggccccctggtcctccaggtttgccagga
gacagtggtttccctggacaagctggtgcaagaggactccctggcctcaaagggcctcct
ggaacaataggtcttaaagggcctaaaggtgaaaccggagatagaggagatagagggcaa
actgtacgaggtccaaaagggatgccaggaccacctggactgccaggtgagcctggtaag
ccagcgtatggtcaagatggccatgatggtggaagtggtttaccaggtcttcctggacag
cctggtgttcctggacctcctggccctgcaggaccttctggtcactgtgacccatcagca
tgcaacttagggactgcttcccagtctctcacaaactatgaccttaaagggccagctggt
tactga

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