Tachysurus vachellii: 132860765
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Entry
132860765 CDS
T09596
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132860765
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132860765
09142 Cell motility
04820 Cytoskeleton in muscle cells
132860765
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tvc00535
]
132860765
Proteoglycans [BR:
tvc00535
]
Extracellular matrix (ECM) proteoglycans
Others
132860765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132860765
NCBI-ProteinID:
XP_060748020
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Position
2:complement(35003797..35028879)
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AA seq
681 aa
AA seq
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MPRATGFRESLYVILLVMCLSTSAQKYVGQVGPPGPTGVPGFDGIAGERGEDGDVGSAGL
DGEPGKPGSAGLPGLPGDDGLTGPTGDAGPSGPIGQKGEPGKPGHRGEAGIGPDGPLGPP
GPGGLPGELGKVGPTGAMGVRGPEGPRGPTGPRGAAGSQGGTMELCPNACPPGTPGHPGL
PGMKGHKGVKGEAGEPGKQGHMGEVGDQGAPGEVGAYGSRGLQGIQGATGIMGSKGEMGP
RGNDGDPGPQGVVGATGDQGQRGLMGESGPRGEQGSQGQRGITGLPGPKGESGLPGVAGR
DGIPGLPGVKGSLGKSGNPGEVGLQGIPGLPGVSGPKGAQGEKGNAGKPGLLGTMGSAGK
PGERGNHGEVGPVGPIGGSGDRGEPGPTGPMGNPGSRGSKGDAGLPGLPGSPGTPGEKGQ
RGDQGEIGSKGEQGGQGAEGSPGDKGDVGEPGEPGPKGTTGNPGERGNRGPEGARGQPGI
EGPTGSPGPRGVQGNRGVPGPRGSQGPAGKGPGDQNIKQVCMRVMQEQLAQLAASLRRPE
SGAIGLPGRPGPPGPPGLPGDSGFPGQAGARGLPGLKGPPGTIGLKGPKGETGDRGDRGQ
TVRGPKGMPGPPGLPGEPGKPAYGQDGHDGGSGLPGLPGQPGVPGPPGPAGPSGHCDPSA
CNLGTASQSLTNYDLKGPAGY
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcgctacaggcttccgcgagtcgctttatgtgattttgttggtgatgtgtctt
agcacttctgctcagaaatatgtgggtcaagtcggtccaccaggcccaactggtgtcccg
ggattcgacggaattgccggggaaagaggtgaagatggagacgttggctctgcaggactt
gatggtgagcctggaaaacctggttctgctggacttcctggactgcctggagatgatggt
ttgactggacccacgggagatgctggcccaagtggccccattggacaaaagggagagcca
ggaaaacctggacatcggggagaagctggtattgggcctgatggacccctgggaccacca
gggcctggtggacttccaggtgaacttggtaaagttggcccgactggagccatgggtgtc
agagggccagaaggaccccgtgggccaacaggacctcgtggtgctgcaggcagtcagggt
gggacaatggaactgtgccccaatgcgtgtccacctggcacacctggccaccctggatta
cctggcatgaaaggccacaaaggtgtgaagggtgaggccggagaaccaggtaaacaggga
cacatgggagaagtgggagaccagggtgcccctggagaggttggagcctatggctcaaga
ggtctgcaggggattcaaggagccactggaattatgggttccaaaggagaaatgggacca
cggggcaatgatggtgatccaggtcctcagggggtcgttggtgctactggtgatcaagga
cagaggggcttaatgggagaatctggtcctaggggagaacaaggatcacagggacaaaga
ggcatcactggacttccagggccaaagggtgagagtggtttacccggtgtagctgggcgt
gatggaattcctggattacctggagttaagggcagccttgggaaatctggaaaccctgga
gaggtcggacttcaaggaatacctggcttacctggtgtttcaggaccaaagggagcccaa
ggtgaaaagggcaatgctggaaagccaggccttcttggaactatgggatctgctgggaag
cctggagaacgtggaaatcatggagaagttggacctgttggcccaattggtggatcggga
gatagaggtgagccagggccaactggacctatggggaacccaggatctagaggctctaaa
ggtgacgctggtcttcctggacttcctggatcaccaggcacacctggagagaaaggtcaa
aggggggaccaaggggaaatcggatctaaaggagaacagggagggcaaggtgcagaggga
tcccctggagacaaaggagatgttggggagcctggagaacctggacctaaaggaacaact
ggtaatccaggagaacgtgggaacagaggccctgaaggtgcccgtgggcagcctggcatc
gagggacccacaggtagtcctggaccccgtggtgtacaggggaaccgaggagttccaggt
cctcgtggttctcagggccctgcagggaaagggccaggtgatcagaacattaaacaagtt
tgtatgcgagtaatgcaggagcaactggcccagctagctgccagtctgaggcggcctgag
tctggtgctattggtctgcctggcagacctgggccccctggtcctccaggtttgccagga
gacagtggtttccctggacaagctggtgcaagaggactccctggcctcaaagggcctcct
ggaacaataggtcttaaagggcctaaaggtgaaaccggagatagaggagatagagggcaa
actgtacgaggtccaaaagggatgccaggaccacctggactgccaggtgagcctggtaag
ccagcgtatggtcaagatggccatgatggtggaagtggtttaccaggtcttcctggacag
cctggtgttcctggacctcctggccctgcaggaccttctggtcactgtgacccatcagca
tgcaacttagggactgcttcccagtctctcacaaactatgaccttaaagggccagctggt
tactga
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