Trichosurus vulpecula (common brushtail): 118844108
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Entry
118844108 CDS
T10126
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118844108 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118844108 (CNOT1)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118844108 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118844108 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118844108
NCBI-ProteinID:
XP_036607824
LinkDB
All DBs
Position
3:399437093..399533945
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQNVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTAALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPPDVSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYESKMYFFGIAALDR
FKNRLKDYPQYCQHLASISHFMRFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLEEQLSA
PKKDVKQPEALPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNP
TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMR
IAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYEKCITE
LEQHLHAIPPALAMNPQSQTLRSLLDAVVMSRNSRDAIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHS
RGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLLQDHDVRQNEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELSKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacaacatattgtgaatcgacacggc
ccggaggcagataggcatttattacgctgcctattttctcatgtggatttcagtggcgat
ggtaaaagtagcggcaaagattttcatcagactcagtttctgattcaggagtgtgcatca
ctgattacaaagccaaattttatctcaacgctgtcctatgccattgataatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaggttcaagaggtcatttttggtcttgctctcttgaattcttccagctcagat
ctacgaggttttgctgcccagtttgtcaaacagaagcttccggatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagacattgccatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcttttggggttggacag
gaacagattgacgcttttcttaagacactgcgtagagattttccccaggaacgttgtcct
gtggtgcttgcaccactactttactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagctaaaaccatgatggagagctctctggcagacttcatgcaa
gaagtaggctatggcttctgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgagaagtcacagctgctcaggttgccagggttttgggaatgatggctcggact
cattcagggttgacagatggcattcctttacaatctatctcagctcctggcagtggaata
tggagtgatgggaaagataaaagtgatggagcacaggcccatacctggaatgttgaagtc
ttgattgatgttctcaaagagttgaatccaagtctgaatttcaaggaagtaacttacgaa
ttggaccatcctggatttcaaattcgtgacagcaaaggacttcagaatgtggtatatggc
attcagagaggtctaggcctggaagtcttcccagtggaccttatttataggccttggaaa
catgcagaaggccagctctccttcattcagcattcactgataaatccagagatcttctgt
tttgctgactatccctgtcacacagttgccactgatatcctcaaagcgccaccagaggat
gacaatcgagaaattgccacatggaagagcctggacttgattgaatctctcttgagactg
gcagaggtggggcagtatgagcaggtcaaacagctcttcagctttcccatcaagcactgt
ccagatatgttggtattggccttactgcagatcaacacttcttggcatacactgcgccat
gaactcatctccaccctgatgccaattttccttggaaatcatcccaactctgccattatt
ttgcactatgcctggcatgggcagggacagtctccctcaattcgccagcttatcatgcac
gccatggcagaatggtatatgcgaggggagcagtatgaccaggccaaattgtcacggatt
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgtcgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcgtgtatgactttctta
aagagacggtgcccttccatcttgggtggccttgccccagagaaagatcagccgaaaagt
gctcaacttcctccggaaacactggcaacgatgttggcttgtctccaagcttgtgcaggg
agtgtttctcaagagttgtcagagactatcctgaccatggttgccaattgcagtaatgtt
atgaataaggctcgacagccaccaccaggagttatgccaaaaggacgcccccctagtgca
agcagcttagatgccatttctcctgtacagattgacccccttgctgggatggcatctctt
agtataggaggttcagctgccccccacacccagagtatgcagggttttcctccaaatttg
ggttctgctttcagtacccctcagtcaccagcaaaagcctttccacccctttccactcca
aatcagactacagctttcagtggcattggaggtctctcttcacagcttccagtaggtggt
cttggcacaggcagcctgactggcataggaactgcggctctgggactccctgcagtgaat
agtgatccatttgtgcagaggaagctgggcacctccggactgaaccaacctacattccag
cagagtaagatgaaacctccggacgtgtcccaggtgtggccagaggcgaaccagcacttt
agtaaagagattgatgatgaagcaaacagctattttcagcgcatctataaccatccgcca
catccaaccatgtctgttgatgaggtattagaaatgttacagaggtttaaggactccaat
attaaaagggaacgagaagtgtttaattgtatgctgaggaacttgtttgaagaatatcgg
ttttttccccagtaccctgataaagagctgcacataacagcctgcctgtttggcgggatc
atagaaaaaggactggttacttacatggcacttggcctggccctgcgctatgttcttgaa
gccttacgcaagccttatgaatccaaaatgtatttttttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtactgtcagcacttggcctccattagtcac
tttatgcggtttcctcatcatctgcaggagtacattgaatatggacagcaatctagagac
cctcctgtgaaaatgcagggttcaattaccacccctggaagtattgcacttgcccaggcc
caggcccaggcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcact
attgtaaccacctcaactactactactgtggctaaaaccataacaatcaccaggcccaca
ggagttagctttaagaaggatgtgccaccatctattaatactacaaatattgataccctg
ctggtggctacggaccaaactgagagaattgtggagcctccagaaaatgttcaggaaaaa
attgctttcatctttaacaacctttctcagtcaaatatgacacagaaggttgaagagctg
aaggaaacagtgaaagaagagtttatgccttgggtttcacaatatctcgtcatgaagaga
gtcagtattgagccaaactttcacagcctttattcaaattttcttgatactcttaagaat
cctgaatttaataagatggttctgaatgagacctacagaaatatcaaagtgcttctgaca
tcagataaagcagctgccaacttctcagaccgctccttgctgaagaacctgggccactgg
ctggggatgatcacactagccaaaaacaaacccatcttacacacagacttagatgtaaaa
tctttgctgttggaagcttacgttaaaggacagcaggaattgctgtatgtggtgcccttt
gttgccaaagtcttagaatccagtgttcggagtgtggttttcaggccaccaaatccttgg
acaatggcaattatgaatgtactagctgagcttcaccaagaacatgatttaaagttaaac
ttgaagtttgagattgaggttctctgcaagaatcttgccctggacatcaatgagctaaaa
cctgggagcctcctgaaagacaaggacagactgaaaaacttagaagagcagctctctgcc
cctaaaaaggacgtcaagcagccagaggcacttcctcccatcacaaccaccactacttct
accacacccgctaccagtaccacttgtacagctactgttcctccacagcctcagtacagc
taccatgacatcaatgtctattcactgggaggtctggcaccacacattactctaaatcct
acgattccattgtttcaggctcacccacagttgaagcagtgcgtacgtcaagcaattgaa
cgtgctgtccaagagcttgtccatccagtagtggatcgatcaattaagattgccatgact
acttgtgaacagattgtcaggaaagactttgcactggattctgaggagtcacgcatgcgg
atagcggctcatcacatgatgaggaacctgactgctggcatggctatgataacttgcagg
gaacctttactcatgagcatagctaccaacttgaaaaacagctttgccacagcactacga
gctgcatccccgcagcagagggaaatgatggagcaggcagcagcacagctagctcaggac
aattgtgaattggcgtgctgctttattcagaaaactgcagtagaaaaagcaggtccagaa
atggataagaggctagcaactgaatttgagcttcgaaaacatgcaaggcaagaggggcgc
aggtactgtgatcctgttgttttgacgtaccaggctgagcggatgccggagcagatcaga
ctgaaggttggtggtgtagacccaaaacagctggctgtttatgaagagtttgcacgtaat
gttcctggcttcttgcctaccaatgatttaactcagcctacaggatttttagctcagcct
atgaagcaagcttgggctactgatgatgtagcacagatctatgaaaagtgtatcacggaa
ctggagcagcacctgcatgccatccctccagccttagccatgaacccccagtctcagact
ctccggagccttctggatgctgttgtaatgtcacgaaactctcgggatgctattgctgcc
ctgggcttactgcagaaggctgtagagggcttgctagatgccacaagtggtgcagatgct
gacctgctgctacgttaccgggaatgtcacctccttgtactgaaagcattacaggatggc
cgtgcctatgggtctccttggtgtaacaaacagatcacaaggtgcctgattgagtgtcgc
gatgagtataagtataatgtggaagcagtagagctgttgattcgcaaccacctagttaat
atgcagcaatatgatcttcacctggctcagtcaatggagaatggtttgaactacatggct
gtggcatttgctatgcagttggtgaagatactgttggtggatgaaaggagtgtggcccat
gtgactgaagcagatctgtttcataccattgagacgctgatgaggatcaacgctcactcc
cgaggaaatgccccagaagggttgccccagctgatggaagtggtgcggtcaaactacgag
gctatgatcgaccgtgcacatgggggccccaacttcatgatgcattcgggcatctcccag
gcctctgagtatgatgaccccccgggcctccgggagaaggcagaatacctgctgcgggag
tgggtgaacctctaccactctgcagcggctggccgagatagcaccaaagccttctctgcg
tttgttggacaggtagagcttttggagagaaagatgcaccaacaaggaatcctgaagact
gatgacctcataacaaggtttttccgtctgtgcactgaaatgtgtgttgaaatcagctat
cgagctcaggctgagcagcagcacaatcctgctgccaaccctacgatgatccgggccaag
tgttaccataacctggatgcgtttgtacggctcattgcactgctggtcaagcactcaggg
gaggccactaacacagtcaccaagatcaatctgttaaacaaggttcttggtatagtagtg
ggtgtccttctacaggatcacgatgttcgacaaaatgagtttcagcaacttccctaccac
cgaattttcatcatgttgctcttagaactaaatgctcctgaacatgtgttggaaaccatt
aatttccagacactgacagctttctgcaatacattccacatcttgaggcctactaaagcc
ccaggctttgtgtatgcctggcttgaactgatctcacatcggatatttattgcaagaatg
ctggcgcacacaccacagcagaagggctggcctatgtatgcacagttattgattgattta
ttcaagtatttagctcctttccttagaaacgtggaactcagcaaacctatgcaaatcctc
tataagggtactttacgagtgctgctggtcctcctgcatgatttcccagaatttctttgt
gactaccactatggattctgtgatgtaattccacccaattgcatccagttaaggaatctg
atcctgagtgcctttccacgaaatatgaggctaccagacccattcactcccaacctgaag
gtggacatgttgagtgaaatcaacattgctcctcggatcctcactaatttcactggagtg
atgcctcctcagttcaaaaaggatttggattcctatcttaaaactcgatcgccagtcact
ttcctgtctgatctgcgcagtaacctacaggtatcaaatgaacctggcaaccgctacaac
atccagctgataaatgcactggtgctctacgtcggtactcaggccatcgcccacatccac
aacaaaggcagcacgccgtccatgagcaccatcactcactcggcgcacatggacatcttc
cagaacttggctgtggacctagacacggagggtcggtacctcttcttgaatgcaattgcc
aatcagctgcggtatcccaacagccacactcactacttcagctgcaccatgctgtacctt
tttgcagaggccaacactgaagctatacaggaacagatcaccagggttctcttggaacgg
ttgattgtaaataggccacatccttggggtcttctcattaccttcatagagctgattaaa
aatccggcatttaagttctggaaccacgagtttgttcactgtgccccagaaattgaaaag
ttgttccagtcagttgcacagtgctgtatgggacagaagcaggctcagcaagtgatggaa
gggactggtgccagttag
DBGET
integrated database retrieval system
