Trametes versicolor: TRAVEDRAFT_161236
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Entry
TRAVEDRAFT_161236 CDS
T04795
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_161236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_161236
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
TRAVEDRAFT_161236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_19
TPR_14
TPR_12
TPR_17
TPR_11
ANAPC3
TPR_7
TPR_9
TPR_22
TPR_6
T7SS_EccA1_N
TPR_10
ARM_TT21_5th
TPR_5
DUF7557
Alkyl_sulf_dimr
Motif
Other DBs
NCBI-GeneID:
19410420
NCBI-ProteinID:
XP_008034432
JGI:
161236
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MSAFVKSKLKAAKDAIGKQNYEKAQEAALGVLEYEPDNYHANVFLGLAYMKLGDLEKSEQ
AYRKAIDSNAVQILAWQGVSQLYEVSRKWGEYARTLEKLAHLYATANDATKCAEAVQKLL
ELRRDESKSNRIQLAEALSLLLPESPLYSALSSLPPPDPTNPISTNIGETQAAIHNSLPV
LEELISIYEQEENNTAQNEISKRRTRLGAPPLDQIHRDVTLEVLGSSQLPRLYDEILNHP
NTSDDLRRITEAKLLRTKQRHLYALPVTGKQQDPKARLAAEVEKLISGMVLLKIPDDLAW
SLFIEGKDVDSIEGYDFGTLRQYIELFPASPLEKLLRAYFEYMTIPLDDDDEDERGAAPE
PDTEVDHVEIIIEAFAELGESLLAHRIVAELYEQDSDYENAIKVSESGLELVRRAELNWG
RPFKQVTKAFNIVLATSLVHWFPPKNHIRALRIIDDILLEDPDCVPALMGRGFILQYAKR
WEEAAEFFSKVVKLQPEDFDQASRSREERAWCLAMCGRLQESADGLREVIDALENIEGHE
EDKARCWWKLGRCCWQMGDKNREEAYKHFVTSLKRSPTFAPAFTSLGIYYSEYVSPPDPN
RASKCFQKAFELDPREADAARRLAEGFAEEGEWDLVEVVARRTILGEGGLEDGPEARASR
RYLPINAWAWKAVGAVELTRRNYVAAIEVFQIALRADVDDHMSWLRLGEAYSKAGRFAAA
FKALEHARELDPEDWIASYFIGEVQRQMGQYEEAIEAFQSIRASRPQELGVLHSLGQSYL
DLGRFELATGFSARAETSFLCAVDVSLDLLDASSGFRRVAWKTIADALFHLSGFANISDD
DLAREVLSRVIPLVTDHPGKGLTDIVSYPLSVVDSSDLPLLALDTALTAYDYRLTLGAVD
DAAKATVYYDLGSALSTFARRATDSAKREHAQQHAIAQFKEALRHELSNDAFWVALGNAT
FLSQPGVCQHSYIRALEVDSKNAATWSNLGLFYLHHEDAELANEAFYKAQTLDPDYALAW
IGQGLVASVNGHDREARALFEHATTLTATVPEADLEFATRLFAKINQSTTSRSGTQEAFL
PAFFVLDRFCKQRPHDASALHLFGLVCERVGHIDLGIELIGRAITVLEAAYEESEDAAIE
RQFTVAHTNVARLRLSAGDFAGALESYQVATGLLPDEPSEYEADTTVLLAQCQFGAGLAH
FKLGELPEALALFEAAMATAADQPVVRGHVVVLLAQTLWAIGTDEAKETAKTQLLQSIEY
DPENLMAINTLAGMGILTDDDGLVDAALSEVLSLPLNQRHERDPERDVTYLLVQHHLGQG
DPKQALSVAQKAVFAEPERTDVRRSLAALTLRSGAHGAALAVLGSHPEGDFAELRASLAL
HAVALCVESWEDAPGALRLAQKGVMLSPWDRRGWETLAYVRSRATP
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgttcgtgaagagcaagttgaaagctgccaaggatgctataggcaagcaaaat
tacgagaaagcgcaggaagcggcgttaggtgtgttagagtatgaaccagacaactatcac
gcaaatgtgttccttggtcttgcatacatgaagttaggcgatctcgagaagagcgagcaa
gcatatcgcaaagcgattgattccaacgccgtccaaattctcgcatggcagggggtttcc
caactctacgaggtctcccgaaaatggggcgagtatgcgcgaactttggagaaattggcc
catctttatgcaactgcgaatgatgccactaagtgcgcggaagccgttcagaagctcctc
gagctccggcgcgatgaaagcaagagcaaccgcatacagctagcggaggccttatccctt
ctactgcctgaatcgcctctatattccgccctttcgtcccttcctccgccagacccaacg
aatcctatctctacgaacatcggagaaacgcaggccgcgatccacaactcgttacccgta
ttagaggagctcatctctatctacgagcaagaagagaacaacacggcgcagaacgagatc
tccaaacgcagaacacgtttgggtgctccgccactggatcagattcaccgcgatgtcact
ttggaggtcctgggctcctctcagctcccgcgcctctacgacgagatcctcaaccatccg
aacacctcggacgacctacggcgtatcaccgaagcgaaactgctccgaacgaagcaacgc
cacctttatgcccttcctgttacaggaaagcagcaggatcccaaagcgcgactcgctgct
gaagtagagaagctgatcagcggaatggttctgctcaagattccagatgacttggcgtgg
tcgttgttcatcgagggcaaagacgttgatagcatagagggttacgatttcgggacttta
agacagtacatcgagctgtttccggcatcgcctttggaaaagctacttcgagcatacttc
gagtacatgaccatccccctagatgacgacgatgaagacgaaagaggagctgctccggaa
cctgacacggaggtagaccatgtcgaaattatcattgaagccttcgccgagcttggcgaa
tcgttgctcgctcatcgtattgtcgccgagctctacgagcaggactcagactacgaaaac
gcgatcaaggtatccgagagcgggctggagctcgtccgccgcgccgagttgaactggggc
agaccgttcaaacaagtcacgaaggccttcaacatcgtattggcgacgtcgctggtgcat
tggttcccgccaaagaaccacattcgcgctctgagaatcatcgacgacatcctcttggag
gatcccgactgtgttcccgcgctcatgggcaggggcttcatccttcagtatgcaaagagg
tgggaggaggcagcagagtttttcagcaaggtggtcaagctgcaacctgaggacttcgac
caggcgagccgttccagggaggagcgggcgtggtgtctcgctatgtgtggtcgactacaa
gaatctgccgatgggctgagagaagtcatcgacgctcttgagaacatcgaaggccatgaa
gaagataaggctcgatgttggtggaagctcgggcgatgctgctggcagatgggtgacaag
aaccgagaagaggcatacaaacacttcgtcacatcgctcaagcggtctccgacgttcgcg
cctgccttcacatcgctgggtatctactattcggaatacgtctcgccgccggatcccaac
agagcctcgaagtgcttccagaaagcgttcgaacttgacccacgtgaggcggatgctgcg
cgcagactagcggagggcttcgcggaagaaggggaatgggaccttgtggaggtggtggcg
cgccgcaccatcctgggtgaaggaggcctggaggacggcccagaggcgagagcttcccgt
cgatacctcccgatcaatgcctgggcatggaaggctgttggtgcagtggagctgacgcga
cggaactacgttgctgcgatcgaagtattccaaatcgcacttcgggcggatgtcgacgac
cacatgtcttggctacggttgggcgaagcctacagcaaggccgggcggttcgcggcagca
ttcaaggcactcgaacacgcacgcgagctggaccctgaagactggattgcatcatacttc
attggcgaggtgcagcggcaaatggggcagtacgaagaagctatcgaagctttccagtcg
atccgcgctagccgtccacaagaactgggagtgcttcattctctcgggcagagctacctt
gacctaggccgcttcgagctcgcaacgggcttctcagcgagagcggagacgtccttcctc
tgcgcagtcgacgtcagccttgatctcttggacgcaagctcgggcttccggcgcgtggca
tggaagacgatcgccgacgcgctgttccatctgtctggcttcgcaaacatctccgacgac
gatctcgcacgagaggtgctctcgcgggttatcccgctagtgacggatcatcctggaaag
ggcctcactgacatcgtttcctaccctttgtccgtggtggactcgagtgacctcccgctt
cttgcgctcgacacagctctgacagcatacgattatcgcttgaccctcggcgccgtggat
gacgcggccaaagcaactgtgtactacgacctcggctccgcactgtcgacgtttgctagg
cgggctaccgatagcgcgaaacgtgagcacgcccagcaacacgccatcgcacagttcaag
gaggcgctgcgacacgagcttagtaatgatgcattctgggtggcactcgggaacgcaacc
ttcctgtctcagcctggtgtatgccagcattcttacatccgcgccctggaggtcgactct
aagaacgccgcgacgtggtcaaatctgggactgttctatctccaccacgaggacgcggag
cttgccaacgaggcattctacaaggcgcagactctagatccggactacgcgctggcgtgg
atcggacagggcctcgtcgcgtcagtgaacggacacgatagagaggcgcgcgcactgttc
gagcatgccactacgctgaccgcaacagtgcccgaggcggatctggagttcgcaacgcgt
ctcttcgcaaaaatcaaccagtcgacaacgtcgcgctccgggacccaggaggctttccta
cccgccttcttcgtgctcgaccgcttctgcaagcagcgcccgcacgacgcctccgcgctg
cacctcttcggcctcgtctgcgagcgcgtcgggcacattgacctcggcattgagctcatt
ggccgcgccatcaccgtgctcgaggccgcgtacgaggagtcggaggacgcagcgatcgaa
cgccagttcaccgtcgcgcacacgaacgttgcgcgcctgcggctgtctgcgggcgacttc
gccggcgcgctcgagtcgtaccaggtcgcgacggggttgttgcccgacgagcctagcgaa
tacgaggcggacacgacggtgctgctggctcagtgccagtttggcgcagggctcgcgcac
ttcaagcttggggaactgccggaggcgctcgcgctcttcgaggcggctatggcgacggct
gcggaccagcccgtcgtgcgcggtcacgttgtggtgctgctcgctcagacgctatgggca
atcgggacagacgaggcgaaggagactgctaaaacgcagctcctgcagagcatcgagtac
gaccccgagaacctcatggcgatcaacacgctcgccgggatgggcatcctcacggacgac
gacggtctcgtcgacgccgcgctctctgaagtcctctcgctgccgctcaaccagcggcat
gagcgcgaccccgagcgcgacgtcacgtacctcctcgtgcagcaccaccttggccaggga
gaccccaagcaagcactgtccgtcgcccagaaggccgtgttcgcagagcccgagcgcacc
gacgtccgccgctcgctcgccgcgctcacgctccggagcggcgcacacggggcggcgctc
gcggtcctcgggtcgcaccccgagggcgacttcgcggagctgcgcgcgtcacttgcactg
catgcggtcgcgctgtgcgtcgagagctgggaggacgccccgggcgcgctcaggctcgcg
cagaagggcgtcatgctctcgccgtgggatcggcgtgggtgggagacactcgcgtacgtc
cggagtcgtgccacgccgtga
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